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Alignment for radish unigene UN09359

               -3     -     47
UN09359        --> ....GGTCTGAAATTCATCAATAACACATTTCTCAACAACAACCAACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- ..................................................
FD966575       <-- ..................................................
FD538875       <-- ..................................................
EY901117       --> ....GGTCTGAAATTCATCAATAACACATTTCTCAACAACAACCAGCAAT
FD542934       --> ....GGTCTGAAATTCATCAATAACACATTTCTCAACAAGAACCAACAAT
EV524974       --> ggatctTCTGAAATTCATCAATAACACATTTCTCAACAACAACCAACAAT
EX888852       --> ggatctTCTGAAATTCATCAATAACACATCTCTCAACAACAACCAACAAT
EW732484       --> .........GAAATTCATCAATAACACATTTCTCAACAACAACCAGCAAT
EY906817       --> ........gGAAATTCATCAATAACACATTTCTCGACAACAACCAACAAT
EY908384       --> .......ggGAAATTCATCAATAACACATTTCTCGACAACAACCAACAAT
EY949073       --> ......aggGAAATTCATCAATAACACATTTCTCAACAACAACCAGCAAT
FD956939       --> .......ggGAAATTCATCAATAACACATTTCTCAACAACAACCAGCAAT
FD970141       --> .......ggGAAATTCATCAATAACACATTTCTCAACAAGAACCAACAAT
EV527239       --> ..............ggATCAATAACACATTTCTCAACAACAACCAGCAAT
EX754831       --> .........................ACATTTCTCAACAAGAACCAACAAT

               47     -     97
UN09359        --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCTGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- ..................................................
FD966575       <-- ..................................................
FD538875       <-- ..................................................
EY901117       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCTGCCC
FD542934       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCTGCCC
EV524974       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCCGCCC
EX888852       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCTGCCC
EW732484       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCTGCCC
EY906817       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCTGCCC
EY908384       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCTGCCC
EY949073       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCTGCCC
FD956939       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCTGCCC
FD970141       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGCTGCCC
EV527239       --> GGCAACTTCCATGACCCAACTTTTTGTTATCCTCTTGCTTGTGGCTGCCC
EX754831       --> GGCAACTTCCATGACCCAACTTTTTGTTACCCTCTTGCTTGTGGTTGCCC

               97     -    147
UN09359        --> ACACGGCCTTCGCCGAAACAAACATGCTTCAAGATCTTTGTGTTGCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- ...............AAACAAAC-TGCTTCAAGATCTTTGTGTTGCTGAT
FD966575       <-- ................AACAAACATGCTTCAAGATCTTTGTGTTGCTGAT
FD538875       <-- ..................................................
EY901117       --> ACACGGCCTTCGCCGAAACAAACATGCTTCAAGATCTTTGTGTTGCTGAT
FD542934       --> ACACGGCCTTCGCCGAAACAAACATGCTTCAAGATCTTTGTGTTGCTGAT
EV524974       --> ACACGGCCTTCGCCGAAACAAACATGCTTCAAGATCTTTGTGTCGCTGAT
EX888852       --> ACACGGCCTTCGCGGAAACAAACATGCTTCAAGATCTTTGTGTTGCTGAT
EW732484       --> ACACGGCATTCGCCGAAACAAACATGCTTCAAGATCTTTGTGTTGCTGAT
EY906817       --> ACACGGCCTTCGCCGAAACAAACATGCTTCAAGATCTCTGTGTTGCTGAT
EY908384       --> ACACGGCCTTCGCCGAAACAAAGATGCTTCAAGATCTCTGTGTTGCTGAT
EY949073       --> ACACGGCATTCGCCGAAACAAACATGCTTCAAGATCTTTGTGTTGCTGAT
FD956939       --> ACACGGCATTCGCCGAAACAAACATGCTTCAAGATCTTTGTGTTGCTGAT
FD970141       --> ACACGGCCTTCGCCGAAACAAACATGCTTCAAGATCTTTGTGTTGCTGAT
EV527239       --> ACACGGCCTTCGCCGAAACAAACATGCTTCAAGATCTTTGTGTTGCTGAT
EX754831       --> ACACGGCCTTCGCCGAAACAAAC-TGCTTCAAGATCTTTGTGTTGCTGAT

               147    -    197
UN09359        --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
FD966575       <-- CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
FD538875       <-- ..................................................
EY901117       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
FD542934       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
EV524974       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
EX888852       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
EW732484       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAAT
EY906817       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
EY908384       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
EY949073       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAAT
FD956939       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAAT
FD970141       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
EV527239       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT
EX754831       --> CTCAAAGGTACCAAAGTAAACGGATACGCATGCAAAGACCCATCACAAGT

               197    -    247
UN09359        --> AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
FD966575       <-- AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
FD538875       <-- ..................................................
EY901117       --> AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
FD542934       --> AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
EV524974       --> AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
EX888852       --> AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
EW732484       --> AACACCAGATGATTTTTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
EY906817       --> AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
EY908384       --> AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
EY949073       --> AACACCAGATGATTTTTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
FD956939       --> AACACCAGATGATTTTTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
FD970141       --> AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
EV527239       --> AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT
EX754831       --> AACACCAGATGATTTCTACTACATAGGCTTAGCCGCCCCTGCAGACACAT

               247    -    297
UN09359        --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
FD966575       <-- CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
FD538875       <-- ..................................................
EY901117       --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
FD542934       --> CTAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
EV524974       --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
EX888852       --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
EW732484       --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
EY906817       --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
EY908384       --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
EY949073       --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
FD956939       --> CCAACACCGCAATGGGGTCAGCCATTACAGCAGGCAACGTTGAGAAAATC
FD970141       --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
EV527239       --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC
EX754831       --> CCAACACCGCAATGGGGTCAGCCGTTACAGCAGGCAACGTTGAGAAAATC

               297    -    347
UN09359        --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
FD966575       <-- CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
FD538875       <-- ..................................................
EY901117       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
FD542934       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
EV524974       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
EX888852       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
EW732484       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
EY906817       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
EY908384       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
EY949073       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
FD956939       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
FD970141       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
EV527239       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC
EX754831       --> CCTGGCCTCAACATGATGGGTACCTCCATGTCTCGTATCGACTACGCACC

               347    -    397
UN09359        --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
FD966575       <-- TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
FD538875       <-- ..................................................
EY901117       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
FD542934       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
EV524974       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
EX888852       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
EW732484       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
EY906817       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAATCCATAT
EY908384       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCT-CTGAAGCCATAT
EY949073       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
FD956939       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
FD970141       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
EV527239       --> TGGTGGACCCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT
EX754831       --> TGGTGGACTCAACCCGCCACATCTTCACCCCCGAGCTTCTGAAGCCATAT

               397    -    447
UN09359        --> TCGTCCTCGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- TCGTCCTCGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
FD966575       <-- TCGTCCTCGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
FD538875       <-- ....................TTCGTCGGCTTCTTGACCACCACTGGAAAA
EY901117       --> TCGTCCTGGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
FD542934       --> TCGTCCTCGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
EV524974       --> TCGTCCTCGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
EX888852       --> TCGTCCTCGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
EW732484       --> TCGTCCTGGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
EY906817       --> TCGTCCTCGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
EY908384       --> TCGTCCTCGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
EY949073       --> TCGTCCTGGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
FD956939       --> TCGTCCTGGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
FD970141       --> TCGTCCTCGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
EV527239       --> TCGTCCTGGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA
EX754831       --> TCGTCCTCGAAGGACGTCTCTTCGTCGGCTTCTTGACCACCACTGGAAAA

               447    -    497
UN09359        --> CTCATCTCCAAACACATCAACAAGGGAGACGTCTTTGTATTCCCAAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- CTCATCTCCAAACACATCAACAAAGGAGACGTCTTTGTATTCCCTAGAGC
FD966575       <-- CTCATCTCCAAACACATCAACAAAGGAGACGTCTTTGTATTCCCTAGAGC
FD538875       <-- CTCATCTCCAAACACATCAACAAAGGAGACGTCTTTGTATTCCCTAGAGC
EY901117       --> CTCATCTCCAAACACATCAACAAGGGTGACGTCTTTGTATTCCCAAGAGC
FD542934       --> CTCATCTCCAAACACATCAACAAAGGAGACGTCTTTGTATTCCCTAGAGC
EV524974       --> CTCATCTCCAAACACATCAACAAGGGAGACGTCTTTGTATTCCCAAGAGC
EX888852       --> CTCATCTCCAAACACATCAACAAAGGAGACGTCTTTGTATTCCCAAGAGC
EW732484       --> CTCATCTCCAAACACATCAACAAGGGTGACGTCTTTGTATTCCCAAGAGC
EY906817       --> CTCATCTCCAAACACAT.................................
EY908384       --> CTCATCTCCAAACACATCAACAAGGGTGACGTCTTTGTATTCCCAAGAGC
EY949073       --> CTCATCTCCAAACACATCAACAAGGGTGACGTCTTTGTATTCCCAAGAGC
FD956939       --> CTCATCTCCAAACACATCAACAAGGGTGACGTCTTTGTATTCCCAAGAGC
FD970141       --> CTCATCTCCAAACACATCAACAAAGGAGACGTCTTTGTATTCCCTAGAGC
EV527239       --> CTCATCTCCAAACACATCAACAAGGGTGACGTCTTTGTATTCCCAAGAGC
EX754831       --> CTCATCTCCAAACACATCAACAAAGGAGACGTCTTTGTATTCCCTAGAGC

               497    -    547
UN09359        --> TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
FD966575       <-- TTTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
FD538875       <-- TTTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
EY901117       --> TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
FD542934       --> TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
EV524974       --> TCTCCTCCATTTCCAGCAGAACCCTAACGATGCTCCTGCCTCCGTGATTG
EX888852       --> TCTCCTCCATTTCCAGCAGAACCCTAACGACGCTCCTGCCTCCGTGATTG
EW732484       --> TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
EY906817       --> ..................................................
EY908384       --> TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
EY949073       --> TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
FD956939       --> TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
FD970141       --> TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
EV527239       --> TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG
EX754831       --> TCTCCTCCATTTCCAGCAGAACCCTAACAACGCTCCTGCCTCCGTGATTG

               547    -    597
UN09359        --> CTGCTTTCGATAGTCAAAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- CTGCTTTCGATAGTCAAAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966575       <-- CTGCTTTCGATAGTCAAAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538875       <-- CTGCTTTCGATAGTCAAAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901117       --> CTGCTTTCGATAGTCAGAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus raphanistrum subsp. maritimus
FD542934       --> CTGCTTTCGATAGTCAAAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV524974       --> CTGCTTTCGATAGTCAGAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus raphanistrum subsp. maritimus
EX888852       --> CTGCTTTCGATAGTCAGAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus sativus var. oleiformis
EW732484       --> CTGCTTTCGATAGTCAAAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus sativus cv Rat-Tail Radish #3870
EY906817       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908384       --> CTGCTTTCGATAGTCAAAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY949073       --> CTGCTTTCGATAGTCAAAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD956939       --> CTGCTTTCGATAGTCAAAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD970141       --> CTGCTTTCGATAGTCAAAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527239       --> CTGCTTTCGATAGTCAGAACCCTGGGACTCAAAGTGTTGGACCGTCTCTG  Raphanus raphanistrum subsp. maritimus
EX754831       --> CTGCTTTCGATAGTCAAAACC.............................  Raphanus raphanistrum subsp. raphanistrum (MS)

               597    -    647
UN09359        --> TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAGGCGTTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAGGCGTTCGG
FD966575       <-- TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAGGCGTTCGG
FD538875       <-- TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAGGCGTTCGG
EY901117       --> TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAGGCGTTCGG
FD542934       --> TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAGGCGTTCGG
EV524974       --> TTTGGTGCTAACCCTCCTATTCCCGATGACTTGCTTGCCAAG-CGTTCGG
EX888852       --> TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAGGCGTTCGG
EW732484       --> TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCT---CAAGGCGTTCGG
EY906817       --> ..................................................
EY908384       --> TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGC............
EY949073       --> TTTG-CGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAGGCGTTCGG
FD956939       --> TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAG-CGTTCGG
FD970141       --> TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAGcgt.....
EV527239       --> TTTGGTGCTAACCCTCCTATTCCTGATGACTTGCTTGCCAAGGCGTTCGG
EX754831       --> ..................................................

               647    -    697
UN09359        --> TGTTGAACCACAGGTGATTCAGAAGGTTAAGGGAAAATTCCCAGCCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- TGTTGAACCACAGGTGATTCAGAAGGCTAAGGGAAAATTCCCAGCCAAGA
FD966575       <-- TGTTGAACCACAGGTGATTCAGAAGGTTAAGGGAAAATTCCCAGCCAAGA
FD538875       <-- TGTTGAACCACAGGTGATTCAGAAGGTTAAGGGAAAATTCCCAGCCAAGA
EY901117       --> TGTTGAACC.........................................
FD542934       --> TGTTGAACCACAGGTGATTCAGAAG-TTAAGGGAAAATTCCCAGCCAAGA
EV524974       --> TGTTGAACCACAG-TGATTCA.............................
EX888852       --> TGTTGAACC.........................................
EW732484       --> TGTTGAACCACAGGTGATTCA.............................
EY906817       --> ..................................................
EY908384       --> ..................................................
EY949073       --> TGTTGAACCACAG-TGATTCA.............................
FD956939       --> TGTTGAACCACAG-TGATTC..............................
FD970141       --> ..................................................
EV527239       --> TGTTGAACCACAGGTGATTCAGAAGGTTAAGGGAAAATTCCCAG......
EX754831       --> ..................................................

               697    -    747
UN09359        --> AATGAATATAGGTTTCAGACCATATCTAATAATGTAATAATAATATACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- AATGAATATAGGTTTCAGACCATATCTAATAATGTAATAATAATATACAA
FD966575       <-- AATGAATATAGGTTTCAGACCATATCTAATAATGTAATAATAATATACAA
FD538875       <-- AATGAATATAGGTTTCAGACCATATCTAATAATGTAATAATAATATACAA
EY901117       --> ..................................................
FD542934       --> AATGAATATAG-TTTCAGACCATATCTAATAATGTA-TA-TA-TATACAA
EV524974       --> ..................................................
EX888852       --> ..................................................
EW732484       --> ..................................................
EY906817       --> ..................................................
EY908384       --> ..................................................
EY949073       --> ..................................................
FD956939       --> ..................................................
FD970141       --> ..................................................
EV527239       --> ..................................................
EX754831       --> ..................................................

               747    -    797
UN09359        --> ATAATGAACATAAAAGTTTGTAAACTACTAAACAAAAGCAAAGAGTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- ATAATGAACATAAAAGTTTGTAAACTACTAAACAAAAGCAAAGAATGCTT
FD966575       <-- ATACTGAACATAAAAGTTTGTAAACTACTAAACAAAAGCAAAGAATGCTT
FD538875       <-- ATAATGAACATAAAAGTTTGTAAACTACTAAACAAAAGCAAAGAGTGCTT
EY901117       --> ..................................................
FD542934       --> ATA-TGAACATAAA-GTTTGTAAACTACTAAACAAA-GCAAAGAGTGCTT
EV524974       --> ..................................................
EX888852       --> ..................................................
EW732484       --> ..................................................
EY906817       --> ..................................................
EY908384       --> ..................................................
EY949073       --> ..................................................
FD956939       --> ..................................................
FD970141       --> ..................................................
EV527239       --> ..................................................
EX754831       --> ..................................................

               797    -    847
UN09359        --> GTGAGTTTTGTAATCGTTGTAGATATTCTGTAACTTTTTCGGTCCACTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- GTGAGTTTTGTAATCGTTGTAGATATTCTGTAACTTTTTCGGTCCACTGA
FD966575       <-- GTGAGTTTTGTAATCGTTGTAGATATTCTGTAACTTTTTCGGTCCACTGA
FD538875       <-- GTGAGTTTTGTAATCGTTGTAGATATTCTGTAACTTTTTCGGTCCACTGA
EY901117       --> ..................................................
FD542934       --> GTGAGT............................................
EV524974       --> ..................................................
EX888852       --> ..................................................
EW732484       --> ..................................................
EY906817       --> ..................................................
EY908384       --> ..................................................
EY949073       --> ..................................................
FD956939       --> ..................................................
FD970141       --> ..................................................
EV527239       --> ..................................................
EX754831       --> ..................................................

               847    -    897
UN09359        --> TTACAATGAGACAGGTTAAAAATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
EX759066       <-- TTACAATGA................
FD966575       <-- TTACAATGAGACAGGTTAAAAATCG
FD538875       <-- TTACAATGA................
EY901117       --> .........................
FD542934       --> .........................
EV524974       --> .........................
EX888852       --> .........................
EW732484       --> .........................
EY906817       --> .........................
EY908384       --> .........................
EY949073       --> .........................
FD956939       --> .........................
FD970141       --> .........................
EV527239       --> .........................
EX754831       --> .........................