Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN09335

               1      -     51
UN09335        --> ATGAAGATTGAAGTGCTTCTTACAAGGCTATTACTTCTTAATCTCGTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..GAAGATTGAAGTGCTTCTTACAAGGCTATTACTTCTTAATCTCGTCCA
EV547617       <-- ..................................................
FD549327       <-- ..................................................
EX893130       --> ATGAAGATTGAAGTGCTTCTTACAAGGCTATTAGTTCTTAATCTCATCCA
FD982762       --> ...AAGATTGAAGTGCTTCTTACAAGGCTATTACTTCTTAATCTCGTCCA
EV543454       --> .......................................AATCTCGTCCA
EW719756       --> ............................................gGTCGA
EY942738       --> ................................................CA
EY910671       --> ..................................................
FD545392       --> ..................................................
EY935894       --> ..................................................

               51     -    101
UN09335        --> AATCAATGTAAGCTGCTTAAATGTAGATAGACTGAGTGGGATGTGTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- AATCAATGTAAGCTGCTTAAATGTAGATAGACTGAGTGGGATGTGTTCCA
EV547617       <-- ..................................................
FD549327       <-- ..................................................
EX893130       --> AATCAATGTAAGCTGCTTAAATGTAGATAGACTGAGTGGGATGTGTTCCA
FD982762       --> AATCAATGTAAGCTGCTTAAATGTAGATAGACTGAGTGGGATGTGTTCCA
EV543454       --> AATCAATGTAAGCTGCTTAAAAGTAGATAGACTGAGTGGGATGTGTTCCA
EW719756       --> AATCAATGTAAACTGCTTAAAAGTAGATAGACTGAGTGGGATGTGTTCCA
EY942738       --> AATCAATGTAAGCTGCTTAAATGTAGATAGACTGAGTGGGATGTGTTCCA
EY910671       --> ...............................................CCA
FD545392       --> ..................................................
EY935894       --> ..................................................

               101    -    151
UN09335        --> AATAACCATGATTAAACCTAAACACAGAAGAAGCAAAAACAATCCTCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- AATAACCATGATTAAACCTAAACACAGAAGAAGCAAAAACAATCCTCAGC  Raphanus raphanistrum subsp. maritimus
EV547617       <-- ......................................ACAATTCTCAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549327       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893130       --> AATAACCATGATTAAACCTAAACACAGAAGAAGCAAAAACAATCCTCAGC  Raphanus sativus var. oleiformis
FD982762       --> AATAACCATGATTAAACCTAAACACAGAAGAAGCCAAAACAATCCTCAGC  Raphanus raphanistrum subsp. landra
EV543454       --> AATAACCATGATTAAACCTAAACACAGAAAAAGTAAAAACAATTCTCAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719756       --> AATAACCATGATTAAACCTAAACACATAGAAAGCAAAAACAATCCTCAGC  Raphanus sativus var. oleiformis
EY942738       --> AATAACCATGATTAAACCTAAACACAGAAGAAGCAAAAACAACCCTCAGC  Raphanus sativus cv Rat-Tail Radish #3870
EY910671       --> AATAACCATGATTAAACCTAAACACAGAAAAAGTAAAAACAATTCTCAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD545392       --> ........................................AATTCTCAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY935894       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               151    -    201
UN09335        --> TACAACAACAACAAGTACAAACGTTTTGGTCATTTCAGGATCAGAAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- TACAACAACAACAAGTACAAACGTTTTCTTCATTTCAGGATCAGAAACAT
EV547617       <-- TACAACAACAACAAGTACAAACGTTTTGGTCATTTCAGGATCAGAAACAT
FD549327       <-- ..................................................
EX893130       --> TACAACAACAACAAGTACAAACGTTTTGTTCATTTCAGGATCAGAAACAT
FD982762       --> TACAACAACAACAAGTACAAACGTTTTCTTCATTTCAGGATCAGAAACAT
EV543454       --> TACAACAACAACAAGTACAAACGTTTTGGTCATTTCAGGATCAGAAACAT
EW719756       --> TACAACAACAACAAGTACAAACGTTTTGGTCATTTCAGGATCAGAAACAT
EY942738       --> TACAACAACAACAAGTACAAACGTTTTGTTCATTTCAGGATCAGAAACAT
EY910671       --> TACAACAACAACAAGTACGAACGTTTTGGTCATTTCAGGATCAGAAACAT
FD545392       --> TACAACAACAACAAGTACAAACGTTTTGGTCATTTCAGGATCAGAAACAT
EY935894       --> ..................................................

               201    -    251
UN09335        --> TTCCGGTGAACCACAGATGGTCCAGTCTCGTCGTAGTCAGCTTTAGTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- TTCCGGTGAACCACAGATGGTCCAGTCTCGTCGTAGTCAGCTTTAGTAAC
EV547617       <-- TTCCGGTGAACCACAGATGGTCCAGTCTCGTCGTAGTCAGCTTTAGTAAC
FD549327       <-- ..................................................
EX893130       --> TTCCGGTGAACCACAGATGGTCCAGTCTCGTCGTAGTCAGCTTTAGTAAC
FD982762       --> TTCCGGTGAACCACAGATGGTCCAGTCTCGTCGTAGTCAGCTTTAGTAAC
EV543454       --> TTCCGGTGAACCACAGATGGTCCAGTCTCGTCGTAGTCAGCTTTAGTAAC
EW719756       --> TTCCGGTGAACCACAGATGGTCCAGTCTCGTCGTAATCAGCTTTAGTAAC
EY942738       --> TTCCGGTGAACCACAGATGGTCCAGTCTCGTCGTAGTCAGCTTTAGTAAC
EY910671       --> TTCCGGTGAACCACAGATGGTCCAGTCTCGTCGTAGTCAGCTTTAGTAAC
FD545392       --> TTCCGGTGAACCACAGATGGTCCAGTCTCGTCGTAGTCAGCTTTAGTAAC
EY935894       --> ......................CAGTCTCGTCGTAGTCAGCTTTAGTAAC

               251    -    301
UN09335        --> ATGCTGATTCTGCGGAAACACCACCTTGGCTAGTATTGCTCCTCCTACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ATGCTGATTCTGCGGAAACACCACCTTGGCTAGTATTGCTCCTCCTACCC
EV547617       <-- ATGCTGATTCTGCGGAAACACCACCTTGGCTAGTATTGCTCCTCCTACCC
FD549327       <-- ..................................................
EX893130       --> ATGCTGATTCTGCGGAAACACCACCTTGGCTAGTATTGCTCCTCCTACCC
FD982762       --> ATGCTGATTCTGCGGAAACACCACCTTGGCTAGTATTGCTCCTCCTACCC
EV543454       --> ATGCTGATTCTGCGGAAACACCACCTTGGCTAGTATTGCTCCTCCTACCC
EW719756       --> ATGCTGATTCTGCGGAAACACCACCTTGGCTAGTATTGCTCCTCCTACCC
EY942738       --> ATGCTGATTCTGCGGAAACACCACCTTGGCTAGTATTGCTCCTCCTACCC
EY910671       --> ATGCTGATTCTGCGGAAACACCACCTTGGCTAGTATTGCTCCTCCTACCC
FD545392       --> ATGCTGATTCTGCGGAAACGCCACCTTGGCTAGTATTGCTCCTCCTACCC
EY935894       --> ATGCTGATTCTGCGGAAACACCACCTTGGCTAGTATTGCTCCTCCTACCC

               301    -    351
UN09335        --> AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGCGGTTTCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGAGGCTTCACC  Raphanus raphanistrum subsp. maritimus
EV547617       <-- AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGCGGTTTCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549327       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893130       --> AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGCGGCTTAACC  Raphanus sativus var. oleiformis
FD982762       --> AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGCGGCTTCACC  Raphanus raphanistrum subsp. landra
EV543454       --> AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGCGGTTTCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719756       --> AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGCGGCTTCACC  Raphanus sativus var. oleiformis
EY942738       --> AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGCGGCTTCACC  Raphanus sativus cv Rat-Tail Radish #3870
EY910671       --> AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGCGGTTTCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD545392       --> AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGCGGTTTCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY935894       --> AAGCCGAATACAATCCCAAATTCTCATGCATATATTCCGGCGGTTTCACC  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN09335        --> AGCGTTGGCCTTATAGCAGATGAGCACAAGCTTGCTTCTTTCTGAAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- AGCGTTGGCCTAATAGCAGATGAGCACAAGCTTGCTTCTTTTTGAAACCT  Raphanus raphanistrum subsp. maritimus
EV547617       <-- AGCGTTGGCCTTATAGCAGATGAGCACAAGCTTGCTTCTTTCTGAAACCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549327       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893130       --> AGCGTTGGCCTAATAGCAGATGAGCACAAGCTTGCTTCTTTCTGAAACCT  Raphanus sativus var. oleiformis
FD982762       --> AGCGTTGGCCTAATAGCAGATGAGCACAAGCTTGCTTCTTTCTGAAACCT  Raphanus raphanistrum subsp. landra
EV543454       --> AGCGTTGGCCTTATAGCAGATGAGCACAAGCTTGCTTCTTTCTGAAACCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719756       --> AGCGTTGGCCTAATAGCAGATGAACACAAGCTTGCTTCTTTCTGAAACCT  Raphanus sativus var. oleiformis
EY942738       --> AGCGTTGGCCCAATAGCAAATGAGCACAAGCTTGCTTCTTTCTGAAACCT  Raphanus sativus cv Rat-Tail Radish #3870
EY910671       --> AGCGTTGGCCTTATAGCAGATGAGCACAAGCTTGCTTCTTTCTGAAACCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD545392       --> AGCGTTGGCCTTATAGCAAATGAGCACAAGCTTGCTTCTTTCTGAAACCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY935894       --> AGCGTTGGCCTTATAGCAGATGAGCACAAGCTTGCTTCTTTCTGAAACCT  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN09335        --> GCCTTCGAATCCTGTCATGGAGGTTGTACCACCACAAAGCACAGTGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- GCCTTCGAATCCTGTCATGGAGGTTGTACCACCACAAAGCACAGTGTTCT
EV547617       <-- GCCTTCGAATCCTGTCATGGAGGTTGTACCACCACAAAGCACAGTGTTCT
FD549327       <-- ..................................................
EX893130       --> GCCTTCGAATCCTGTCATGGGGGTTGTACCACCACAAAGCACAGTGTTCT
FD982762       --> GCCTTCGAATCCTGTCATGGAGGTTGTACCACCACAAAGCACAGTGTTCT
EV543454       --> GCCTTCGAATCCTGTCATGGAGGTTGTACCACCACAAAGCACAGTGTTCT
EW719756       --> GCCTTCGAATCCTGTCATGGAGGTTGTACCACCACAAAGCACAGTGTTCT
EY942738       --> GCCTTCGAATCCTGTCATGGAGGTTGTACCACCACAAAGCACAGTGTTCT
EY910671       --> GCCTTCGAATCCTGTCATGGAGGTTGTACCACCACAAAGCACAGTGTTCT
FD545392       --> GCCTTCGAATCCTGTCATGGAGGTTGTACCACCACAAAGCACAGTGTTCT
EY935894       --> GCCTTCGAATCCTGTCATGGAGGTTGTACCACCACAAAGCACAGTGTTCT

               451    -    501
UN09335        --> CCAAGAGTTGCCTATGGTTCTCAGATGATACTGTGGAGATAATCCGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- CCAAGAGTTGCCTATGGTTCTCAGATGATACTGTGGAGATAATCCGGACA
EV547617       <-- CCAAGAGTTGCCTATGGTTCTCAGATGATACTGTGGAGATAATCCGGACA
FD549327       <-- ..................................................
EX893130       --> CCAAGAGTTGCCTATGGTTCTCAGATGATACTGTGGAGATAATCCGGACA
FD982762       --> CCAAGAGTTGCCTATGGTTCTCAGATGATACTGTGGAGATAATCCGGACA
EV543454       --> CCAAGAGTTGCCTATGGTTCTCAGATGATACTGTGGAGATAATCCGGACA
EW719756       --> CCAAGAGTTGCCTATGGTTCTCAGATGATACTGTGGAGATAATCCGGACA
EY942738       --> CCAAGAGTTGCCTATGGTTCTCAAATGATACTGTGGAGATAATCCGGACA
EY910671       --> CCAAGAGTTGCCTATGGTTCTCAGATGATACTGTGGAGATAATCCGGACA
FD545392       --> CCAAGAGTTGCCTATGGTTCTCAAATGATACTGTGGAGATAATCCGGACA
EY935894       --> CCAAGAGTTGCCTATGGTTCTCTGATGATACTGTGGAGATAATCCGGACA

               501    -    551
UN09335        --> AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCAGTATTGATGGCTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCcc...............  Raphanus raphanistrum subsp. maritimus
EV547617       <-- AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCAGTATCGATGGTTGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549327       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893130       --> AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCAGTATTGATGGCTGAAA  Raphanus sativus var. oleiformis
FD982762       --> AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCAGTATTGATGGCTGAAA  Raphanus raphanistrum subsp. landra
EV543454       --> AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCAGTATCGATGGTTGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719756       --> AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCAGTATTGATGGCTGAAA  Raphanus sativus var. oleiformis
EY942738       --> AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCAGTATTGATGGCTGAAA  Raphanus sativus cv Rat-Tail Radish #3870
EY910671       --> AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCAGTATCGATGGCTGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD545392       --> AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCAGTATCGATGGCTGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY935894       --> AGCTGTTCAACGATTCCATGCTCCTGGAGTCCCAGTATTGATGGCTGAAA  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN09335        --> CAAAGCTTCACCAACAGAGTATCTCTCTCGCCCAATGCTTATCACCTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- CAAAGCTTCACCAACAGAGTATCTCTCTCGCCCAATGCTTATCACCTGTC
FD549327       <-- ..................................................
EX893130       --> CAAAGCTTCACCAACAGAGTATCTCTCTCGCCCAATGCTTATCACCTGTC
FD982762       --> CAAAGCTTCACCAACAGAGTATCTCTCTCGCCCAATACTTATTACCTGTC
EV543454       --> CAAAGCTTCACCAACAGAGTATCTCTCTCGCCCAATGCTTATCACCTGTC
EW719756       --> CAAAGCTTCACCAACAGAGTATCTCTCTCGCCCAATGCTTATCACCTGTC
EY942738       --> CAAAGCTTCACCAACAGAGTATCTCTCTCGCCCAATGCTTATCACCTGTC
EY910671       --> CAAAGCTTCACCAACAGAGTATCTCTCTCGCCCAATGCTTATCACCTGTC
FD545392       --> CAAAGCTTCGCCAACAGAGTATCTCTCTCGCCCAATGCTTATCACCTGTC
EY935894       --> CAAAGCTTCACCAACAGAGTATCTCTCTCGCCCAATGCTTATCACCTGTC

               601    -    651
UN09335        --> CATCAGGAAGTGTATGCTGCTCGACCTCACAGTTTTGGGTTTTCTCGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV547617       <-- CATCAGGAAGTGTATGCTGCTCGACCTCACAGTTTTGGGTTTTCTCGTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549327       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893130       --> CATCAGGAAGTGTATGCTGCTCAACTTCACAGTTTTGAGTTTTCTCGTAA  Raphanus sativus var. oleiformis
FD982762       --> CA................................................  Raphanus raphanistrum subsp. landra
EV543454       --> CATCAGGAAGTGTATGCTGCTCGACCTCACAGTTTTGGGTTTTCTCGTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719756       --> CATCCGGAAGTGTATGCTGCTCAACTTCACAGTTTTGAGTTTTCTCGTAA  Raphanus sativus var. oleiformis
EY942738       --> CATCAGGAAGTGTATGCTGCTCAACTTCACAGTTTTGAGTTTTCTCGTAA  Raphanus sativus cv Rat-Tail Radish #3870
EY910671       --> CATCAGGAAGTGTATGCTGCTCGACCTCACAGTTTTGGGTTTTCTCGTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD545392       --> CATCAGGAAGCGTATGCTGCTCGACCTCACAGTTTTGGGTTTTCTCGTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY935894       --> CATC..............................................  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN09335        --> GCAAGTTCGTCCTCAGCACAGTTTGCATACTGTTCCTTGAGCGTTTCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV547617       <-- GCAAGTTCGTCCTCAGCACAGTTTGCATACTGTTCCTTGAGCGTTTCAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549327       <-- ...............GCACAGTTTGCATACTGTTC-TTGAGCGTTTCAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893130       --> GCAAGTTAGTCCTCAGCACAGTTTGCATACTGTTCCTTCAGCGTTTCAAC  Raphanus sativus var. oleiformis
FD982762       --> ..................................................  Raphanus raphanistrum subsp. landra
EV543454       --> GCAAGTTCGTCCTCAGCACAGTTTGCATACTGTTCCTTGAGCGTTTCAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719756       --> GCAAGTTCGTCCTCAGCACAGTTTGCATACTGTTCCTTCAGCGTTTCAAC  Raphanus sativus var. oleiformis
EY942738       --> GCAAGTTCGTCCTCAGCACAGTTTGCATACTGTTCCTTCAGCGTTTCAAC  Raphanus sativus cv Rat-Tail Radish #3870
EY910671       --> GCAAGTTCGTCCTCAGCACAGTTTGCATACTGTTCCTTGAGCGTTTCGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD545392       --> GCAAGTTCGTCCTCAGCACAGTTTGCATACTGTTCCTTGAGCGTTTCAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY935894       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               701    -    751
UN09335        --> ATCAGACATGCTGAGATTCATGGACGGGTTGGATTTTCCAAGCTCTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ATCAGACATGCTGAGATTCATGGACGGGTTGGATTTTCCAAGCTCTTGGG
FD549327       <-- ATCAGACATGCTGAGATTCATGGACGGGTTGGATTTTCCAAGCTCTTGGG
EX893130       --> ATCAGACATGCTGAGATTCATGG...........................
FD982762       --> ..................................................
EV543454       --> ATCAGACATGCTGAGATTCATGGACGGGTTGGATTTTCCAAGCTCTTGGG
EW719756       --> ATCAGACATGCTGAGATTCATGGAa.........................
EY942738       --> ATCAGACATGCTGAGATTCATGGAAGGGTTGGATTTTCCAAGCCCTTGTG
EY910671       --> ATCAGACATGCTGAGATTCATGGACGGGTTGGATTTTCCAAGCTCTTGGG
FD545392       --> ATCAGACATGCTGAGATTCATGGACGGGTTGGATTTTCCAAGCTCTTGGG
EY935894       --> ..................................................

               751    -    801
UN09335        --> CGAATAGTTTTGTAAGATCGGTTCCACCGAGCTCAAACCGTTTTGAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- CGAATAGTTTTGTAAGATCGGTTCCACCGAGCTCAAACCGTTTTGAGGCA
FD549327       <-- CGAATAGTTTTGTAAGATCGGTTCCACCGAGCTCAAACCGTTTTGAGGCA
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> CGAATAGTTTTGTAAGATCGGTTCCACCGAGCTCAAACCGTTTTGAGGCA
EW719756       --> ..................................................
EY942738       --> CGAATAGTTTTGTAAGATCGGTTCCACCGAGCTCAAACCGTTTTGAGGCA
EY910671       --> CGAATAGTTTTGTAAGATCGGTTCCACCGAGCTCAAACCGTTTTGAGGCA
FD545392       --> CGAATAGTTTTGTAAGATCGGTTCCACCGAGCT.................
EY935894       --> ..................................................

               801    -    851
UN09335        --> ATGTGCTGCACAGCACCTTCAAGAACTGGGGCAATATCTATCTTCCCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ATGTGCTGCACAGCACCTTCAAGAACTGGGGCAATATCTATCTTCCCATG
FD549327       <-- ATGTGCTGCACAGCACCTTCAAGAACTGGGGCAATATCTATCTTCCCATG
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> ATGTGCTGCACAGCACCTTCAAGAACTGGGGCAATATCTATCTTCCCATG
EW719756       --> ..................................................
EY942738       --> ATGTGCTGCACGGCACCTT...............................
EY910671       --> ATGTGCTGCACAGCACCTTCAAGAACTGGGGCAATATCTATCTTCCCATG
FD545392       --> ..................................................
EY935894       --> ..................................................

               851    -    901
UN09335        --> ACCAATATCAACAGTGCAACCAGAGATCCTTCCAACAGCATAAAGAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ACCAATATCAACAGTGCAACCAGAGATCCTTCCAACAG............
FD549327       <-- ACCAATATCAACAGTGCAACCAGAGATCCTTCCAACAGCATAAAGAGACA
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> ..................................................
EW719756       --> ..................................................
EY942738       --> ..................................................
EY910671       --> ACCAATATCAACAGTGCATCCAGAGATCCTTCCAACAGCATAAAGAGACA
FD545392       --> ..................................................
EY935894       --> ..................................................

               901    -    951
UN09335        --> ACACTGCTTGCTCTGACGCATAGAATCCAGACACATTGAACGTTTCAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ..................................................
FD549327       <-- ACACTGCTTGCTCTGACGCATAGAATCCAGACACATTGAACGTTTCAAAC
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> ..................................................
EW719756       --> ..................................................
EY942738       --> ..................................................
EY910671       --> ACACTGCTTGCTCTGACGCATAGA-TCCAGACACATTGAACGTTTCAA-C
FD545392       --> ..................................................
EY935894       --> ..................................................

               951    -   1001
UN09335        --> ATCAACTGCACCAACTGCTCCCTAATAGCCTTAGGAGTACAAAGTGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ..................................................
FD549327       <-- ATCAACTGCACCAACTGCTCCCTAATAGCCTTAGGAGTACAAAGTGGATC
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> ..................................................
EW719756       --> ..................................................
EY942738       --> ..................................................
EY910671       --> ATCAACTGCACCAACTGCTCCC............................
FD545392       --> ..................................................
EY935894       --> ..................................................

               1001   -   1051
UN09335        --> AGTGAAGAGTATATTGCCTTCGTTTCCTTCTTCCCATCCAAGCCCAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ..................................................
FD549327       <-- AGTGAAGAGTATATTGCCTTCGTTTCCTTCTTCCCATCCAAGCCCAGTGT
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> ..................................................
EW719756       --> ..................................................
EY942738       --> ..................................................
EY910671       --> ..................................................
FD545392       --> ..................................................
EY935894       --> ..................................................

               1051   -   1101
UN09335        --> ACACAACGTAACGCAACAGATCCTCCATAGCGTCCCAGTCTCTGATGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ..................................................
FD549327       <-- ACACAACGTAACGCAACAGATCCTCCATAGCGTCCCAGTCTCTGATGAAC
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> ..................................................
EW719756       --> ..................................................
EY942738       --> ..................................................
EY910671       --> ..................................................
FD545392       --> ..................................................
EY935894       --> ..................................................

               1101   -   1151
UN09335        --> CCCCTTTCAATCGGATCAAGAGTGACGTCTTCAAACACAGCGTTGGTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ..................................................
FD549327       <-- CCCCTTTCAATCGGATCAAGAGTGACGTCTTCAAACACAGCGTTGGTGGG
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> ..................................................
EW719756       --> ..................................................
EY942738       --> ..................................................
EY910671       --> ..................................................
FD545392       --> ..................................................
EY935894       --> ..................................................

               1151   -   1201
UN09335        --> GTTATTATCAGACCCATCATCAACCATTCGTTTCATCTGAGATGGGATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ..................................................
FD549327       <-- GTTATTATCAGACCCATCATCAACCATTCGTTTCATCTGAGATGGGATTA
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> ..................................................
EW719756       --> ..................................................
EY942738       --> ..................................................
EY910671       --> ..................................................
FD545392       --> ..................................................
EY935894       --> ..................................................

               1201   -   1251
UN09335        --> TCATTGCAGGAGACTGATCTGGAATCGCCGCTCCTGCTTTCAGGAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ..................................................
FD549327       <-- TCATTGCAGGAGACTGATCTGGAATCGCCGCTCCTGCTTTCAGGAGCTTC
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> ..................................................
EW719756       --> ..................................................
EY942738       --> ..................................................
EY910671       --> ..................................................
FD545392       --> ..................................................
EY935894       --> ..................................................

               1251   -   1301
UN09335        --> GAGCCCGCATCGACAACAAGGGCTTCCATTTTTTCTCTCTCGCACAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- ..................................................
EV547617       <-- ..................................................
FD549327       <-- GAGCCCGCATCGACAACAAGGGCTTCCATTTTTTCTCTCTCGCACAAATA
EX893130       --> ..................................................
FD982762       --> ..................................................
EV543454       --> ..................................................
EW719756       --> ..................................................
EY942738       --> ..................................................
EY910671       --> ..................................................
FD545392       --> ..................................................
EY935894       --> ..................................................

               1301   -   1351
UN09335        --> AACCCTTGTATTGAAAATGGGCGAAAAGTTTTACGAGTGAGTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV528415       <-- .............................................
EV547617       <-- .............................................
FD549327       <-- AACCCTTGTATTGAAAATGGGCGAAAAGTTTTACGAGTGAGTGAC
EX893130       --> .............................................
FD982762       --> .............................................
EV543454       --> .............................................
EW719756       --> .............................................
EY942738       --> .............................................
EY910671       --> .............................................
FD545392       --> .............................................
EY935894       --> .............................................