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Alignment for radish unigene UN09495

               1      -     51
UN09495        --> AGAAGTAACAGAGCATTCACATAGAAGAAAAAGAAAGCAGAGGAACATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- .GAAGTAACAGAGCATTCACATAGAAGAAAAAGAAAGCAGAGGAACATAG
FY453503       <-- ..................................................
FY452741       <-- ..................................................
FY452504       <-- ..................................................
FY431752       <-- ..................................................
FD560850       <-- ..................................................
FD988341       <-- ..................................................
FD938100       <-- ..................................................
EY905900       <-- ..................................................
EY902224       --> AGAAGTAACAGAGCATTCACATAGAAGAAAAAGAAAGCAGAGGAACATAG
FD984249       --> ..................................................

               51     -    101
UN09495        --> AGAATATATGTATATATATATATAGAATAGTTTTAAAGTCTATGCGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- AGAATATATGTATATATATATATAGAATAGTTTTAAAGTCTATGCGCTTG
FY453503       <-- ..AATATATGTATATATATATATAGAATAGTTTTAAAGTCTATGCGCTTG
FY452741       <-- ....TATATGTATATATATATATAGAATAGTTTTAAAGTCTATGCGCTTG
FY452504       <-- ..................................................
FY431752       <-- ..................................................
FD560850       <-- ..................................................
FD988341       <-- ..................................................
FD938100       <-- ..................................................
EY905900       <-- ..................................................
EY902224       --> AGAATATATGTATATATATATA--GAATAGTTTTAAAGTCTACGCGCTTG
FD984249       --> .......acatgTATATATATATAGAATAGTTTTAAAGTCTATGCGCTTG

               101    -    151
UN09495        --> TTGCACATTCTCGAGGGATTCCCTGTGGGAACCTCTTACTATCCGTACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- TTGCACATTCTCGAGGGATTCCCTGTGGGAACCTCTTACTATCCGTACAA
FY453503       <-- TTGCACATTCTCGAGGGATTCCCTGTGGGAACCTCTTACTATCCGTACAA
FY452741       <-- TTGCACATTCTCGAGGGATTCCCTGTGGGAACCTCTTACTATCCGTACAA
FY452504       <-- ..........TCGAGGGATTCCCTGTGGGAACCTCTTACTATCCGTACAA
FY431752       <-- .................................TCTTACTATCCGTACAA
FD560850       <-- ..................................................
FD988341       <-- ..................................................
FD938100       <-- ..................................................
EY905900       <-- ..................................................
EY902224       --> TTGCACATTCTCGAGGGATTCCCTGTGGGAACCTCTTACTATCCGTACAA
FD984249       --> TTGCACATTCTCGAGGGATTCCCTGTGGGAACCTCTTACTATCCGTACAA

               151    -    201
UN09495        --> TAATTGTAGATCATGTAATTCTTCTGGACCCACCTGAGCCTAGCTTGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- TAATTGTAGATCATGTAATTCTTCTGGACCCACCTGAGCCTAGCTTGGCT
FY453503       <-- TAATTGTAGATCATGTAATTCTTCTGGACCCACCTGAGCCTAGCTTGGCT
FY452741       <-- TAATTGTAGATCATGTAATTCTTCTGGACCCACCTGAGCCTAGCTTGGCT
FY452504       <-- TAATTGTAGATCATGTAATTCTTCTGGACCCACCTGAGCCTAGCTTGGCT
FY431752       <-- TAATTGTAGATCATGTAATTCTTCTGGACCCACCTGAGCCTAGCTTGGCT
FD560850       <-- .tATTGTAGATCATGTAAT-CTTCTG-ACCCACCCGAGCCTAGCT-GGCT
FD988341       <-- ..................................................
FD938100       <-- ..................................................
EY905900       <-- ..................................................
EY902224       --> TAATTGTAGATCATGTAATTCTTCTGGACCCACCTGAGCCTAGCTTGGCT
FD984249       --> TAATTGTAGATCATGCAATTCTTCTGGACCCACCTGAGCCTAGCTTGGCT

               201    -    251
UN09495        --> CGTCGAATCCATTTGTTGAGTGTACCAATTAGAGGTTGGTCTCGTCGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- CGTCGAATCCATTTGTTGAGTGTACCAATTAGAGGTTGGTCTCGTCGAGC
FY453503       <-- CGTCGAATCCATTTGTTGAGTGTACCAATTAGAGGTTGGTCTCGTCGAGC
FY452741       <-- CGTCGAATCCATTTGTTGAGTGTACCAATTAGAGGTTGGTCTCGTCGAGC
FY452504       <-- CGTCGAATCCATTTGTTGAGTGTACCAATTAGAGGTTGGTCTCGTCGAGC
FY431752       <-- CGTCGAATCCATTTGTTGAGTGTACCAATTAGAGGTTGGTCTCGTCGAGC
FD560850       <-- CGTCGA-TCCATTTGTTGAGTGTACCAATTAGAGGTTG-TCTCGTCGAGC
FD988341       <-- ..................................................
FD938100       <-- ..................................................
EY905900       <-- ..................................................
EY902224       --> CGTCGAATCCATTTGTTGAGTGTACCAATTAGAGGTTGGTATCGTCGAGC
FD984249       --> CGTCGAATCCATTTGTTGAGTGTACCAATTAGAGGTTGCTCTCGTCGAGC

               251    -    301
UN09495        --> TACAAGACGACCTTCCGTTGGGATGAATACAACCGTCGCACTTAATTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- TACAAGACGACCTTCCGTTGGGATGAATACAACCGTCGCACTTAATTTTC
FY453503       <-- TACAAGACGACCTTCCGTTGGGATGAATACAACCGTCGCACTTAATTTTC
FY452741       <-- TACAAGACGACCTTCCGTTGGGATGAATACAACCGTCGCACTTAATTTTC
FY452504       <-- TACAAGACGACCTTCCGTTGGGATGAATACAACCGTCGCACTTAATTTTC
FY431752       <-- TACAAGACGACCTTCCGTTGGGATGAATACAACCGTCGCACTTAATTTTC
FD560850       <-- TACAAGACGAC-TTCCGTTGGCATGAACACACCCGTCGCACTTAATTTTC
FD988341       <-- ..................................................
FD938100       <-- ..................................................
EY905900       <-- ..................................................
EY902224       --> TACAAGACGGCCTTCCGTTGGGATGAATACAACCGTCGCACTTAATTTTC
FD984249       --> TACAAGACGACCTTCCGTTGGGATGAATACAACCGTCGCACTTAATTTTC

               301    -    351
UN09495        --> CTGTAAGAAGCCACGAAAGGAGCTTTGGACCAATCTGTTTTAACCAGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- CTGTAAGAAGCCACGAAAGGAGCTTTGGACCAATCTGTTTTAACCAGACC
FY453503       <-- CTGTAAGAAGCCACGAAAGGAGCTTTGGACCAATCTGTTTTAACCAGACC
FY452741       <-- CTGTAAGAAGCCACGAAAGGAGCTTTGGACCAATCTGTTTTAACCAGACC
FY452504       <-- CTGTAAGAAGCCACGAAAGGAGCTTTGGACCAATCTGTTTTAACCAGACC
FY431752       <-- CTGTAAGAAGCCACGAAAGGAGCTTTGGACCAATCTGTTTTAACCAGACC
FD560850       <-- -TGTAAGAAGCCACGAAAGGAGCTTTGGACCAATCTGTTTTAACCAGACC
FD988341       <-- ....AAGAAGCCACGAAAGGAGCTTTGGACCAATCTGTTTTAACCAGACC
FD938100       <-- ...........................GACCAATCTGTTTTAACCAGACC
EY905900       <-- ..................................................
EY902224       --> CTGTAAGAAGCCACGAAAGGAGCTTTGGACCAATCTGTTTTAACCAGACC
FD984249       --> CTGTAAGAAGCCACGAAAGGAGCTTTGGACCAATCTGTTTTAACCAGACC

               351    -    401
UN09495        --> GCCTCTAGTTGCCCAATCATCTGCGTTCCACAAACTCGCGTACATCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- GCCTCTAGTTGCCCAATCATCTGCGTTCCACAAACTCGCGT.........
FY453503       <-- GCCTCTAGTTGCCCAATCATCTGCGTTCCACAAACTCGCGTACATCCTCA
FY452741       <-- GGCTCTAGTTGCCCAATCATCTGCGTTCCACAAACTCGCGTACATCCTCA
FY452504       <-- GCCTCTAGTTGCCCAATCATCTGCGTTCCACAAACTCGCGTACATCCTCA
FY431752       <-- GCCTCTAGTTGCCCAATCATCTGCGTTCCACAAACTCGCGTACATCCTCA
FD560850       <-- ACCTCTAGTTGCCCAATCATCTGCGTTCCATAAACTCGCGTACATTCTCA
FD988341       <-- GCCTCTAGTTGCCCAATCATCTGCGTTCCACAAACTCGCGTACATCCTCA
FD938100       <-- -ACTCTAGTTGCCCAATCATCTGCGTTCCATAAACTCGCGTACATTCTCA
EY905900       <-- ......AGTTGCCCAATCATCTGCGTTCCACAAACTCGCGTACATCCTCA
EY902224       --> GCCTCTAGTTGCCCAATCATCTGCGTTCCACAAACTCGCGTACATCCTCA
FD984249       --> GCCTCTAGTTGCCCAATCATCTGCGTTCCACAAACTCGCGTACATCCTCA

               401    -    451
UN09495        --> TCGGCTTGCTCTTTGGAAACAAAACACCGAGCGGCTCAGAGTTCTTGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................  Raphanus sativus cv GSK3-1
FY453503       <-- TCGGCTTGCTCTTTGGAGACAAAACACCGAGCGGCTCAGAGTTCTTGAAC  Raphanus sativus cv GSK3-1
FY452741       <-- TCGGCTTGCTCTTTGGAGACAAAACACCGAGCGGCTCAGAGTTCTTGAAC  Raphanus sativus cv GSK3-1
FY452504       <-- TCGGCTTGCTCTTTGGAGACAAAACACCGAGCGGCTCAGAGTTCTTGAAC  Raphanus sativus cv GSK3-1
FY431752       <-- TCGGCTTGCTCTTTGGAGACAAAACACCGAGCGGCTCAGAGTTCTTGAAC  Raphanus sativus cv GSK3-1
FD560850       <-- TCGGCTTGCTCTTTGGAAACAAAACACCGAGCGGCTCAGAGTTCTTGAAC  Raphanus sativus var. oleiformis
FD988341       <-- TCGCCTTGCTCTTTGGAAACAAAACACCGAGCGGCTCAGAGTTCTTGAAC  Raphanus raphanistrum subsp. landra
FD938100       <-- TCGGCTTGCTCTTTGGAAACAAAACACCGAGCGGCTCAGAGTTCTTGAAC  Raphanus sativus var. oleiformis
EY905900       <-- TCGGCTTGCTCTTTGGAAACAAAACACCGAGCGGCTCAGAGTTCTTGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902224       --> TCGGCTTGCTCTTTGGAAACAAAACACCGAGCGGCTCAAAGTTCTTGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD984249       --> TCGCCTTGCTCTTTGGAAACAAAACACCGAGCGGCTCAAAGTTCTTGAAC  Raphanus raphanistrum subsp. landra

               451    -    501
UN09495        --> TCTCTAATCGGTGTATTATCGACGGTCCATATGATTCTTTGAGGGTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................
FY453503       <-- TCTCTAATCGGTGTATTATCGACGGTCCATATGATTCTTTGAGGGTTCCA
FY452741       <-- TCTCTAATCGGTGTATTATCGACGGTCCATATGATTCTTTGAGGGTTCCA
FY452504       <-- TCTCTAATCGGTGTATTATCGACGGTCCATATGATTCTTTGAGGGTTCCA
FY431752       <-- TCTCTAATCGGTGTATTATCGACGGTTAATATGATTCTTTGAGGGTTCCA
FD560850       <-- TCTCTAATCGGTGTATCATCGACGGTCCATATGATTCTTTGAGGGTTCCA
FD988341       <-- TCTCTAATCGGTGTATTATCGACGGTCCATATGATTCTTTGAGGGTTCCA
FD938100       <-- TCTCTAATCGGTGTATCATCGACGGTCCATATGATTCTTTGAGGGTTCCA
EY905900       <-- TCTCTAATCGGTGTATTATCGACGGTCCATATGATTCTTTGAGGGTTCCA
EY902224       --> TCTCTAATCGGTGTATTATCGACGGTCCATATGATTCTTTGAGGGTTCCA
FD984249       --> TCTCTAATCGGTGTATTATCGACGGTCCATATGATTCTTTGAGGGTTCCA

               501    -    551
UN09495        --> GAGGATTGAGTAAGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................
FY453503       <-- GAGGATTGAGTAAGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA
FY452741       <-- GAGGATTGAGTAAGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA
FY452504       <-- GAGGATTGAGTAAGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA
FY431752       <-- GAGGATTGAGTAAGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA
FD560850       <-- GAGGATTGAGTAAGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA
FD988341       <-- GAGGATTGAATAAGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA
FD938100       <-- GAGGATTGAGTAAGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA
EY905900       <-- GAGGATTGAGTACGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA
EY902224       --> GAGGATTGAGTACGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA
FD984249       --> GAGGATTGAATAAGTGTGGAAGTTTGCGGTTGGGTCAAACCAGAGATGGA

               551    -    601
UN09495        --> ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................
FY453503       <-- ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA
FY452741       <-- ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA
FY452504       <-- ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA
FY431752       <-- ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA
FD560850       <-- ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA
FD988341       <-- ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA
FD938100       <-- ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA
EY905900       <-- ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA
EY902224       --> ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA
FD984249       --> ACTGTTGTTCTTTGTCACCTTTACCTTGAGTGTAAACATTAGTATGTAAA

               601    -    651
UN09495        --> GTATAAGGATCTCCACTCATATTACCTAAGAACTCAAAATCAATCTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................  Raphanus sativus cv GSK3-1
FY453503       <-- GTATAAGGATCTCCACTCATATTACCTAAGAACTCAAAATCAATCTCATC  Raphanus sativus cv GSK3-1
FY452741       <-- GTATAAGGATCTCCACTCATATTACCTAAGAACTCAAAATCAATCTCATC  Raphanus sativus cv GSK3-1
FY452504       <-- GTATAAGGATCTCCACTCATATTACCTAAGAACTCAAAATCAATCTCATC  Raphanus sativus cv GSK3-1
FY431752       <-- GTATAAGGATCTCCACTCATATTACCTAAGAACTCAAAATCAATCTCATC  Raphanus sativus cv GSK3-1
FD560850       <-- GTATAAGGATCTCCACTCATATTACCCAAGAACTCAAAATCAATCTCATC  Raphanus sativus var. oleiformis
FD988341       <-- GTATAAGGATCTCCACTCATATTACCTAAGAACTCAAAATCAATCTCATC  Raphanus raphanistrum subsp. landra
FD938100       <-- GTATAAGGATCTCCACTCATATTACCCAAGAACTCAAAATCAATCTCATC  Raphanus sativus var. oleiformis
EY905900       <-- GTATAAGGATCTCCACTCATATTACCCAAGAACTCAAAATCAATCTCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902224       --> GTATAAGGATCTCCACTCATATTACCCAAGAACTCAAAATCAATCTCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD984249       --> GTATAAGGATCTCCACTCATATTACCTAAGAACTCAAAATCAATCTCATC  Raphanus raphanistrum subsp. landra

               651    -    701
UN09495        --> CCAAGCTGATCCTTCTGACTTCAGGTAGAAAGTTGTTACTGTTCCTGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................  Raphanus sativus cv GSK3-1
FY453503       <-- CCAAGCTGATCCTTCTGACTTCAGGTAGAAAGTTGTTACTGTTCCTGCCG  Raphanus sativus cv GSK3-1
FY452741       <-- CCAAGCTGATCCTTCTGACTTCAGGTAGAAAGTTGTTACTGTTCCTGCCG  Raphanus sativus cv GSK3-1
FY452504       <-- CCAAGCTGATCCTTCTGACTTCAGGTAGAAAGTTGTTACTGTTCCTGCCG  Raphanus sativus cv GSK3-1
FY431752       <-- CCAAGCTGATCCTTCTGACTTCAGGTAGAAAGTTGTTACTGTTCCTGCCG  Raphanus sativus cv GSK3-1
FD560850       <-- CCAAGTTGATCCTTCTGACTTCAGGTAGAAAGTTGTTACTGTTCCTGCCG  Raphanus sativus var. oleiformis
FD988341       <-- CCAAGCTGATCCTTCTGACTTCAGGTAGAAAGTTGTTACTGTTCCTGCCG  Raphanus raphanistrum subsp. landra
FD938100       <-- CCAAGTTGATCCTTCTGACTTCAGGTAGAAAGTTGTTACTGTTCCTGCCG  Raphanus sativus var. oleiformis
EY905900       <-- CCAAGTTGATCCTTCTGACTTCAGGTAGAAAGTTGTTACTGTTCCTGCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902224       --> CCAAGTTGATCCTTCTGACTTCAGGTAGAAAGTTGTTAC...........  Raphanus raphanistrum subsp. raphanistrum (MS)
FD984249       --> CCAAGCTGATCCTTCTGACTTCAGGTAGAAAGTTGTTACTGTTCCTGCCG  Raphanus raphanistrum subsp. landra

               701    -    751
UN09495        --> AGTTACCGGGAACTAGCTTAATCTGCATATCGATCTTTCCGAACAAATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................
FY453503       <-- AGTTACCGGGAACTAGCTTAATCTGCATATCGATCTTTCCGAACAAATAC
FY452741       <-- AGTTACCGGGAACTAGCTTAATCTGCATATCGATCTTTCCGAACAAATAC
FY452504       <-- AGTTACCGGGAACTAGCTTAATCTGCATATCGATCTTTCCGAACAAATAC
FY431752       <-- AGTTACCGGGAACTAGCTTAATCTGCATATCGATCTTTCCGAACAAATAC
FD560850       <-- AGTTACCGGGAACTAGCTTAATCTGCATATCGATCTTTCCGAACAAATAC
FD988341       <-- AGTTACCGGGAACTAGCTTAATCTGCATATCGATCTTTCCGAACAAATAC
FD938100       <-- AGTTACCGGGAACTAGATTAATCTGCATATCGATCTTTCCGAACAAATAC
EY905900       <-- AGTTACCGGGAACTAGCTTAATCTGCATATCGATCTTTCCGAACAAATAC
EY902224       --> ..................................................
FD984249       --> AGTTACCGGGAACTAGCTTAATCTGCATATCGATCTTTCCGAACAAATAC

               751    -    801
UN09495        --> TCTGCTTTGGACTGAAAACCAGAACCAGAGGCCTTGTCTAAGGTGAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................
FY453503       <-- TCTGCTTTGGACTGAAAACCAGAACCAGAGGCCTTGTCTAAGGTGAGAGT
FY452741       <-- TCTGCTTTGGACTGAAAACCAGAACCAGAGGCCTTGTCTAAGGTGAGAGT
FY452504       <-- TCTGCTTTGGACTGAAAACCAGAACCAGAGGCCTTGTCTAAGGTGAGAGT
FY431752       <-- TCTGCTTTGGACTGAAAACCAGAACCAGAGGCCTTGTCTAAGGTGAGAGT
FD560850       <-- TCTGCTTTGGACTGAAAACCAGAACCAGAGGCCTTGTCTAAGGTGAGAGT
FD988341       <-- TCTGCTTTGGACTGAAAACCAGAACCAGAGGCCTTGTCTAAGGTGAGAGT
FD938100       <-- TCTGCTTTGGACTGAAAACCAGAACCAGAGGCCTTGTCTAAGGTGAGAGT
EY905900       <-- TCTGCTTTGGACTGAAAACCAGAACCAGAGGCCTTGTCTAAGGTGAGAGT
EY902224       --> ..................................................
FD984249       --> TCTGCTTTGGACTGAAAAC...............................

               801    -    851
UN09495        --> AAGAAGCTGGCCGTTGTTGAGTATCTTCCCACGGCCGTTTCCCCATGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................
FY453503       <-- AAGAAGCTGGCCGTTGTTGAGTATCTTCCCACGGCCGTTTCCCCATGCTA
FY452741       <-- AAGAAGCTGGCCGTTGTTGAGTATCTTCCCACGGCCGTTTCCCCATGCTA
FY452504       <-- AAGAAGCTGGCCGTTGTTGAGTATCTTCCCACGGCCGTTTCCCCATGCTA
FY431752       <-- AAGAAGCTGGCCGTTGTTGAGTATCTTCCCACGGCCGTTTCCCCATGCTA
FD560850       <-- AAGAAGCTGGCCGTTGTTGAGTATCTTCCCACGGCCGTTTCCCCATGCTA
FD988341       <-- AAGAAGCTGGCCGTTGTTGAGTATCTTCCCACGGCCGTTTCCCCATGCTA
FD938100       <-- AAGAAGCTGGCCGTTGTTGAGTATCTTCCCACGGCCGTTTCCCCATGCTA
EY905900       <-- AAGAAGCTGGCCGTTGTTGAGTATCTTCCCACGGCCGTTTCCCCATGCTA
EY902224       --> ..................................................
FD984249       --> ..................................................

               851    -    901
UN09495        --> CGTTGACGTCGCTGTTGAAGTCAGCTGCGGAGGCTGAAAACGCAGCCGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................  Raphanus sativus cv GSK3-1
FY453503       <-- CGTTGACGTCGCTGTTGAAGTCAGCTGCGGAGGCTGAAAACGCAGCCGCG  Raphanus sativus cv GSK3-1
FY452741       <-- CGTTGACGTCGCTGTTGAAGTCAGCTGCGGAGGCTGAAAACGCAGCCGCG  Raphanus sativus cv GSK3-1
FY452504       <-- CGTTGACGTCGCTGTTGAAGTCAGCTGCGGAGGCTGAAAACGCAGCCGCG  Raphanus sativus cv GSK3-1
FY431752       <-- CGTTGACGTCGCTGTTGAAGTCAGCTGCGGAGGCTGAAAACGCAGCCGCG  Raphanus sativus cv GSK3-1
FD560850       <-- CGTTGACGTCGACGTTGAAGTCAGCTGCCGAGGCTGAAAACGCAGCCGCG  Raphanus sativus var. oleiformis
FD988341       <-- CGTTGACGTCGCTGTTGAAGTCAGCTGCCGAGGCTGAAAACGCAGCCGCG  Raphanus raphanistrum subsp. landra
FD938100       <-- CGTTGACGTCGACGTTGAAGTCAGCTGCCGAGGCTGAAAACGCAGCCGCG  Raphanus sativus var. oleiformis
EY905900       <-- CGTTGACGTCGCTGTTGAAGTCAGCTGCCGAGGCTGAAAACGCAGCCGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902224       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD984249       --> ..................................................  Raphanus raphanistrum subsp. landra

               901    -    951
UN09495        --> AGTAGAGCTGAGAAGAAGTATATTTTGAAAGAAGACATCTTTGTGTGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- ..................................................
FY453503       <-- AGTAGAGCTGAGAAGAAGTATATTT-GAAAGAA.................
FY452741       <-- AGTAGAGCTGAGAAGAAGTATATTT-GAAAGAA.................
FY452504       <-- AGTAGAGCTGAGAAGAAGTATATTT-GAAAGAAGACATCT..........
FY431752       <-- AGTAGAGCTGAGAAGAAGTA--TTTTGAAAGAAGACATCT..........
FD560850       <-- AGTAGAGCTGAGAAGAAGTATATTTTGAAAGAAGACATCTTTGTGTGTGC
FD988341       <-- AGTAGAGCTGAGAAGAAGTATATTTTGAAAGAAGACATCTTTGTGTGTGC
FD938100       <-- AGTAGAGCTGAGAAGAAGTATATTTTGAAAGAAGACATCTTTGTGTGTGC
EY905900       <-- AGTAGAGCTGAGAAGAAGTATATTTTGAAAGAAGACATCTTTGTGTGTGC
EY902224       --> ..................................................
FD984249       --> ..................................................

               951    -   1001
UN09495        --> GTGTGTTTGGTGAGGAATGT.....
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
FY430821       <-- .........................
FY453503       <-- .........................
FY452741       <-- .........................
FY452504       <-- .........................
FY431752       <-- .........................
FD560850       <-- GTGTGTTTGGTGAGGAATGTc....
FD988341       <-- GTGTGTTTGGTGAGGAATGTcc...
FD938100       <-- GTGTGTTTGGTGAGGAATGTc....
EY905900       <-- GTGTGTTTGGTGAGGAATGTgagcc
EY902224       --> .........................
FD984249       --> .........................