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Alignment for radish unigene UN09505

               1      -     51
UN09505        --> GCTCAAGATCGGCTACATAGAGCCTTTTATATAAATGAAAAAATGGCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................
EV568694       <-- ..................................................
FD947912       <-- ..................................................
FY443582       <-- ..................................................
FY443324       <-- ..................................................
FD942016       <-- ..................................................
FY441408       <-- ..................................................
FY451734       <-- ..................................................
FY451882       <-- ..................................................
EV549644       <-- ..................................................
FY446392       <-- ..................................................
FD985229       --> GCTCAAGATCGGCTACATAGAGCCTTTTATATAAATGAAAAAATGGCAGT
EV573354       --> ..................................................
EY895188       --> ..................................................
EY919597       --> ..................................................
EX751440       --> ..................................................
FD943773       --> ..................................................
EV545933       --> ..................................................
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> ..................................................

               51     -    101
UN09505        --> ACGCCAGAATCAAAGAAACTTGGTAAATACGACTTGCTTAAATGTAGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..........CAAAGAAACTTTGTAGATACGACTTGCTAAAATGCAGTAA
EV568694       <-- .....................GGTAAATACGACTTGCTTAAATGTAGTAA
FD947912       <-- ..................................................
FY443582       <-- ..................................................
FY443324       <-- ..................................................
FD942016       <-- ..................................................
FY441408       <-- ..................................................
FY451734       <-- ..................................................
FY451882       <-- ..................................................
EV549644       <-- ..................................................
FY446392       <-- ..................................................
FD985229       --> ACGCCAGAATCAAAGAAACTTGGTAAATACGACTTGCTTAAATGTAGTAA
EV573354       --> .....................GGTAAATACGACTTGCTTAAATGTAGTAA
EY895188       --> .....................GGTAAATACGACTTGCTTAAATGTAGTAA
EY919597       --> ...................................GCTTAAATGTAGTAA
EX751440       --> ............................................TAGTAA
FD943773       --> ..................................................
EV545933       --> ..................................................
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> ..................................................

               101    -    151
UN09505        --> TATGTAAAGAGCTATTGTGCTAAAAGAAGACCGTTATTGCTTGCAGTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- TATGTAAAGAGCTATTGTGATAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus sativus cv Early Scarlet Globe
EV568694       <-- TATGTAAAGAGCTATTGTGCTAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus raphanistrum subsp. landra
FD947912       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY443582       <-- ..................................................  Raphanus sativus cv GSK3-1
FY443324       <-- ..................................................  Raphanus sativus cv GSK3-1
FD942016       <-- ..................................................  Raphanus sativus var. oleiformis
FY441408       <-- ..................................................  Raphanus sativus cv GSK3-1
FY451734       <-- ..................................................  Raphanus sativus cv GSK3-1
FY451882       <-- ..................................................  Raphanus sativus cv GSK3-1
EV549644       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446392       <-- ..................................................  Raphanus sativus cv GSK3-1
FD985229       --> TATGTAAAGAGCTATTGTGCTAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus raphanistrum subsp. landra
EV573354       --> TATGTAAAGAGCTATTGTGCTAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus raphanistrum subsp. landra
EY895188       --> TATGTAAAGAGCTATTGTGCTAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus raphanistrum subsp. maritimus
EY919597       --> TATGTAAAGAGCTATTGTGCTAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus raphanistrum subsp. landra
EX751440       --> TATGTAAAGAGCTATTGGGCTAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus raphanistrum subsp. maritimus
FD943773       --> .ATGTAAAGAGCTATTGTGATAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus sativus cv Early Scarlet Globe
EV545933       --> ................GTGCTAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567482       --> ................GTGATAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus sativus var. oleiformis
FD937526       --> ................GTGATAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus sativus var. oleiformis
FD555336       --> ..................GCTAAAAGAAGACCGTTATTGCTTGCAGTAGT  Raphanus raphanistrum subsp. landra

               151    -    201
UN09505        --> GAGTGTCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- GAGTGTCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus sativus cv Early Scarlet Globe
EV568694       <-- GAGTGTCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus raphanistrum subsp. landra
FD947912       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY443582       <-- ..................................................  Raphanus sativus cv GSK3-1
FY443324       <-- ..................................................  Raphanus sativus cv GSK3-1
FD942016       <-- ..................................................  Raphanus sativus var. oleiformis
FY441408       <-- ..................................................  Raphanus sativus cv GSK3-1
FY451734       <-- ..................................................  Raphanus sativus cv GSK3-1
FY451882       <-- ..................................................  Raphanus sativus cv GSK3-1
EV549644       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446392       <-- ..................................................  Raphanus sativus cv GSK3-1
FD985229       --> GAGTGTCACAAAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus raphanistrum subsp. landra
EV573354       --> GAGTGTCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus raphanistrum subsp. landra
EY895188       --> GAGTGCCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus raphanistrum subsp. maritimus
EY919597       --> GAGTGTCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus raphanistrum subsp. landra
EX751440       --> GAGTGTCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus raphanistrum subsp. maritimus
FD943773       --> GAGTGTCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus sativus cv Early Scarlet Globe
EV545933       --> GAGTGTCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567482       --> GAGTGTCACAGAAACATGCTTGAAACAAACCAAAACATTCTAAAAATTGT  Raphanus sativus var. oleiformis
FD937526       --> GAGTGTCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus sativus var. oleiformis
FD555336       --> GAGTGTCACAGAAACATGCTTGAAACAAACCAGAACATTCTAAAAATTGT  Raphanus raphanistrum subsp. landra

               201    -    251
UN09505        --> -GAAAATGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGGCTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- TGAAGAGGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGACTTCTT  Raphanus sativus cv Early Scarlet Globe
EV568694       <-- -GAAAATGTTTTATTTTGATAAATGCAACAATCCCCCCAGATGGCTTCTC  Raphanus raphanistrum subsp. landra
FD947912       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY443582       <-- ..................................................  Raphanus sativus cv GSK3-1
FY443324       <-- ..................................................  Raphanus sativus cv GSK3-1
FD942016       <-- ..................................................  Raphanus sativus var. oleiformis
FY441408       <-- ..................................................  Raphanus sativus cv GSK3-1
FY451734       <-- ..................................................  Raphanus sativus cv GSK3-1
FY451882       <-- ..................................................  Raphanus sativus cv GSK3-1
EV549644       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446392       <-- ..................................................  Raphanus sativus cv GSK3-1
FD985229       --> -GAAAATGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGGCTTCTC  Raphanus raphanistrum subsp. landra
EV573354       --> -GAAAATGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGGCTTCTC  Raphanus raphanistrum subsp. landra
EY895188       --> -GAAAATGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGGCTTCTC  Raphanus raphanistrum subsp. maritimus
EY919597       --> -GAAAATGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGGCTTCTC  Raphanus raphanistrum subsp. landra
EX751440       --> -GAAAATGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGGCTTCTC  Raphanus raphanistrum subsp. maritimus
FD943773       --> TGAAAAGGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGACTTCTT  Raphanus sativus cv Early Scarlet Globe
EV545933       --> -GAAAATGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGGCTTCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567482       --> TGAAAAGGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGACTTCTT  Raphanus sativus var. oleiformis
FD937526       --> TGAAAAGGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGACTTCTT  Raphanus sativus var. oleiformis
FD555336       --> -GAAAATGTTTTATTTTGATAAATGCAACAATCCCCC-AGATGGCTTCTC  Raphanus raphanistrum subsp. landra

               251    -    301
UN09505        --> TCCCTTTTCAATTGGCTTTTGACTCTATTACCTTCTTGGCGAAAGAAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- TCCTTTCTCAATTGGCTTTGGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus sativus cv Early Scarlet Globe
EV568694       <-- TCCCTTTTCAATTGGCTTTTGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus raphanistrum subsp. landra
FD947912       <-- .........................................AAAGAAGGC  Raphanus sativus cv Early Scarlet Globe
FY443582       <-- ..................................................  Raphanus sativus cv GSK3-1
FY443324       <-- ..................................................  Raphanus sativus cv GSK3-1
FD942016       <-- ..................................................  Raphanus sativus var. oleiformis
FY441408       <-- ..................................................  Raphanus sativus cv GSK3-1
FY451734       <-- ..................................................  Raphanus sativus cv GSK3-1
FY451882       <-- ..................................................  Raphanus sativus cv GSK3-1
EV549644       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446392       <-- ..................................................  Raphanus sativus cv GSK3-1
FD985229       --> TCCCTTTTCAATTGGCTTTTGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus raphanistrum subsp. landra
EV573354       --> TCCCTTTTCAATTGGCTTTTGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus raphanistrum subsp. landra
EY895188       --> TCCCTTTTCAATTGGCTTTTGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus raphanistrum subsp. maritimus
EY919597       --> TCCCTTTTCAATTGGCTTTTGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus raphanistrum subsp. landra
EX751440       --> TCCCTTTTCAATTGGCTTTTGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus raphanistrum subsp. maritimus
FD943773       --> TCCTTTCTCAATTGGCTTTGGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus sativus cv Early Scarlet Globe
EV545933       --> TCCCTTTTCAATTGGCTTTTGACTCTATTACCTTCTTGGCGAAAGGAGGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567482       --> TCCTTTCTCAATTGGCTTTGGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus sativus var. oleiformis
FD937526       --> TCCTTTCTCAATTGGCTTTGGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus sativus var. oleiformis
FD555336       --> TCCCTTTTCAATTGGCTTTTGACTCTATTACCTTCTTGGCGAAAGAAGGC  Raphanus raphanistrum subsp. landra

               301    -    351
UN09505        --> AAACAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- AAGCAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus sativus cv Early Scarlet Globe
EV568694       <-- AAACAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus raphanistrum subsp. landra
FD947912       <-- AAGCAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus sativus cv Early Scarlet Globe
FY443582       <-- ..................................................  Raphanus sativus cv GSK3-1
FY443324       <-- ..................................................  Raphanus sativus cv GSK3-1
FD942016       <-- ..................................................  Raphanus sativus var. oleiformis
FY441408       <-- ..................................................  Raphanus sativus cv GSK3-1
FY451734       <-- ..................................................  Raphanus sativus cv GSK3-1
FY451882       <-- ..................................................  Raphanus sativus cv GSK3-1
EV549644       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446392       <-- ..................................................  Raphanus sativus cv GSK3-1
FD985229       --> AAACAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus raphanistrum subsp. landra
EV573354       --> AAACAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus raphanistrum subsp. landra
EY895188       --> AAACAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus raphanistrum subsp. maritimus
EY919597       --> AAACAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus raphanistrum subsp. landra
EX751440       --> AAACAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus raphanistrum subsp. maritimus
FD943773       --> AAGCAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus sativus cv Early Scarlet Globe
EV545933       --> AAACAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567482       --> AAGCAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus sativus var. oleiformis
FD937526       --> AAGCAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus sativus var. oleiformis
FD555336       --> AAACAGAACGCAGCTGAATGAATCTCAGCGTTGTAAAACTTTAAGGGTCC  Raphanus raphanistrum subsp. landra

               351    -    401
UN09505        --> CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
EV568694       <-- CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
FD947912       <-- CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
FY443582       <-- ..................................................
FY443324       <-- ..................................................
FD942016       <-- ..................................................
FY441408       <-- ..................................................
FY451734       <-- ..................................................
FY451882       <-- ..................................................
EV549644       <-- ..................................................
FY446392       <-- ..................................................
FD985229       --> CTTTGATTTGCTGGAGCTGTCATCAATCGAGTTCACAGGGTTCTTGAAGT
EV573354       --> CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
EY895188       --> CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
EY919597       --> CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
EX751440       --> CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
FD943773       --> CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
EV545933       --> CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
FD567482       --> CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
FD937526       --> CTTTGATTTGCTGGAGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT
FD555336       --> CTTTGATTTGCTGGTGCTGTCATCAATCGGGTTCACAGGGTTCTTGAAGT

               401    -    451
UN09505        --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
EV568694       <-- CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
FD947912       <-- CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
FY443582       <-- .......................CAGAGCATGAATCCGATCACCCCACTC
FY443324       <-- ..................................................
FD942016       <-- ..................................................
FY441408       <-- ..................................................
FY451734       <-- ..................................................
FY451882       <-- ..................................................
EV549644       <-- ..................................................
FY446392       <-- ..................................................
FD985229       --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
EV573354       --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
EY895188       --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
EY919597       --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
EX751440       --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
FD943773       --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
EV545933       --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
FD567482       --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
FD937526       --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC
FD555336       --> CAACGTCAGGCCCTTCAGTTGAACAGAGCATGAATCCGATCACCCCACTC

               451    -    501
UN09505        --> GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
EV568694       <-- GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
FD947912       <-- GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
FY443582       <-- GGGTATGTTGGAACACTGGTCCACGCGTAGTTCACGGAGCCCTTGAAGAT
FY443324       <-- ........................GCGTAGTTCACGGAGCCCTGAAAGAT
FD942016       <-- ..........................GTAGTTCACAGAGCCCTTGAAGAT
FY441408       <-- .................................................T
FY451734       <-- ..................................................
FY451882       <-- ..................................................
EV549644       <-- ..................................................
FY446392       <-- ..................................................
FD985229       --> GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
EV573354       --> GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
EY895188       --> GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
EY919597       --> GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
EX751440       --> GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
FD943773       --> GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
EV545933       --> GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
FD567482       --> GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
FD937526       --> GGGTATGTTGGAACACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT
FD555336       --> GGGTATGTTGGAAAACTGGTCCATGCGTAGTTCACAGAGCCCTTGAAGAT

               501    -    551
UN09505        --> CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
EV568694       <-- CTCACGGCAATTGGAAGCAATGTCTTCGATGATGTCCATGTGAAGCCACA
FD947912       <-- CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
FY443582       <-- CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
FY443324       <-- CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
FD942016       <-- CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
FY441408       <-- CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
FY451734       <-- ..........TTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
FY451882       <-- ..........................CGATGATGTCCATGTGAAGCCACA
EV549644       <-- ..................................................
FY446392       <-- ..................................................
FD985229       --> CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
EV573354       --> CTCACGGCAATTGGAAGCAATGTCTTCGATGATGTCCATGTGAAGCCACA
EY895188       --> CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCACGTGAAGCCACA
EY919597       --> CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
EX751440       --> CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
FD943773       --> CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
EV545933       --> CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
FD567482       --> CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
FD937526       --> CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA
FD555336       --> CTCACGGCAATTGGAAACAATGTCTTCGATGATGTCCATGTGAAGCCACA

               551    -    601
UN09505        --> AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
EV568694       <-- AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
FD947912       <-- AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
FY443582       <-- AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
FY443324       <-- AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
FD942016       <-- AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
FY441408       <-- AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
FY451734       <-- AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
FY451882       <-- AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
EV549644       <-- .............................CCAGGTCGAAGAGCTCTCGCC
FY446392       <-- ................................GGTCGAAGAGCTCTCGCC
FD985229       --> AGCTTTCAGCCTGAGTGCACACAACT........................
EV573354       --> AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
EY895188       --> AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGA.........
EY919597       --> AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
EX751440       --> AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
FD943773       --> AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
EV545933       --> AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
FD567482       --> AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCT......
FD937526       --> AGCTTTCAGCCTGAGTGCACACAACTCCACCAGGTCGAAGAGCTCTCGCC
FD555336       --> AGCTTTCAGCCTGAGTGCACACAAATCCACCAGGTCGAAGAGCTCTCGCC

               601    -    651
UN09505        --> ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ACc...............................................
EV568694       <-- ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
FD947912       <-- ACAGATTGGAAGAAGGGTTTCTCAAACAGCTCCTTTGCAGGACCAATTGG
FY443582       <-- ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
FY443324       <-- ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
FD942016       <-- ACAGATTGGAAGAAGGGTTTCTCAAACAGCTCCTTTGCAGGACCAATTGG
FY441408       <-- ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
FY451734       <-- ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
FY451882       <-- ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
EV549644       <-- ACAGATTGGAAAAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
FY446392       <-- ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
FD985229       --> ..................................................
EV573354       --> ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
EY895188       --> ..................................................
EY919597       --> ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
EX751440       --> ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG
FD943773       --> ACAGATTGGAAGAAGGGTTTCTCAAACAGCTCCTTTGCAGGACCAATTGG
EV545933       --> ACAGATTGGAAGAAGGGTTT-TCAAACAACTCCTTTGCAGGACCAATTGG
FD567482       --> ..................................................
FD937526       --> ACAGATTGGA........................................
FD555336       --> ACAGATTGGAAGAAGGGTTTCTCAAACAACTCCTTTGCAGGACCAATTGG

               651    -    701
UN09505        --> ATCTGATGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV568694       <-- ATCTGACGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus raphanistrum subsp. landra
FD947912       <-- ATCTGAGGAGTCAACAATGACTGCATCATATGATCCTTCAGCAGCATTCT  Raphanus sativus cv Early Scarlet Globe
FY443582       <-- ATCTGATGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus sativus cv GSK3-1
FY443324       <-- ATCTGATGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus sativus cv GSK3-1
FD942016       <-- ATCTGAGGAGTCAACAATGACTGCATCATATGATCCTTCAGCAGCATTCT  Raphanus sativus var. oleiformis
FY441408       <-- ATCTGATGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus sativus cv GSK3-1
FY451734       <-- ATCTGATGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus sativus cv GSK3-1
FY451882       <-- ATCTGATGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus sativus cv GSK3-1
EV549644       <-- ATCTGAGGAGTCAACAATGACTGCATCATATGATCCTTCAGCAGCATTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446392       <-- ATCTGATGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus sativus cv GSK3-1
FD985229       --> ..................................................  Raphanus raphanistrum subsp. landra
EV573354       --> ATCTGACGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus raphanistrum subsp. landra
EY895188       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY919597       --> ATCTGATGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus raphanistrum subsp. landra
EX751440       --> ATCTGATGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus raphanistrum subsp. maritimus
FD943773       --> ATCTGAGGAGTCAACAATGACTGCATCATATGATCCTTCAGCAGCATTCT  Raphanus sativus cv Early Scarlet Globe
EV545933       --> ATCTGACGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567482       --> ..................................................  Raphanus sativus var. oleiformis
FD937526       --> ..................................................  Raphanus sativus var. oleiformis
FD555336       --> ATCTGATGAGTCAACAATAACTGCATCATATGTTCCTTCAGCAGCATTCT  Raphanus raphanistrum subsp. landra

               701    -    751
UN09505        --> TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV568694       <-- TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus raphanistrum subsp. landra
FD947912       <-- TCAAGAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus sativus cv Early Scarlet Globe
FY443582       <-- TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus sativus cv GSK3-1
FY443324       <-- TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus sativus cv GSK3-1
FD942016       <-- TCAAGAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus sativus var. oleiformis
FY441408       <-- TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus sativus cv GSK3-1
FY451734       <-- TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus sativus cv GSK3-1
FY451882       <-- TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus sativus cv GSK3-1
EV549644       <-- TCAAGAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446392       <-- TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus sativus cv GSK3-1
FD985229       --> ..................................................  Raphanus raphanistrum subsp. landra
EV573354       --> TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus raphanistrum subsp. landra
EY895188       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY919597       --> TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus raphanistrum subsp. landra
EX751440       --> TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus raphanistrum subsp. maritimus
FD943773       --> TCAAGAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus sativus cv Early Scarlet Globe
EV545933       --> TCAAAAAAGCAACACCACCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567482       --> ..................................................  Raphanus sativus var. oleiformis
FD937526       --> ..................................................  Raphanus sativus var. oleiformis
FD555336       --> TCAAAAAAGCAACACCATCGCCAATGACGAGGTTAACGCGAGGATCCTCG  Raphanus raphanistrum subsp. landra

               751    -    801
UN09505        --> AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................
EV568694       <-- AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FD947912       <-- AATCCAATTGCTACAGTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FY443582       <-- AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FY443324       <-- AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FD942016       <-- AATCCAATTGCTACAGTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FY441408       <-- AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FY451734       <-- AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FY451882       <-- AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
EV549644       <-- AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FY446392       <-- AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FD985229       --> ..................................................
EV573354       --> AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
EY895188       --> ..................................................
EY919597       --> AATCCAATTGCTACATTAGGGAAAAACTGATTAGAGACATCGACCACCAT
EX751440       --> AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FD943773       --> AATCCAATTGCTACAGTAGGG.............................
EV545933       --> AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> AATCCAATTGCTACATTAGGGAAAAACTGCTTAGAGACATCGACCACCAT

               801    -    851
UN09505        --> TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................
EV568694       <-- TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
FD947912       <-- TTTATCAATCTCACACATATCAATATGCTCAACAGAAGCATGGCGTGCAA
FY443582       <-- TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
FY443324       <-- TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
FD942016       <-- TTTATCAATCTCACACATATCAATATGCTCAACAGAAGCATGGCGTGCAA
FY441408       <-- TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
FY451734       <-- TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
FY451882       <-- TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
EV549644       <-- TTTATCAATCTCACACATATCAATATGCTCAACAGAAGCATGGCGTGCAA
FY446392       <-- TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
FD985229       --> ..................................................
EV573354       --> TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
EY895188       --> ..................................................
EY919597       --> TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
EX751440       --> TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
FD943773       --> ..................................................
EV545933       --> TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> TTTATCAATTTCACACATGTCAATCTGCTCAACAGAAGCATGGCGTGCAA

               851    -    901
UN09505        --> CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV568694       <-- CTTCACGCAAGACACCTCCATCc...........................  Raphanus raphanistrum subsp. landra
FD947912       <-- CCTCCCGCAGGACACCTCCATCTCCTCCc.....................  Raphanus sativus cv Early Scarlet Globe
FY443582       <-- CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTA  Raphanus sativus cv GSK3-1
FY443324       <-- CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTA  Raphanus sativus cv GSK3-1
FD942016       <-- CCTCCCGCAGGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTT  Raphanus sativus var. oleiformis
FY441408       <-- CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTA  Raphanus sativus cv GSK3-1
FY451734       <-- CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTA  Raphanus sativus cv GSK3-1
FY451882       <-- CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTA  Raphanus sativus cv GSK3-1
EV549644       <-- CCTCCCGCGGGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446392       <-- CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTA  Raphanus sativus cv GSK3-1
FD985229       --> ..................................................  Raphanus raphanistrum subsp. landra
EV573354       --> CTTCACGCAAGACACCTCCATCc...........................  Raphanus raphanistrum subsp. landra
EY895188       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY919597       --> CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTT  Raphanus raphanistrum subsp. landra
EX751440       --> CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTT  Raphanus raphanistrum subsp. maritimus
FD943773       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV545933       --> CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567482       --> ..................................................  Raphanus sativus var. oleiformis
FD937526       --> ..................................................  Raphanus sativus var. oleiformis
FD555336       --> CTTCACGCAAGACACCTCCATCTCCTCCTCCAATGACCAACACCTTCTTt  Raphanus raphanistrum subsp. landra

               901    -    951
UN09505        --> GGGTTAGGGATAGAGCACAAAGGAAGATGAGTGATCATCTCCTGATAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV568694       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD947912       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY443582       <-- GGGTTAGGGATAGAGCACAAAGGAAGATGAGTGATCATCTCCTGATAAGC  Raphanus sativus cv GSK3-1
FY443324       <-- GGGTTAGGGATAGAGCACAAAGGAAGATGAGTGATCATCTCCTGATAAGC  Raphanus sativus cv GSK3-1
FD942016       <-- GGGTTAGGGATGGAGCACAAAGGAAGATGAGTGATCATCTCCTGATAAGC  Raphanus sativus var. oleiformis
FY441408       <-- GGGTTAGGGATAGAGCACAAAGGAAGATGAGTGATCATCTCCTGATAAGC  Raphanus sativus cv GSK3-1
FY451734       <-- GGGTTAGGGATAGAGCACAAAGGAAGATGAGTGATCATCTCCTGATAAGC  Raphanus sativus cv GSK3-1
FY451882       <-- GGGTTAGGGATAGAGCACAAAGGAAGATGAGTGATCATCTCCTGATAAGC  Raphanus sativus cv GSK3-1
EV549644       <-- GGGTTAGGGATGGAGCACAAAGGAAGATGAGTGATCATCTCCTGATAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446392       <-- GGGTTAGGGATAGAGCACAAAGGAAGATGAGTGATCATCTCCTGATAAGC  Raphanus sativus cv GSK3-1
FD985229       --> ..................................................  Raphanus raphanistrum subsp. landra
EV573354       --> ..................................................  Raphanus raphanistrum subsp. landra
EY895188       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY919597       --> GGGTTAGGGATGGAGCACAAAGGAAGATGAGTGATC..............  Raphanus raphanistrum subsp. landra
EX751440       --> GGG...............................................  Raphanus raphanistrum subsp. maritimus
FD943773       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV545933       --> GGGTTAGGGATGGAGCACAAAGGAAGATGAGTGATCATCTCCTGATAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567482       --> ..................................................  Raphanus sativus var. oleiformis
FD937526       --> ..................................................  Raphanus sativus var. oleiformis
FD555336       --> gg................................................  Raphanus raphanistrum subsp. landra

               951    -   1001
UN09505        --> GCACTCGTCTCTCTCCGTGAGTTGGATGACTCCATCCAAAACCAACACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................
EV568694       <-- ..................................................
FD947912       <-- ..................................................
FY443582       <-- GCACTCGTCTCTCTCCGTGAGTTGGATGACTCCATCCAAAACCAACACTT
FY443324       <-- GCACTCGTCTCTCTCCGTGAGTTGGATGACTCCATCCAAAACCAACACTT
FD942016       <-- GCACTCGTCTCTCTCCGTGAGTTGGATGACTCCATCCAAAACCAAAACTT
FY441408       <-- GCACTCGTCTCTCTCCGTGAGTTGGATGACTCCATCCAAAACCAACACTT
FY451734       <-- GCACTCGTCTCTCTCCGTGAGTTGGATGACTCCATCCAAAACCAACACTT
FY451882       <-- GCACTCGTCTCTCTCCGTGAGTTGGATGACTCCATCCAAAACCAACACTT
EV549644       <-- GCACTCGTCTCTCTCCGTGAGTTGGATGACTCCATCCAAAACCAAAACTT
FY446392       <-- GCACTCGTCTCTCTCCGTGAGTTGGATGACTCCATCCAAAACCAACACTT
FD985229       --> ..................................................
EV573354       --> ..................................................
EY895188       --> ..................................................
EY919597       --> ..................................................
EX751440       --> ..................................................
FD943773       --> ..................................................
EV545933       --> GCACTCGTCTCTCT....................................
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> ..................................................

               1001   -   1051
UN09505        --> TTCCATATGTCGCAGACTGGAAAACAATGACATCCTGATAATCTGATTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................
EV568694       <-- ..................................................
FD947912       <-- ..................................................
FY443582       <-- TTCCATATGTCGCAGACTGGAAAACAATGACATCCTGATAATCTGATTTC
FY443324       <-- TTCCATATGTCGCAGACTGGAAAACAATGACATCCTGATAATCTGATTTC
FD942016       <-- TTCCATATGTCGCAGACTGGAAAACAATGACATC................
FY441408       <-- TTCCATATGTCGCAGACTGGAAAACAATGACATCCTGATAATCTGATTTC
FY451734       <-- TTCCATATGTCGCAGACTGGAAAACAATGACATCCTGATAATCTGATTTC
FY451882       <-- TTCCATATGTCGCAGACTGGAAAACAATGACATCCTGATAATCTGATTTC
EV549644       <-- TTCCATATGTCGCAGACTGGAAAACAATGACATCCTGATAATCTGATTTC
FY446392       <-- TTCCATATGTCGCAGACTGGAAAACAATGACATCCTGATAATCTGATTTC
FD985229       --> ..................................................
EV573354       --> ..................................................
EY895188       --> ..................................................
EY919597       --> ..................................................
EX751440       --> ..................................................
FD943773       --> ..................................................
EV545933       --> ..................................................
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> ..................................................

               1051   -   1101
UN09505        --> CCTTGAAACAAAACCTTCTCAACCTTCAAAGAGTGTGCCTCTCCTGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................
EV568694       <-- ..................................................
FD947912       <-- ..................................................
FY443582       <-- CCTTGAAACAAAACCTTCTCAACCTTCAAAGAGTGTGCCTCTCCTGGCCA
FY443324       <-- CCTTGAAACAAAACCTTCTCAACCTTCAAAGAGTGTGCCTCTCCTGGCCA
FD942016       <-- ..................................................
FY441408       <-- CCTTGAAACAAAACCTTCTCAACCTTCAAAGAGTGTGCCTCTCCTGGCCA
FY451734       <-- CCTTGAAACAAAACCTTCTCAACCTTCAAAGAGTGTGCCTCTCCTGGCCA
FY451882       <-- CCTTGAAACAAAACCTTCTCAACCTTCAAAGAGTGTGCCTCTCCTGGCCA
EV549644       <-- CCTTGAAACAAAACCTTCTCAACCTTCAAGGAGTGTGCCTCTCCTGGCCA
FY446392       <-- CCTTGAAACAAAACCTTCTCAACCTTCAAAGAGTGTGCCTCTCCTGGCCA
FD985229       --> ..................................................
EV573354       --> ..................................................
EY895188       --> ..................................................
EY919597       --> ..................................................
EX751440       --> ..................................................
FD943773       --> ..................................................
EV545933       --> ..................................................
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> ..................................................

               1101   -   1151
UN09505        --> CATGGGACTCATCTCAGAGAACCATCCAGGAATCACGGAGGAGAAACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................
EV568694       <-- ..................................................
FD947912       <-- ..................................................
FY443582       <-- CATGGGACTCATCTCAGAGAACCATCCAGGAATCACGGAGGAGAAACAAG
FY443324       <-- CATGGGACTCATCTCAGAGAACCATCCAGGAATCACGGAGGAGAAACAAG
FD942016       <-- ..................................................
FY441408       <-- CATGGGACTCATCTCAGAGAACCATCCAGGAATCACGGAGGAGAAACAAG
FY451734       <-- CATGGGACTCATCTCAGAGAACCATCCAGGAATCACGGAGGAGAAACAAG
FY451882       <-- CATGGGACTCATCTCAGAGAACCATCCAGGAATCACGGAGGAGAAACAAG
EV549644       <-- CATGGGACTCATCTCGGAGAACCATCCAGGAATCACGGAGGAGAAATAAG
FY446392       <-- CATGGGACTCATCTCAGAGAACCATCCAGGAATCACGGAGGAGAAACAAG
FD985229       --> ..................................................
EV573354       --> ..................................................
EY895188       --> ..................................................
EY919597       --> ..................................................
EX751440       --> ..................................................
FD943773       --> ..................................................
EV545933       --> ..................................................
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> ..................................................

               1151   -   1201
UN09505        --> CAGGCTCCTTTGTCTGATCTCCGTTCTCTGTCTCCATGGAGGCGGCGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................
EV568694       <-- ..................................................
FD947912       <-- ..................................................
FY443582       <-- CAGGCTCCTTTGTCTGATCTCCGTTCTCTGTCTCCATGGAGGCGGCGGCG
FY443324       <-- CAGGCTCCTTTGTCTGATCTCCGTTCTCTGTCTCCATGGAGGCGGCGGCG
FD942016       <-- ..................................................
FY441408       <-- CAGGCTCCTTTGTCTGATCTCCGTTCTCTGTCTCCATGGAGGCGGCGGCG
FY451734       <-- CAGGCTCCTTTGTCTGATCTCCGTTCTCTGTCTCCATGGAGGCGGCGGCG
FY451882       <-- CAGGCTCCTTTGTCTGATCTCCGTTCTCTGTCTCCATGGAGGCGGCGGCG
EV549644       <-- CAGGCTCCTTTGTCTGATCTCCGTTCTCTGTCTCCATGGAGGCGGCGGCG
FY446392       <-- CAGGCTCCTTTGTCTGATCTCCGTTCTCTGTCTCCATGGAGGCGGCGGCG
FD985229       --> ..................................................
EV573354       --> ..................................................
EY895188       --> ..................................................
EY919597       --> ..................................................
EX751440       --> ..................................................
FD943773       --> ..................................................
EV545933       --> ..................................................
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> ..................................................

               1201   -   1251
UN09505        --> TTATCCTCCTCTTCTCTCGGGCGCTTCAGATCGGTGGCGGAGGCTTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................
EV568694       <-- ..................................................
FD947912       <-- ..................................................
FY443582       <-- TTATCCTCCTCTTCTCTCGGGCGCTTCAGATCGGTGGCGGAGGCTTCTTT
FY443324       <-- TTATCCTCCTCTTCTCTCGGGCGCTTCAGATCGGTGGCGGAGGCTTCTTT
FD942016       <-- ..................................................
FY441408       <-- TTATCCTCCTCTTCTCTCGGGCGCTTCAGATCGGTGGCGGAGGCTTCTTT
FY451734       <-- TTATCCTCCTCTTCTCTCGGGCGCTTCAGATCGGTGGCGGAGGCTTCTTT
FY451882       <-- TTATCCTCCTCTTCTCTCGGGCGCTTCAGATCGGTGGCGGAGGCTTCTTT
EV549644       <-- TTATCCTCCTCTTCTCTCGGGCGCTTCAGATCGGTGGCGGAGGCTTCTTT
FY446392       <-- TTATCCTCCTCTTCTCTCGGGCGCTTCAGATCGGTGGCGGAGGCTTCTTT
FD985229       --> ..................................................
EV573354       --> ..................................................
EY895188       --> ..................................................
EY919597       --> ..................................................
EX751440       --> ..................................................
FD943773       --> ..................................................
EV545933       --> ..................................................
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> ..................................................

               1251   -   1301
UN09505        --> GGCATCCATCGCTGCTCTGTTCGGCGAAGAAGAAGAGGAGGAGATACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- ..................................................
EV568694       <-- ..................................................
FD947912       <-- ..................................................
FY443582       <-- GGCATCCATCGCTGCTCT-TTCGGCGAAGAAGAAGAGGAGGAG.......
FY443324       <-- GGCATCCATCGCTGCTCTGTTCGGCGAAGAAGAAGAGGAGGAG.......
FD942016       <-- ..................................................
FY441408       <-- GGCATCCATCGCTGCTCTGTTCGGCGAAGAAGAAGAGGAGGAGATACGAG
FY451734       <-- GGCATCCATCGCTGCTCTGTTCGGCGAAGAAGAAGAGGAGGAGATACGAG
FY451882       <-- GGCATCCATCGCTGCTCTGTTCGGCGAAGAAGAAGAGGAGGAGATACGAG
EV549644       <-- GGCATCCATCGCTGCTCTGCTCGGCGAAGAAGAAGAGGAGGAGATACGAG
FY446392       <-- GGCATCCATCGCTGCTCTGTTCGGCGAAGAAGAAGAGGAGGAGATACGAG
FD985229       --> ..................................................
EV573354       --> ..................................................
EY895188       --> ..................................................
EY919597       --> ..................................................
EX751440       --> ..................................................
FD943773       --> ..................................................
EV545933       --> ..................................................
FD567482       --> ..................................................
FD937526       --> ..................................................
FD555336       --> ..................................................

               1301   -   1351
UN09505        --> AGAGGGTGAAATGAGAGAGAGGGATTAGGGTTTTGCAGGGGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941407       <-- .............................................
EV568694       <-- .............................................
FD947912       <-- .............................................
FY443582       <-- .............................................
FY443324       <-- .............................................
FD942016       <-- .............................................
FY441408       <-- AGAGGGTGAA...................................
FY451734       <-- AGAGGGTGAAATGAGAGAG..........................
FY451882       <-- AGAGGGTGAAATGAGAGAGAGGGATTAGGGTTTTGCAGGGGAGTT
EV549644       <-- AGAGGGTGAAATGAGAGAGAGGGATTAGGGTTTTtgcgggggcc.
FY446392       <-- AGAGGGTGAAATGAGAGcctcgtgccg..................
FD985229       --> .............................................
EV573354       --> .............................................
EY895188       --> .............................................
EY919597       --> .............................................
EX751440       --> .............................................
FD943773       --> .............................................
EV545933       --> .............................................
FD567482       --> .............................................
FD937526       --> .............................................
FD555336       --> .............................................