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Alignment for radish unigene UN09378

               1      -     51
UN09378        --> AGGCAATCTATCTATGGAGAAAAAGAGCATGTTCATTGAACAAAGCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> AGGCAATCTATCTATGGAGAAAAAGAGCATGTTCATTGAACAAAGCTTCA
FD946709       --> ..........................GCATGTTCATTGAACAAAGCTTCA
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               51     -    101
UN09378        --> CTGATAACAAGAGTGGCGATATGAACAAAAACTTTGACGATGATGGACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> CTGATAACAAGAGTGGCGATATGAACAAAAACTTTGACGATGATGGACGC
FD946709       --> CTGATAACAAGAGTGGCGATATGAACAAAAACTTTGACGATGATGGACGC
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               101    -    151
UN09378        --> GAGAAAAGAACAGGGACTTGGATGACGGTGAGCGCCCATATCATAACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> GAGAAAAGAACAGGGACTTGGATGACGGTGAGCGCCCATATCATAACAGC
FD946709       --> GAGAAAAGAACAGGGACTTGGATGACGGGGAGCGCCCATATAATAACAGC
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               151    -    201
UN09378        --> GGTGATAGGGTCAGGAGTGTTGTCACTGGCGTGGGCAATTGCACAGCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> GGTGATAGGGTCAGGAGTGTTGTCACTGGCGTGGGCAATTGCACAGCTCG
FD946709       --> GGTGATAGGGTCAGGAGTGTTGTCACTGGCGTGGGCAATTGCACAGCTCG
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               201    -    251
UN09378        --> GATGGGTGGCAGGACCCGCTGTGCTTATGGCTTTTTCCTTCATCACATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> GATGGGTGGCAGGACCCGCCGTGCTTATGGCTTTTTCCTTCATCACATAC
FD946709       --> GATGGGTGGCAGGACCCGCTGTACTTATGGCTTTTTCCTTCATCACATAC
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               251    -    301
UN09378        --> TTTACATCAACCATGCTTGCCGACTGTTATCGTTCCCCAGATCCTGTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> TTTACATCAACCATGCTTGCCGACTGTTATCGTTCCCCAGATCCTGTCAC
FD946709       --> TTTACATCAACCATGCTTGCCGACTGTTATCGTTCCCCAGATCCTGTCAC
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               301    -    351
UN09378        --> CGGAAAACGAAACTATACCTACATGGAAGTTGTCCGCTCTTACTTAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> CGGAAAACGAAACTATACCTACATGGAAGTTGTCCGCTCTTACTTAGGAG
FD946709       --> CGGAAAACGAAACTATACCTACATAGAAGTTCTCCGCTCTTACTTAGGAG
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               351    -    401
UN09378        --> GAAGAAAAGTGATGTTATGTGGATTGGCTCAATACGGGAATCTGATTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> GAAGAAAAGTGATGTTATGTGGATTGGCTCAATACGGGAATCTGATTGGA
FD946709       --> GAAGAAAAGTGATGTTATGTGGATTGGCTCAATACGGGAATCTGATTGGA
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               401    -    451
UN09378        --> ATAACAATCGGCTACACAATCACTGCGTCGATTAGCATGGTGGCAGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> ATAACAATCGGCTACACAATCACTGCGTCGATTAGCATGGTGGCAGTGAA
FD946709       --> ATAACAATCGGCTACACAATCACTGCGTCGATTAGCATGGTGGCAGTGAA
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               451    -    501
UN09378        --> GAGGTCGAATTGTTTCCACGAGAATGGACATAATGTGAAATGTTCCACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> GAGGTCGAATTGTTTCCACGAGAATGGACATAATGTGAAATGTTCCACTT
FD946709       --> GAGGTCGAATTGTTTCCACGAGAATGGACATAATGTGAAATGTTCCACTT
EW724151       --> ..................gGAGAACGGACATAATGTGAAATGTTCCACTT
FD939225       --> ..................................................
EY929627       --> ..................................................

               501    -    551
UN09378        --> CAAACACTCCCTTCATGATCATTTTCGCATGCATCCAAATTGTACTTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> CAAACACTCCCTTCATGATCATTTTCGCATGCATCCAAATTGTACTTAGC
FD946709       --> CAGACACTCCCTTCATGATCATTTTCGCATGCATCCAAATTGTACTTAGC
EW724151       --> CAAACACTCCCTTCATGATCATTTTCGCATGCATCCAAATTGTACTTAGC
FD939225       --> ..................................................
EY929627       --> ..................................................

               551    -    601
UN09378        --> CAAATCCCAAATTTCCACGATCTCTCTTGGCTCTCCATTCTAGCGGCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> CAAATCCCAAATTTCCACGATCTCTCTTGGCTCTCCATTCTAGCGGCCGT
FD946709       --> CAAATCCCAAATTTCCACGATCTCTCTTGGCTCTCCATTCTAGCGGCCGT
EW724151       --> CAGATCCCAAATTTCCACGATCTCTCTTGGCTCTCCATTCTAGCGGCCGT
FD939225       --> ..................................................
EY929627       --> ..................................................

               601    -    651
UN09378        --> AATGTCCTTTTCTTACGCCTCCATTGGTGTCGGTCTCTCCATCGCCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> AATGTCCTTTTCTTACGCCTCCATTGGTGTCGGTCTCTCCATCGCCAAAG
FD946709       --> AATGTCCTTTTCTTACGCCTCCATTGGTGTCGGTCTCTCCATCGCCAAAG
EW724151       --> AATGTCCTTTTCTTACGCCTCCATTGGTGTCGGTCTCTCCATCGCCAAAG
FD939225       --> ..................................................
EY929627       --> ..................................................

               651    -    701
UN09378        --> TGGCCGG-TGGCGGTGTGCACGCAAGGACGGCCCTGACAGGAGTTACGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> TGGCCGGGTGGCGGTGTGCACGCAAGGGCGGCCCTGACAG-AG-TACGGT
FD946709       --> TGGCCGG-TGGCGGTGTGCACGCAAGGACGGCCCTGACAGGAGTTACG-T
EW724151       --> TGGCCGG-TGGCGGTGTGCACGCAAGGACGGCCCTGACAGGAGTTACGGT
FD939225       --> gGGCCGG-TGGCGGTGTGCACGCAAGGACGGCCCTGACAGGAGTTACGGT
EY929627       --> ..................................................

               701    -    751
UN09378        --> CGGAGTTGATGTTACTGGTTCTGAGAAAGTTTGGAGAACATTCCAAGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> CGGAGTTGATGTAACTGGTTCTGAGAAAGT....................
FD946709       --> CGGAGTTGATGTTACTGGTTCTGAGAAAGTT-GGAGA-CATTCCAAGCGG
EW724151       --> CGGAGTTGATGTTACTGGTTCTGAGAAAGTTTGGAGAACATTCCAAGCGG
FD939225       --> CGGAGTTGATGTTACTGGTTCTGAGAAAGTTTGGAGAACATTCCAAGCGG
EY929627       --> ..................................................

               751    -    801
UN09378        --> TTGGAGATATCGCATTTGCTTATGCCTACTCAACCGTACTTATTGAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> ..................................................
FD946709       --> TTGGAGATATCGCATTTGCTTATGCtac......................
EW724151       --> TTGGAGATATCGCATTTGCTTATGCCTACTCAACCGTACTTATTGAGATA
FD939225       --> TTGGAGATATCGCATTTGCTTATGCCTACTCAACTGTACTTATTGAGATA
EY929627       --> .........................gTACTCAACCGTACTTATTGAGATA

               801    -    851
UN09378        --> CAGGACACCTTAAAAGCAAGTCCACCATCAGAAAACAAAGCCATGAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> CAGGACACCTTAAAAGCAAGTCCACCATCAGAAAACAAAGCCATGAAAAG
FD939225       --> CAGGACACCTTAAAAGCAAGTCCACCATCAGAAAACAAAGCCATGAAAAG
EY929627       --> CAGGACACCTTAAAAGCAAGTCCACCATCAGAAAACAAAGCCATGAAAAG

               851    -    901
UN09378        --> AGCAAGCCTTGTGGGTGTATCCACAACGACCTTCTTTTACATGTTATGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> AGCAAGCCTTGTGGGTGTATCCACAACGACCTTCTTTTACATGTTATGCG
FD939225       --> AGTAAGCCTTGTGGGTGTATCCACAACGACCTTCTTTTACATGTTATGCG
EY929627       --> AGCAAGCCTTGTGGGTGTATTCACAACGACCTTCTTTTACATGTTATGCG

               901    -    951
UN09378        --> GGTGTGTGGGTTATGCAGCCTTTGGAAATAATGCGCCTGGAAATTTCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- ..................................................
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> GGTGTGTGGGTTATGCAGCCTTTGGCAATAATGCGCCTGGAAATTTCCTA
FD939225       --> GGTGTGTGGGTTATGCAGCCTTTGGAAATAATGCGCCTGGAAATTTCCTA
EY929627       --> GGTGTGTGGGTTATGCAGCCTTTGGAAATAATGCGCCTGGAAATTTCCTA

               951    -   1001
UN09378        --> ACCGGTTTTGGTTTTTATGAGCCCTTCTGGCTAATCGACTTTGCCAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- .................TGAGCCCTTCTGGCTAATCGACTTTGCCAATGT
EY909697       <-- .....................................ACTTTGCCAATGT
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> ACCGGTTTTGGTTTTTATGAGCCCTTCTGGCTAATCGACTTTGCCAATGT
FD939225       --> ACCGGTTTTGGTTTTTATGAGCCCTTCTGGCTAATCGACTTTGCCAATGT
EY929627       --> ACCGGTTTTGGTTTTTATGAGCCCTTCTGGCTAATCGACTTTGCCAATGT

               1001   -   1051
UN09378        --> CTGCATCGCCGTGCATCTCGTTGGGGCCTATCAGGTCTTTTGCCAGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- CTGCATCGCCGTGCATCTCGTTGGGGCCTATCAGGTCTTTTGCCAGCCAA
EY909697       <-- CTGCATCGCCGTGCATCTCGTTGGGGCCTATCAGGTCTTTTGCCAGCCAA
EW728683       <-- ...CATCGCCGTGCATCTCGTTGGGGCCTATCAGGTCTTTTGCCAGCCAA
FD942777       <-- .......GCCGTGCATCTCGTTGGGGCCTATCAGGTCTTTTGCCAGCCAA
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> CTGCATCGCCGTGCATCTCGTTGGGGCCTATCAGGTCTTTTGCCAGCCAA
FD939225       --> CTGCATCGCCGTGCATCTCGTTGGGGCCTATCAGGTCTTTTGCCAGCCAA
EY929627       --> CTGCATCGCCGTGCATCTCGTTGGGGCCTATCAGGTCTTTTGCCAGCCAA

               1051   -   1101
UN09378        --> TCTTTCAATTTGTAGAGAGCCAGAGTGCAAAACGTTGGCCAGATAACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- TCTTTCAATTTGTAGAGGGCCAGAGTGCAAAACGTTGGCCAGATAACAAG  Raphanus sativus cv Rat-Tail Radish #3870
EY909697       <-- TCTTCCAATTTGTAGAGAGCCAGAGTGCAAAACGTTGGCCAGATAACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW728683       <-- TCTTTCAATTTGTAGAGAGCCAGAGTGCAAAACGTTGGCCAGATAACAAG  Raphanus sativus cv Early Scarlet Globe
FD942777       <-- TCTTTCAATTTGTAGAGAGCCAGAGTGCAAAACGTTGGCCAGATAACAAG  Raphanus sativus cv Early Scarlet Globe
EY913476       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946709       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW724151       --> TCTTTCAATTTGTAGAGAGCCAGAGTGCAAAACGTTGGCCAGATAACAAG  Raphanus sativus cv Early Scarlet Globe
FD939225       --> TCTTCCAATTTGTAGAGAGCCAGAGTGCAAAACGTTGGCCAGATAACAAG  Raphanus sativus var. oleiformis
EY929627       --> TCTTCCAATTTGTAGAGAGCCAGAGTGCAAAACGTTGGCCAGATAACAAG  Raphanus sativus var. oleiformis

               1101   -   1151
UN09378        --> TTTATTACTGGAGAGTACAAAATGAACGTCCCTTGCGGTGGTGATTTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- TTTATTACTGGAGAGTACAAAATGAACGTCCCTTGCGGTGGTGATTTCGG
EY909697       <-- TTTATTACTGGAGAGTACAAAATGAACGTCCCTTGCGGTGGTGATTTCGG
EW728683       <-- TTTATTACTGGAGAGTACAAAATGAACGTCCCTTGCGGTGGTGATTTCGG
FD942777       <-- TTTATTACTGGAGAGTACAAAATGAACGTCCCTTGCGGTGGTGATTTCGG
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> TTTATTACTGGAGAGTACAAAATGAACGTCCCTTGCGGTGGTGATTTCGG
FD939225       --> TTTATTACAGGAGAGTACAAAATGAACGTCCCTTGCGGTGGTGATTTCGG
EY929627       --> TTTATTACAGGAGAGTACAAAATGAACGTCCCTTGCGGTGGTGATTTCGG

               1151   -   1201
UN09378        --> TATCAGTTTGTTCAGATTGGTTTGGAGGACTTCATATGTTGTAGTCACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- TATCAGTTTGTTCAGATTGGTTTGGAGGACTTCATATGTTGTAGTCACCG
EY909697       <-- TATCAGTTTGTTCAGATTGGTTTGGAGGACTTCATATGTTGTAGTCACCG
EW728683       <-- TATCAGTTTGTTCAGATTGGTTTGGAGGACTTCATATGTTGTAGTCACCG
FD942777       <-- TATCAGTTTGTTCAGATTGGTTTGGAGGACTTCATATGTTGTAGTCACCG
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> TATCAGTTTGTTCAGATTGGTTTGGAGGACTTCATATGTTGTAGTCACCG
FD939225       --> TATCAGTTTGTTCAGATTGGTTTGGAGGACTTCATACGTTGTAGTCACCG
EY929627       --> TATCAGTTTGTTCAGATTGGTTTGGAGGACTTCATACGTTGTAGTCACCG

               1201   -   1251
UN09378        --> CGGTCGTAGCAATGATCTTCCCTTTCTTCAACGATTTCTTGGGTCTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- CGGTCGTAGCAATGATCTTCCCTTTCTTCAACGATTTCTTGGGTCTTATT
EY909697       <-- CGGTCGTAGCAATGATCTTCCCTTTTTTCAACGATTTCTTGGGTTTTATT
EW728683       <-- CGGTCGTAGCAATGATTTTCCCTTTTTTCAACGATTTCTTGGGTTTTATT
FD942777       <-- CGGTCGTAGCAATGATCTTCCCTTTCTTCAACGATTTCTTGGGTCTTATT
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> CGGTCGTAGCAATGATCTTCCCTTTCTTCAACGATTTCTTGGGTCTatt.
FD939225       --> CGGTCGTAGCAATGATCTTCCCTTTCTTCAACGATTTCTTGGGTCTTATT
EY929627       --> CGGTCGTAGCAATGATCTTCCCTTTCTTCAACGATTTCTTGGGTCTTATT

               1251   -   1301
UN09378        --> GGAGCAGCTTCCTTCTGGCCTTTGACTGTTTACTTTCCCATTGAGATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- GGAGCAGCTTCCTTCTGGCCTTTGACTGTTTACTTTCCCATTGAGATGCA
EY909697       <-- GGAGCAGCTTCCTTCTGGCCTTTGACTTCTTACTTTCCCATTGAGATGCA
EW728683       <-- GGAGCAGCTTCCTTTTGGCCTTTGACTGTTTACTTTCCCATTGAGATGCA
FD942777       <-- GGAGCAGCTTCCTTCTGGCCTTTGACTGTTTACTTTCCCATTGAGATGCA
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> ..................................................
FD939225       --> GGA...............................................
EY929627       --> GGAGCAGCTTCCTTCTGGCCTTTGACTGTTTACTTTCCCATTGAGATGCA

               1301   -   1351
UN09378        --> TATTGCTCAGAAAAAGATGAAGAAATTTTCTTTCACTTGGACATGGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- TATTGCTCAGAAAAAGATGAAGAAATTTTCTTTCACTTGGACATGGCTGA
EY909697       <-- TATTGCTCAGAAAAAGATGAAGAAATTTTCTTTCACTTGGACATGGCTGA
EW728683       <-- TATTGCTCAGAAAAGGATGAAGAAATTTTCTTTCACTTGGACATGGCTGA
FD942777       <-- TATTGCTCAGAAAAGGATGAAGAAATTTTCTTTCACTTGGACATGGCTGA
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> TATTGCTCAGAAAAAGATGAAGAAATTTTCTTTCACTTGGACATGGCTGA

               1351   -   1401
UN09378        --> AAATCTTGAGCTGGGCTTGTTTCCTCGTCTCCCTCGTTGCTGCTGCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- AAATCTTGAGCTGGGCTTGTTTCCTCGTCTCCCTCGTTGCTGCTGCTGGA
EY909697       <-- AAATCTTGAGCTGGGCTTGTTTCCTCGTCTCCCTCGTTGCTGCTGCTGGA
EW728683       <-- AAATCTTGAGCTGGGCTTGTTTCCTCGTCTCCCTCGTTGCTGCTGCTGGA
FD942777       <-- AAATCTTGAGCTGGGCTTGTTTCCTCGTCTCCCTCGTTGCTGCTGCTGGA
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> AAATCTTGAGCTGGGCTTGTTTCCTCGTCTCCCTCGTTGCTGCTGCTGGA

               1401   -   1451
UN09378        --> TCTGTGCAAGGACTCATACAAAGTCTTAAGGATTTCAAGCCTTTCCAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- TCTGTGCAAGGACTCATACAAAGTCTTAAGGATTTCAAGCCTTTCCAAGC
EY909697       <-- TCTGTGCAAGGACTCATACAAAGTTTTAAGGATTTCAAGCCTTTCCAAGC
EW728683       <-- TCTGTGCAAGGACTCATACAAAGTTTTAAGGATTTCAAGCCTTTCCAAGC
FD942777       <-- TCTGTGCAAGGACTCATACAAAGTCTTAAGGATTTCAAGCCTTTCCAAGC
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> TCTGTGCAAGGACTCATACAAAGTCTTAAGGATTTCAAGCCTTTCCAGGC

               1451   -   1501
UN09378        --> TCCCGAGTAGAAACTGTGTTTTGTCTAATGTCTTCAAGAACACAACTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- TCCCGAGTAGAAACTGTGTTTTGTCTAATGTCTTCAAGAACACAACTCCC
EY909697       <-- TCCCGAGTAGAAACTGTGTTTTGTCTAATGTCTTCAAGAACACAACTCCC
EW728683       <-- TCCCGAGTAGAAACTGTGTTTTGTTTAATGTTTTCAAGAACACAACTCCC
FD942777       <-- TCCCGAGTAGAAACTGTGTTTTGTCTAATGTCTTCAAGAACACAACTCCC
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> TCCCGAGTAGAA......................................

               1501   -   1551
UN09378        --> TTGCACTCTCTTTTCTCCAATAACTGTGTATGTTCGTTTGTAATATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- TTGCACTCTCTTTTCTCCAATAACTATGTATGTTCGTTTGTAATATATTT
EY909697       <-- TTGCACTCTCTTTTCTCCAATAACTGTGTATGTTCGTTTGTAATATATTT
EW728683       <-- TTGCACTCTCTTTTCTCCAATAACTGTGTATGTTCGTTTGTAATATATTT
FD942777       <-- TTGCACTCTCTTTTCTCCAATGACTGTGTATGTTCGTTTGTAATATATTT
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               1551   -   1601
UN09378        --> GTGTTTTTGTTTCATTACGAAATGTTCAACCTATATTTGCTTGTTTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- GTGTTTTTGTTTCATTACGAAATGTTCAACCTATATTTGCTTGTTTGAAA
EY909697       <-- GTGTTTTTGTTTCATTACGAAATGTTCAACCTATATTTGCTCGTTTGAAA
EW728683       <-- GTGTTTTTGTTTCATTACGAAATGTTCAACCTATATTTGCTTGTTTGAAA
FD942777       <-- GTGTTTTTGTTTCATTACGAAATGTTCAACCT..................
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               1601   -   1651
UN09378        --> CAAATCTATCATCAATAAGTCCCTCTTTCTTTTCTTTGTCCTTGGTACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- CAAATCTATCATCAATAAGTCCCTCTTTCTTTTCTTTGTCg.........
EY909697       <-- CAAATCTATCATCAATAAGTCCCTCTTTCTTTTCTTTGTCCTTGGTACCT
EW728683       <-- CAAATCTATCATCAATAAGTCCCTCTTTCTTTT.................
FD942777       <-- ..................................................
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               1651   -   1701
UN09378        --> CAGTTTCTTTTTTTTTTTTTTATGAGAAGTATGATAATGTGATGAGATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW739264       <-- ..................................................
EY909697       <-- CAGTTTCTTTTTTTTTTTTTTATGAGAAGTATGATAATGTGATGAGATAG
EW728683       <-- ..................................................
FD942777       <-- ..................................................
EY913476       --> ..................................................
FD946709       --> ..................................................
EW724151       --> ..................................................
FD939225       --> ..................................................
EY929627       --> ..................................................

               1701   -   1751
UN09378        --> GCTG
                   ~~~~
EW739264       <-- ....
EY909697       <-- GCTG
EW728683       <-- ....
FD942777       <-- ....
EY913476       --> ....
FD946709       --> ....
EW724151       --> ....
FD939225       --> ....
EY929627       --> ....