RadishBase

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Alignment for radish unigene UN09534

               1      -     51
UN09534        --> GGCCTTTTGACTCAGCCGTCCGTTTCACATCATTTGGAGTTGCAGCACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- ..................................................
EV540518       <-- ..................................................
FD537537       <-- ..................................................
EX776559       <-- ..................................................
FD961374       <-- ..................................................
EX752563       <-- ..................................................
FD554036       <-- ..................................................
EV531143       <-- ..................................................
FD960942       <-- ..................................................
EY911401       <-- ..................................................
EV535969       --> GGCCTTTTGACTCAGCCGTCCGTTTCACATCATTTGGAGTTGCAGCACAG
FD544066       --> GGCCTTTTGACTCAGCCGTCCGTTTCACATCATTTGGAGTTGCAGCACAG
EV526734       --> ......ggGACTCAGCCGTCCGTTTCACATCATTTGGAGTTGCAGCACAG
FD533783       --> .....gggGACTCAGCCGTCCGTTTCACATCATTTGGAGTTGCAGCACAG
FD541201       --> ...........ggAGCCGTCCGTTTCACATCATTTGGAGTTGCAGCACAG
EX748700       --> ..................................................
EV534873       --> ..................................................
EV526008       --> ..................................................
FD965116       --> ..................................................
FD965702       --> ..................................................

               51     -    101
UN09534        --> GAGGACGACAATGGCCCCGAAGAAAGGAGTGAAGCTAGCTGCCAAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- ..................................................
EV540518       <-- ..................................................
FD537537       <-- ..................................................
EX776559       <-- ..................................................
FD961374       <-- ..................................................
EX752563       <-- ..................................................
FD554036       <-- ..................................................
EV531143       <-- ..................................................
FD960942       <-- ..................................................
EY911401       <-- ..................................................
EV535969       --> GGGGACGACAATGGCCCCGAAGAAAGGAGTGAAGCTAGCTGCCAAGAAGA
FD544066       --> GAGGACGACAATGGCCCCGAAGAAAGGAGTGAAGCTAGCTGCCAAGAAGA
EV526734       --> GAGGACGACAATGGCCCCGAAGAAAGGAGTGAAGTTAGCTGCCAAGAAGA
FD533783       --> GAGGACGACAATGGCCCCGAAGAAAGGAGTGAAGGTAGCTGCCAAGAAGA
FD541201       --> GAGGACGACAATGGCCCCGAAGAAAGGAGTGAAGCTAGCTGCCAAGAAGA
EX748700       --> ......................AAAGGAGTGAAGTTAGCTGCCAAGAAGA
EV534873       --> ..................................................
EV526008       --> ..................................................
FD965116       --> ..................................................
FD965702       --> ..................................................

               101    -    151
UN09534        --> AGACGGAGAAAGTAACCAACCCTCTATTTGAGAGGAGGCCTAAGCAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- .............................GAGAGGAGGCCTAAGCAGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540518       <-- ...........................................GCAGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537537       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776559       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD961374       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX752563       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD554036       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV531143       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD960942       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY911401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535969       --> AGACGGAGAAAGTAACCAACCCTCTATTTGAGAGGAGGCCTAAGCAGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544066       --> AGACGGAGAAAGTAACCAACCCTCTATTTGAGAGGAGGCCTAAGCAGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526734       --> AGACGGAGAAAGTAACGAACCCTCTGTTCGAGAGGAGGCCTAAGCAATTC  Raphanus raphanistrum subsp. maritimus
FD533783       --> AGACGGAGAAAGTAACGAACCCTCTGTTCGAGAGGAGGCCTAAGCAGTTC  Raphanus raphanistrum subsp. maritimus
FD541201       --> AGACGGAGAAAGTAACCAACCCTCTATTTGAGAGGAGGCCTAAGCAGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748700       --> AGACGG-GAAAGTAACGAACCCTCTGTTCGAGAGGAGGCCTAAGCAATTC  Raphanus raphanistrum subsp. maritimus
EV534873       --> .....GAGAAAGTAACCAACCCTCTATTTGAGAGGAGGCCTAAGCAGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526008       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965116       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965702       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN09534        --> GGTATCGGAGGAGCTCTTCCTCCAAAGAAGGATCTGACTCGCTACATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- GGTATCGGAGGAGCTCTTCCTCCAAAGAAGGATCTGACTCGCTACATCAA
EV540518       <-- GGTATCGGAGGAGCTCTTCCTCCAAAGAAGGATCTGACTCGCTACATCAA
FD537537       <-- ....................................ACTCGCTACATCAA
EX776559       <-- ..................................................
FD961374       <-- ..................................................
EX752563       <-- ..................................................
FD554036       <-- ..................................................
EV531143       <-- ..................................................
FD960942       <-- ..................................................
EY911401       <-- ..................................................
EV535969       --> GGTATCGGAGGAGCTCTTCCTCCAAAGAAGGATCTGACTCGCTACATCAA
FD544066       --> GGTATCGGAGGAGCTCTTCCTCCAAAGAAGGATCTGACTCGCTACATCAA
EV526734       --> GGTATCGGAGGAGCTCTTCCTCCAAAGAAGGATCTGACTCGCTACATCAA
FD533783       --> GGTATCGGAGGAGTTCTTCCTCCAAAGAAGGATCCGACTCGCTACATCAA
FD541201       --> GGTATCGGAGGAGCTCTTCCTCCAAAGAAGGATCTGACTCGCTACATCAA
EX748700       --> GGTATCGGAGGAGCTCTTCCTCCAAAGAAGGATCCGACTCGCTACATCAA
EV534873       --> GGTATCGGAGGAGCTCTTCCTCCAAAGAAGGATCTGACTCGCTACATCAA
EV526008       --> ...............CTTCCTCCAAAGAAGGATCTGACTCGCTACATCAA
FD965116       --> ..................................................
FD965702       --> ..................................................

               201    -    251
UN09534        --> ATGGCCCAAGTCAATCCGTCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- ATGGCCCAAGTCAATCCGTCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540518       <-- ATGGCCCAAGTCAATCCGTCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537537       <-- ATGGCCCAAGTCAATCCGTCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776559       <-- ..............................................CAGA  Raphanus raphanistrum subsp. landra
FD961374       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX752563       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD554036       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV531143       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD960942       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY911401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535969       --> ATGGCCCAAGTCAATCCGTCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544066       --> ATGGCCCAAGTCAATCCGTCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526734       --> ATGGCCCAAGTCAATCCGCCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA  Raphanus raphanistrum subsp. maritimus
FD533783       --> ATGGCCCAAGTCAATCCGCCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA  Raphanus raphanistrum subsp. maritimus
FD541201       --> ATGGCCCAAGTCAATCCGTCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748700       --> ATGGCCCAAGTCAATCCGCCTCCAAAGGCAGAAGCGTATCCTTAAGCGGA  Raphanus raphanistrum subsp. maritimus
EV534873       --> ATGGCCCAAGTCAATCCGTCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526008       --> ATGGCCCAAGTCAATCCGCCTCCAAAGGCAGAAGCGTATCCTTAAGCAGA  Raphanus raphanistrum subsp. maritimus
FD965116       --> ....................................gATCCTTAAGCAGA  Raphanus raphanistrum subsp. maritimus
FD965702       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               251    -    301
UN09534        --> GGCTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- GACTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
EV540518       <-- GGCTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
FD537537       <-- GGCTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
EX776559       <-- GGCTCAAGGTCCCCCCGGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
FD961374       <-- ..................................................
EX752563       <-- ..................................................
FD554036       <-- ..................................................
EV531143       <-- ..................................................
FD960942       <-- ..................................................
EY911401       <-- ..................................................
EV535969       --> GGCTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
FD544066       --> GGCTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
EV526734       --> GGCTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
FD533783       --> GGCTCAAGGTCCCCCCGGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
FD541201       --> GGCTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
EX748700       --> GGCTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCGAGACTCTTGACAAG
EV534873       --> GACTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
EV526008       --> GGCTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
FD965116       --> GGCTCAAGGTCCCTCCTGCTTTGAACCAGTTCACCAAGACTCTTGACAAG
FD965702       --> ..................................................

               301    -    351
UN09534        --> AACCTTGCCACCCAGCTTTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- AACCTTGCCACCCAGCTTTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
EV540518       <-- AACCTTGCCACCCAGCTTTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
FD537537       <-- AACCTTGCCACCCAGCTTTTCGAGGTTCTTATGAAGTACAGACCAGAGGA
EX776559       <-- AACCTTGCCACCCAGCTCTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
FD961374       <-- .......CCACCCAGCTCTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
EX752563       <-- ..............................ATGAAGTACAGACCAGAGGA
FD554036       <-- ..................................................
EV531143       <-- ..................................................
FD960942       <-- ..................................................
EY911401       <-- ..................................................
EV535969       --> AACCTTGCCACCCAGCTTTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
FD544066       --> AACCTTGCCACCCAGCTTTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
EV526734       --> AACCTTGCCACCCAGCTCTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
FD533783       --> AACCTTGCCACCCAGCTTTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
FD541201       --> AACCTTGCCACCCAGCTTTTCGAGGTTCTTATGAAGTACAGACCAGAGGA
EX748700       --> AACCTTGCCACCCAGCTCTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
EV534873       --> AACCTTGCCACCCAGCTTTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
EV526008       --> AACCTTGCCACCCAGCTCTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
FD965116       --> AACCTTGCCACCCAGCTCTTCAAGGTTCTTATGAAGTACAGACCAGAGGA
FD965702       --> ..................................................

               351    -    401
UN09534        --> CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
EV540518       <-- CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
FD537537       <-- CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
EX776559       <-- CAAGGCCACCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
FD961374       <-- CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
EX752563       <-- CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
FD554036       <-- ..................TCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
EV531143       <-- .......................TTCTCAAAAAGGCTCAAGCCGAGGCTG
FD960942       <-- .........................CTCAAAAAGGCTCAAGCCGAGGCTG
EY911401       <-- ..................................................
EV535969       --> CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
FD544066       --> CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
EV526734       --> CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
FD533783       --> CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGTTG
FD541201       --> CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
EX748700       --> CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
EV534873       --> CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
EV526008       --> CAAGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
FD965116       --> CAGGGCCGCCAAGAAGGATCGTCTTCTCAAAAAGGCTCAAGCCGAGGCTG
FD965702       --> ..................................................

               401    -    451
UN09534        --> AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- AGGGAAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540518       <-- AGGGAAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537537       <-- AGGGAAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776559       <-- AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. landra
FD961374       <-- AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. maritimus
EX752563       <-- AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. maritimus
FD554036       <-- AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. landra
EV531143       <-- AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. maritimus
FD960942       <-- AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. maritimus
EY911401       <-- .............TGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535969       --> AGGGAAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544066       --> AGGGAAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526734       --> AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. maritimus
FD533783       --> AGGGAAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. maritimus
FD541201       --> AGGGAAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748700       --> AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. maritimus
EV534873       --> AGGGAAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526008       --> AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. maritimus
FD965116       --> AGGGTAAGCCTTCTGAATCCAAGAAGCCCATT-GTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. maritimus
FD965702       --> ......AGCCTTCTGAATCCAAGAAGCCCATTTGTCGTCAAGTACGGTCT  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN09534        --> CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
EV540518       <-- CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
FD537537       <-- CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
EX776559       <-- CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
FD961374       <-- CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
EX752563       <-- CAACCACGTCACCTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
FD554036       <-- CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
EV531143       <-- CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
FD960942       <-- CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
EY911401       <-- CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
EV535969       --> CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
FD544066       --> CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
EV526734       --> CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
FD533783       --> CAACCACGTCACTTACCTCATCTAGCAGAACAAGGCCCAGCTTGTCGTCA
FD541201       --> CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
EX748700       --> CAACCACGTCACCTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
EV534873       --> CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
EV526008       --> CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
FD965116       --> CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA
FD965702       --> CAACCACGTCACTTACCTCATCGAGCAGAACAAGGCCCAGCTTGTCGTCA

               501    -    551
UN09534        --> TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- TTGCACACGATGTTGATCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540518       <-- TTGCACACGATGTTGATCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537537       <-- TTGCACACGATGTTGATCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776559       <-- TTGCCCACGATGTTTACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. landra
FD961374       <-- TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTACTCTT  Raphanus raphanistrum subsp. maritimus
EX752563       <-- TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. maritimus
FD554036       <-- TTGCCCACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. landra
EV531143       <-- TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. maritimus
FD960942       <-- TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. maritimus
EY911401       <-- TTGCCCACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535969       --> TTGCACACGATGTTGATCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544066       --> TTGCACACGATGTTGATCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526734       --> TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. maritimus
FD533783       --> TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. maritimus
FD541201       --> TTGCACACGATGTTGATCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748700       --> TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. maritimus
EV534873       --> TTGCACACGATGTTGATCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526008       --> TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. maritimus
FD965116       --> TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTGCTCTT  Raphanus raphanistrum subsp. maritimus
FD965702       --> TTGCACACGATGTTGACCCCATCGAGTTGGTCGTCTGGTTGCCTACTCTT  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN09534        --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
EV540518       <-- TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
FD537537       <-- TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
EX776559       <-- TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
FD961374       <-- TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
EX752563       <-- TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATTTCGTCT
FD554036       <-- TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
EV531143       <-- TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
FD960942       <-- TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
EY911401       <-- TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
EV535969       --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
FD544066       --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
EV526734       --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
FD533783       --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
FD541201       --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
EX748700       --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
EV534873       --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
EV526008       --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
FD965116       --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT
FD965702       --> TGCAGAAAGATGGAAGTGCCTTACTGCATTGTTAAAGGCAAATCTCGTCT

               601    -    651
UN09534        --> TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
EV540518       <-- TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
FD537537       <-- TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
EX776559       <-- TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
FD961374       <-- TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
EX752563       <-- TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
FD554036       <-- TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
EV531143       <-- TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTCGTGTTTGACAACTG
FD960942       <-- TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
EY911401       <-- TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
EV535969       --> TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
FD544066       --> TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
EV526734       --> TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTCGTGTTTGACAACTG
FD533783       --> TGGAACGGTGGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
FD541201       --> TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
EX748700       --> TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
EV534873       --> TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
EV526008       --> TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
FD965116       --> TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG
FD965702       --> TGGAACGGTCGTTCACCAGAAGACTGCTGCTTGCTTGTGTTTGACAACTG

               651    -    701
UN09534        --> TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
EV540518       <-- TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
FD537537       <-- TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
EX776559       <-- TCAAGAACGAGGACAAGCTAGAGTTCAGCAATATCCTTGAAGCCATCAA-
FD961374       <-- TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
EX752563       <-- TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
FD554036       <-- TCAAGAACGAGGACAGGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
EV531143       <-- TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
FD960942       <-- TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
EY911401       <-- TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
EV535969       --> TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
FD544066       --> TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
EV526734       --> TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAAA
FD533783       --> TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAGGCCATCAA-
FD541201       --> TCAAGAA...........................................
EX748700       --> TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
EV534873       --> TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
EV526008       --> TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
FD965116       --> TCAAGAACGAGGACAAGCTAGAGTTCAGCAAGATCCTTGAAGCCATCAA-
FD965702       --> TCAA..............................................

               701    -    751
UN09534        --> GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGA............
EV540518       <-- GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
FD537537       <-- GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
EX776559       <-- GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
FD961374       <-- GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
EX752563       <-- GGCAGACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
FD554036       <-- GGCAACCTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
EV531143       <-- GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
FD960942       <-- GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
EY911401       <-- GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
EV535969       --> GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
FD544066       --> GGCAAACTTCAACGACA-GTACGAGGAGTA....................
EV526734       --> GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
FD533783       --> GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAG.............
FD541201       --> ..................................................
EX748700       --> GGCAGACTTCAACGACA-GTACGAGGAGT.....................
EV534873       --> GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
EV526008       --> GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
FD965116       --> GGCAAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAG
FD965702       --> ..................................................

               751    -    801
UN09534        --> GCATCATGGGATCCAAATCTCAGGCCAAGACAAAGGCCAAGGAAAGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540518       <-- GTATCATGGGATCCAAATCTCAGGCCAAGACAAAGGCCAAGGAAAGAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537537       <-- GTATCATGGGATCCAAATCTCAGGCCAAGACAAAGGCCAAGGAAAGGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776559       <-- GCATCATGGGATCCAAATCTCAGGCCAAGACAAAGGCCAAGGAAAGGGTT  Raphanus raphanistrum subsp. landra
FD961374       <-- GCATCATGGGATCCAAATCTCAGGCCAAGACAAAGGCCAAGGAAAGGGTT  Raphanus raphanistrum subsp. maritimus
EX752563       <-- GCATCATGGGATCCAAATCTCAGGCCAAGACAAAGGCCAAGGAAAGGGTT  Raphanus raphanistrum subsp. maritimus
FD554036       <-- GCATCATGGGATCCAAATCTCAGGCCAAGACAAAGGCCAAGGAAAGGGTT  Raphanus raphanistrum subsp. landra
EV531143       <-- GCATCATGGGATCCAAATCTCAGGCCAAGACAAAGGCCAAGGAAAGGGTT  Raphanus raphanistrum subsp. maritimus
FD960942       <-- GCATCATGGGATCCAAATCTCAGGCCAAGA-AAAGGCCAAGGAAAGGGTT  Raphanus raphanistrum subsp. maritimus
EY911401       <-- GCATCATGGGATCCAAATCTCAGGCCAAGACAAAGGCCAAGGAAAGGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535969       --> GTATCATGGGATCCAAATCTCAGGCCAAGACAA.................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544066       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526734       --> GCATCATGGGATCCAAATCTCAG-CCAAGAC...................  Raphanus raphanistrum subsp. maritimus
FD533783       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD541201       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748700       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV534873       --> GTATCATGGGATCCAAATCT..............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526008       --> GCATCATGGGATCCAAATCTCAGGCCAAGACAAAGGCCAAGGAAAGGGTT  Raphanus raphanistrum subsp. maritimus
FD965116       --> GCATCATGGGATCCAAATC...............................  Raphanus raphanistrum subsp. maritimus
FD965702       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN09534        --> CTTGCAAAAGAGGCTGCCCAAAGGATGAACTAAGAAGCATATCTTTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- ..................................................
EV540518       <-- CTTGCAAAAGAGGCTGCCCAAAGAATGAACTAAGATGCATATCTTTTCTT
FD537537       <-- CTTGCAAAAGAGGCTGCCCAAAGAATGAACTAAGATGCATATCTTTTCTT
EX776559       <-- CTTGCAAAAGAGGCTGCCCAAAGGATGAACTAAGAAGCATATCTTTTCTT
FD961374       <-- CTTGCAAAAGAGGCTGCCCAAAGGATGAACTAAGAAGCATATCTTTTCTT
EX752563       <-- CTTACAAAAGAGGCTGCCCAAAGGATGAACTAAGAAGCATATCTTTTCTT
FD554036       <-- CTTGCAAAAGAGGCTGCCCAAAGGATGAACTAAGAAGCATATCTTTTCTT
EV531143       <-- CTTGCAAAAGAGGCTGCCCAAAGGATGAACTAAGAAGCATATCTTTTCTT
FD960942       <-- CTTGCAAAAGAGGCTGCCCAAAGGATGAACTAAGAAGCATATCTTTTCTT
EY911401       <-- CTTGCAAAAGAGGCTGCCCAAAGGATGAACTAAGAAGCATATCTTTTCTT
EV535969       --> ..................................................
FD544066       --> ..................................................
EV526734       --> ..................................................
FD533783       --> ..................................................
FD541201       --> ..................................................
EX748700       --> ..................................................
EV534873       --> ..................................................
EV526008       --> CTTGCAAAAGAGGCTGCCCAAAGGATGAACTAAGAAGCATATCTTTTCTT
FD965116       --> ..................................................
FD965702       --> ..................................................

               851    -    901
UN09534        --> ATTGTCTGTCATTTGCTGAGATT-GTCGTAAAACTTGATAGACCT---TC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- ..................................................
EV540518       <-- ATTGTCTGTTATTTGCTGAGATTTGTCGTAAAACTTGATAGACCT-CTTT
FD537537       <-- ATTGTCTGTTATTTGCTGAGATTTGTCGTAAAACTTGATAGACCTCTTTT
EX776559       <-- ATTGTCTGTCATTTGCTGAGATT-GTCGTAAAACTTGATAGACCT---TC
FD961374       <-- ATTGTCTGTCATTTGCTGAGATT-GTCGTAAAACTTGATAGACCT---TC
EX752563       <-- ATCGTCTGTCATTTGCTGAGATT-GTCGTAAAACTTGATAGACCT---TC
FD554036       <-- ATTGTCTGTCATTTGCTGAGATT-GTCGTAAAACTTGATAGACCT---TC
EV531143       <-- ATTGTCTGTCATTTGCTGAGATT-GTCGTAAAACTTGATAGACCT---TC
FD960942       <-- ATTGTCTGTCATTTGCTGAGATT-GTCGTAAAACTTGATAGACCT---TC
EY911401       <-- ATTGTCTGTCATTTGCTGAGATT-GTCGTAAAACTTGATAGACCT---TC
EV535969       --> ..................................................
FD544066       --> ..................................................
EV526734       --> ..................................................
FD533783       --> ..................................................
FD541201       --> ..................................................
EX748700       --> ..................................................
EV534873       --> ..................................................
EV526008       --> ATTGTCTGTCATTTGCTGAGATT-GTCGTAAAACTTGATAGACCT---TC
FD965116       --> ..................................................
FD965702       --> ..................................................

               901    -    951
UN09534        --> TTTTGTTTAGCTGTTGGCATTCTTG-TTTTCTTTTTTAATGGATGTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- ..................................................
EV540518       <-- TTTTGTTTAGCTGTTGGAACTCTTG-GTTTTTTTTTTA-TGAATGTTTTG
FD537537       <-- TTTTGTTTAGCTGTTGGAACTCTTGGTTTTTTTTTTTTATGAATGTTTTG
EX776559       <-- TTTTGTTTAGCTGTTGGCATTCTTG-TTTTCTTTTTTAATGGATGTTTTG
FD961374       <-- TTTTGTTTAGCTGTTGGCATTCTTG-TTTTCTTTTTTAATGGATGTTTTG
EX752563       <-- TTTTGTTTAGCTGTTGGCATCCTTG-TTTTCTTTTTTAATGGATGTTTTG
FD554036       <-- TTTTGTTTAGCTGTTGGCATTCTTG-TTTTCTTTTTTAATGGATGTTTTG
EV531143       <-- TTTTGTTTAGCTGTTGGCATTCTTG-TTTTCTTTTTTAATGGATGTTTTG
FD960942       <-- TTTTGTTTAGCTGTTGGCATTCTTG-TTTTCTTTTTTAATGGATGTTTTG
EY911401       <-- TTTTGTTTAGCTGTTGGCATTCTTG-TTTTCTTTTTTAATGGATGTTTTG
EV535969       --> ..................................................
FD544066       --> ..................................................
EV526734       --> ..................................................
FD533783       --> ..................................................
FD541201       --> ..................................................
EX748700       --> ..................................................
EV534873       --> ..................................................
EV526008       --> TTTTGTTTAGCTGTTGGCATTCTTG-TTTTCTTTTTTAATGGATGTTTTG
FD965116       --> ..................................................
FD965702       --> ..................................................

               951    -   1001
UN09534        --> AGCACTTTCTTCCATCTTCTTGAAGCTTAATCATCTTTCAGCCCATTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- ..................................................
EV540518       <-- AGCACTTTCTTC......................................
FD537537       <-- AGCACTTTCTTCag....................................
EX776559       <-- AGCACTTTCTTCCATCTTCTTGAAGCTTAATCATCTTTCAGCCC......
FD961374       <-- AGCACTTTCTTCCATCTTCTTGAAGCTTAATCATCTTTCAGCCCATTTTA
EX752563       <-- AGCACTTTCTTCCATCTTCTTGAAGCTTAATCATCTTTCAGCCCt.....
FD554036       <-- AGCACTTTCTTCCATCTTCTTGAAGCTTAATCATCTTTCAGCCC......
EV531143       <-- AGCACTTTCTTCCATCTTCTTGAAGCTTAATCGTCTTTCAGCCC......
FD960942       <-- AGCACTTTCTTCCATCTTCTTGAAGCTTAATCATCTTTCAGCCC......
EY911401       <-- AGCACTTTCTTCCATCTTCTTGAAGCTTAATCATCTTTCAGCCCATTTTA
EV535969       --> ..................................................
FD544066       --> ..................................................
EV526734       --> ..................................................
FD533783       --> ..................................................
FD541201       --> ..................................................
EX748700       --> ..................................................
EV534873       --> ..................................................
EV526008       --> AGCACTTTCTTCCATCTTC...............................
FD965116       --> ..................................................
FD965702       --> ..................................................

               1001   -   1051
UN09534        --> AATTTGTTTGTTGTGTTTTGACAAAGAGCTAAACAGTTTTGGCCTTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- ..................................................
EV540518       <-- ..................................................
FD537537       <-- ..................................................
EX776559       <-- ..................................................
FD961374       <-- AAcc..............................................
EX752563       <-- ..................................................
FD554036       <-- ..................................................
EV531143       <-- ..................................................
FD960942       <-- ..................................................
EY911401       <-- AATTTGTTTGTTGTGTTTTGACAAAGAGCTAAACAGTTTTGGCCTTGTTC
EV535969       --> ..................................................
FD544066       --> ..................................................
EV526734       --> ..................................................
FD533783       --> ..................................................
FD541201       --> ..................................................
EX748700       --> ..................................................
EV534873       --> ..................................................
EV526008       --> ..................................................
FD965116       --> ..................................................
FD965702       --> ..................................................

               1051   -   1101
UN09534        --> TTGTAATTTTAGTCTTCTAAAAATTTACCCAAGTTAATGAAAGCTTATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539680       <-- ..................................................
EV540518       <-- ..................................................
FD537537       <-- ..................................................
EX776559       <-- ..................................................
FD961374       <-- ..................................................
EX752563       <-- ..................................................
FD554036       <-- ..................................................
EV531143       <-- ..................................................
FD960942       <-- ..................................................
EY911401       <-- TTGTAATTTTAGTCTTCTAAAAATTTACCCAAGTTAATGAAAGCTTATAA
EV535969       --> ..................................................
FD544066       --> ..................................................
EV526734       --> ..................................................
FD533783       --> ..................................................
FD541201       --> ..................................................
EX748700       --> ..................................................
EV534873       --> ..................................................
EV526008       --> ..................................................
FD965116       --> ..................................................
FD965702       --> ..................................................

               1101   -   1151
UN09534        --> GTGAGATC
                   ~~~~~~~~
EV539680       <-- ........
EV540518       <-- ........
FD537537       <-- ........
EX776559       <-- ........
FD961374       <-- ........
EX752563       <-- ........
FD554036       <-- ........
EV531143       <-- ........
FD960942       <-- ........
EY911401       <-- GTGAGATC
EV535969       --> ........
FD544066       --> ........
EV526734       --> ........
FD533783       --> ........
FD541201       --> ........
EX748700       --> ........
EV534873       --> ........
EV526008       --> ........
FD965116       --> ........
FD965702       --> ........