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Alignment for radish unigene UN09538

               1      -     51
UN09538        --> AAGTGTTGAAAGTGATTCTCTTCATTATTTGTACTCTTTGTTTT--CGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................
EY921939       <-- ..................................................
EV552221       <-- ..................................................
EV566733       <-- ..................................................
EV569140       <-- ..................................................
FD978280       <-- ..................................................
EV572469       --> AAGTGTTGAAAGTGATTCTCTTCATTATTTGTACTCTTTGTTTT--CGTC
EY917995       --> AAGTGTTGAAAGTGATTCTCTTCATTATTTGTACTCTTTGTTTT--CGTC
FD565918       --> AAGTGTTGAAAGTGATTCTCTTCATTATTTGTACTCTTTGTTTT--CGTC
EV571930       --> cgtTGTTGAAAGTGATTCTCTTCATTATTTGTACTCTTTGTTTT--CGTC
EV573734       --> ....GTTGAAAGTGATTCTCTTCATTATTTGTACTCTTTGTTTT--CGTC
FD552697       --> .......GAAAGTGATTCTCTTCATTATTTGTACTCTTTGTTTT--CGTC
FD936867       --> .......GAAAGTGATTCTCTTCATTATTTGTACTCTTTGTTTT--CGTC
FD974555       --> .......gcAAGTGATTCTCTTCATTATTTGTACTCTTTGTTTTTTCGTC

               51     -    101
UN09538        --> TAGTTTCTTGTAACACGAGCTATAGAGTTGTTAATTGTTTTATTCATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................
EY921939       <-- ..................................................
EV552221       <-- ..................................................
EV566733       <-- ..................................................
EV569140       <-- ..................................................
FD978280       <-- ..................................................
EV572469       --> TAGTTTCTTGTAACACGAGCTATAGAGTTGTTAATTGTTTTATTCATAAA
EY917995       --> TAGTTTCTTGTAACACGAGCTATAGAGTTGTTAATTGTTTTATTCATAAA
FD565918       --> TAGTTTCTTGTAACACGAGCTATAGAGTTGTTAATTGTTTTATTCATAAA
EV571930       --> TAGTTTCTTGTAACACGAGCTATAGAGTTGTTAATTGTTTTATTCATAAA
EV573734       --> TAGTTTCTTGTAACACGAGCTATAGAGTTGTTAATTGTTTTATTCATAAA
FD552697       --> TAGTTTCTTGTAACACGAGCTATAGAGTTGTTAATTGTTTTATTCATAAA
FD936867       --> TAGTTTCTTGTAACACGAGCTATAGAGTTGTTAATTGTTTTATTCATAAA
FD974555       --> TAGTTTCTTGTAACACGAGCTA--GAGTTGTTAAATGTTTTATTCATAAA

               101    -    151
UN09538        --> AGCCGACAAGCAAAACAAGTGAAAACCATACAATGTCCTGATTCAAGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................  Raphanus sativus var. oleiformis
EY921939       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV552221       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566733       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV569140       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD978280       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572469       --> AGCCGACAAGCAAAACAAGTGAAAACCATACAATGTCCTGATTCAAGTCT  Raphanus raphanistrum subsp. landra
EY917995       --> AGCCGACAAGCAAAACAAGTGAAAACCATACAATGTCCTGATTCAAGTCT  Raphanus raphanistrum subsp. landra
FD565918       --> AGCCGACAAGCAAAACAAGTGAAAACCATACGATGTCCTGACTCAAGTCT  Raphanus sativus var. oleiformis
EV571930       --> AGCCGACAAGCAAAACAAGTGAAAACCATACAATGTCCTGATTCAAGTCT  Raphanus raphanistrum subsp. landra
EV573734       --> AGCCGACAAGCAAAACAAGTGAAAACCATACAATGTCCTGATTCAAGTCT  Raphanus raphanistrum subsp. landra
FD552697       --> AGCCGACAAGCAAAACAAGTGAAAACCATACAATGTCCTGATTCAAGTCT  Raphanus raphanistrum subsp. landra
FD936867       --> AGCCGACAAGCAAAACAAGTGAAAACCATACGATGTCCTGATTCAAGTCT  Raphanus sativus var. oleiformis
FD974555       --> AGCCGACAAGCAAAACAAGTGAAAACCAAACGATGTCCTGATTCAAGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN09538        --> TGGGCTGTGAAGGCTTCCACGTTCCTGGTATCTCAACACCATGAGGTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- .........AAGGCTTCCACGTTCCTGGTATCTCAACACCATGAGGTCCG
EY921939       <-- ..................................................
EV552221       <-- ..................................................
EV566733       <-- ..................................................
EV569140       <-- ..................................................
FD978280       <-- ..................................................
EV572469       --> TGGGCTGTGAAGGCTTCCACGTTCCTGGTATCTCAACACCATGAGGTCCG
EY917995       --> TGGGCTGTGAAGGCTTCCACGTTCCTGGTATCTCAACACCATGAGGTCCG
FD565918       --> TGGGCTGTGAAGGCTTCCACGTTCCTGGTATCTCAACACCATGAGGTCCG
EV571930       --> TGGGCTGTGAAGGCTTCCACGTTCCTGGTATCTCAACACCATGAGGTCCG
EV573734       --> TGGGCTGTGAAGGCTTCCACGTTCCTGGTATCTCAACACCATGAGGTCCG
FD552697       --> TGGGCTGTGAAGGCTTCCACGTTCCTGGTATCTCAACACCATGAGGTCCG
FD936867       --> TGGGCTGTGAAGGCTTCCACGTTCCTGGTATCTCAACACCATGAGGTCCG
FD974555       --> TGGGCTGTGAAGGCTTCCACGTTCCTGGTATCTCAACACCATGAGGTCCG

               201    -    251
UN09538        --> ATTCTGTTACGTGATATGAAATTCACAACTAGATTCGCAAACTCCTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ATTCTGTTACGTGATATGAAATTCACTACTAGATTCGCAAACTCCTCTGG
EY921939       <-- ..................................................
EV552221       <-- ..................................................
EV566733       <-- ..................................................
EV569140       <-- ..................................................
FD978280       <-- ..................................................
EV572469       --> ATTCTGTTACGTGATATGAAATTCACAACTAGATTCCCAAACTCCTCTGG
EY917995       --> ATTCTGTTACGTGATATGAAATTCACAACTAGATTCGCAAACTCCTCTGG
FD565918       --> ATTCTGTTACGTGATATGAAATTCACTACTAGATTCGCAAACTCCTCTGG
EV571930       --> ATTCTGTTACGTGATATGAAATTCACAACTAGATTCACAAACTCCTCTGG
EV573734       --> ATTCTGTTACGTGATATGAAATTCACAACTAGATTCGCAAACTCCTCTGG
FD552697       --> ATTATGTTACGTGATATGAAATTCACAACTAGATTCGCAAACTCCTCTGG
FD936867       --> ATTCTGTTACGTGATATGAAATTCACTACTAGATTCGCAAACTCCTCTGG
FD974555       --> ATTCTGTTACGTGATATGAAATTCACAACTAGATTCGCAAACTCCTCAGG

               251    -    301
UN09538        --> TACATCTTCCTGTATAGCATGTCCAGTGTGTTTGACCACAATCATTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- TACATCTTCCTGTATAGCATGTCCGGTGTGTTTGACCACAATCATTTGAA  Raphanus sativus var. oleiformis
EY921939       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV552221       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566733       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV569140       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD978280       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572469       --> TACATCTTCCTGTATAGCATGTCCAGTGTGTTTGACCACAATCATTTGAA  Raphanus raphanistrum subsp. landra
EY917995       --> TACATCTTCCTGTATAGCATGTCCAGTGTGTTTGACCACAATCATTTGAA  Raphanus raphanistrum subsp. landra
FD565918       --> TACATCTTCCTGTATAGCATGTCCGGTGTGTTTGACCACAATCATTTGAA  Raphanus sativus var. oleiformis
EV571930       --> TACATCTTCCTGTATAGCATGTCCAGTGTGTTTGACCACAATCATTTGAA  Raphanus raphanistrum subsp. landra
EV573734       --> TACATCTTCCTGTATAGCATGTCCAGTGTGTTTGACCACAATCATTTGAA  Raphanus raphanistrum subsp. landra
FD552697       --> TACATCTTCCTGTATAGCATGTCCAGTGTGTTTGACCACAATCATTTGAA  Raphanus raphanistrum subsp. landra
FD936867       --> TACATCTTCCTGTATAGCATGTCCGGCGTGTTTGACCACAATCATTTGAA  Raphanus sativus var. oleiformis
FD974555       --> TACATCTTCCTGTATAGCATGTCCGGGGTGTTTGACCACAATCATCTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN09538        --> ACTTTCCTTGCATTTGACCAATTGTGAGGGTCCGGTCCAATCTGTCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ACTTTCCTTGCATTTGACCAATTGTGAGCGTCCGGTCCAATCTGTCAGTT
EY921939       <-- ..........gcaTTGACCAATTGTGAGGGTCCGGTCCAATCTGTCGGTT
EV552221       <-- ..................................................
EV566733       <-- ..................................................
EV569140       <-- ..................................................
FD978280       <-- ..................................................
EV572469       --> ACTTTCCTTGCATTTGACCAATTGTGAGGGTCCGGGCCAATCTGTCAGTT
EY917995       --> ACTTTCCTTGCATTTGACCAATTGTGAGGGTCCGGTCCAATCTGTCGGTT
FD565918       --> ACTTTCCTTGCATTTGACCAATTGTGAGCGTCCGGTCCAATCTGTCAGTT
EV571930       --> ACTTTCCTTGCATTTGACCAATTGTGAGGGTCCGGTCCAATCTGTCAGTT
EV573734       --> ACTTTCCTTGCATTTGACCAATTGTGAGGGTCCGGTCCAATCTGTCGGTT
FD552697       --> ACTTTCCTTGCATTTGACCAATTGTGAGGGTCCGGTCCAATCTGTCAGTT
FD936867       --> ACTTTCCTTGCATTTGACCAATTGTGAGCGTCCGGTCCAATCTGTCAGTT
FD974555       --> ACTTTCCTTGCATTTGACCAATTGTGAGGGTCCGGTCCAATCTGTCGGTT

               351    -    401
UN09538        --> CCAGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- CCAGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTGA
EY921939       <-- CCGGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTGA
EV552221       <-- ..................................................
EV566733       <-- ..................................................
EV569140       <-- ..................................................
FD978280       <-- ..................................................
EV572469       --> CCAGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTG.
EY917995       --> CCGGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTGA
FD565918       --> CCAGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTGA
EV571930       --> CCAGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTGA
EV573734       --> CCAGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTGA
FD552697       --> CCAGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTGA
FD936867       --> CCAGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTGA
FD974555       --> CCAGCTAATAGCAAGAGTTTTGGAACAGGAGATGACAAGAACTTCTCTGA

               401    -    451
UN09538        --> GAGACCTTCGTACCAGCCTTTCCAATATTGCTCTGTTTGCTCTAGACGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- GAGACCTTCGTACCAGCCTTTCCAATACTGCTCTGTTTGCTCTAGACGTG  Raphanus sativus var. oleiformis
EY921939       <-- GAGACCTTCGTACCAGCCTTTCCAATATTGCTCTGTTTGCTCTAGACGTG  Raphanus raphanistrum subsp. landra
EV552221       <-- .......................AATATTGCTCTGTTTGCTCTAGACGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566733       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV569140       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD978280       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572469       --> ..................................................  Raphanus raphanistrum subsp. landra
EY917995       --> GAGACCTTCGTACCAGCCTTTCCAATATTGCTCTGTTTGCTCTAGACGTG  Raphanus raphanistrum subsp. landra
FD565918       --> GAGACCTTCGTACCAGCCTTTCCAATACTGCTCTGTTTGCTCTAGACGTG  Raphanus sativus var. oleiformis
EV571930       --> GAGACCTTCGTACCAGCCTTTCCAATACTGCTCTGTTTGCTCTAGACGTG  Raphanus raphanistrum subsp. landra
EV573734       --> GAGACCTTCGTACCAGCCTTTCCAATATTGCTCTGTTTGCTCTAGACGTG  Raphanus raphanistrum subsp. landra
FD552697       --> GAGACCTTCGTACCAGCCTTTCCAATACTGCTCTGTTTGCTCTAGACGTG  Raphanus raphanistrum subsp. landra
FD936867       --> GAGACCTTCGTACCAGCCTTTCCAATACTGCTCTGTTTGCTCTAGACGTG  Raphanus sativus var. oleiformis
FD974555       --> AAGACCTTCGTACCAGCCTTTCCAATATTGCTCTGTTTGCTCTAGACGTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN09538        --> TCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGAGTTGTGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- TCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGAGTTGTGGGG
EY921939       <-- TCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGAGTTGTGGGG
EV552221       <-- TCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGAGTTGTGGGG
EV566733       <-- ..................................................
EV569140       <-- ..................................................
FD978280       <-- ..................................................
EV572469       --> ..................................................
EY917995       --> TCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGAGTTGTGGGG
FD565918       --> TCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGAGTTGTGGGG
EV571930       --> CCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGAGTTGTGGGG
EV573734       --> TCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGAGTTGTGGGG
FD552697       --> TCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGAGTTGTGGGG
FD936867       --> TCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGAGTTGTGGGG
FD974555       --> TCCGGTAAGTGTAGCAGTGTTTTGAATCATCGTATATGAGA.........

               501    -    551
UN09538        --> ATGGAGACGCGAGCAGACTCGATGTTCCTTAATGACCCTCCTCTAACGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ATGGAGACGCGAGCAGACTCGATGTTCCTTAATGACCCTCCTCTAACGCT
EY921939       <-- ATGGAGACGCGAGCAGACTCGATGTTCCTTAATGACCCTCCTCTAACGCT
EV552221       <-- ATGGAGACGCGAGCAGACTCGATGTTCTTTAATGACCCTCCTCTAACGCT
EV566733       <-- ..............................AATGACCCTCCTCTAACGCT
EV569140       <-- ...............................ATGACCCTCCTCTAACGCT
FD978280       <-- ..................................................
EV572469       --> ..................................................
EY917995       --> ATGGAGACGCGAGCAGACTCGATGTTCCTTAATGACCCTCCTCTAACGCT
FD565918       --> ATGGAGACGCGAGCAGACTCGATGTTCCTTAATGACCCTCCTCTAACGCT
EV571930       --> ATGGAGACGCGAGCGGACTCGATGTTCCTTAATGACCCTCCTCTAACGCT
EV573734       --> ATGGAGACGCGAGCAGACTCGATGTTCCTTAATGACCCTCCTCTAACGCT
FD552697       --> ATGGAGACGCGAGCGGACTCGATGTTCCTTAATGACCCTCCTCTAACGCT
FD936867       --> ATGGAGACGCGAGCAGACTCGATGTTCCTTAATGACCCTCCTCTAACGCT
FD974555       --> ..................................................

               551    -    601
UN09538        --> GTACTCAATTGCTTTTTGGATGCTGGGAAAGTGTTGCATTCTGTTCGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- GTACTCAATTGCTTTTTGGATGCTGGGAAAATGTTGCATTCTGTTCGAAA  Raphanus sativus var. oleiformis
EY921939       <-- GTACTCAATTGCTTTTTGGATGCTGGGAAAGTGTTGCATTCTGTTCGAAA  Raphanus raphanistrum subsp. landra
EV552221       <-- GTACTCAATTGCTTTTTGGATGCTGGGAAAATGTTGCATTCTGTTTGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566733       <-- GTACTCAATTGCTTTTTGGATGCTGGGAAAGTGTTGCATTCTGTTCGAAA  Raphanus raphanistrum subsp. landra
EV569140       <-- GTACTCAATTGCTTTTTGGATGCTGGGAAAGTGTTGCATTCTGTTCGAAA  Raphanus raphanistrum subsp. landra
FD978280       <-- ...................ATGCTGGGAAAATGTTGCATTCTGTT-GAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572469       --> ..................................................  Raphanus raphanistrum subsp. landra
EY917995       --> GTACTCAATTGCTTTTTGGATGCTGGGAAAGTGTTGCATTCTGTTCGAAA  Raphanus raphanistrum subsp. landra
FD565918       --> GTACTCAATTGCTTTTTGGATGCTGGGAAAATGTTGCATTCTGTTCGAAA  Raphanus sativus var. oleiformis
EV571930       --> GTACTCAATTGCTTTTTGGATGCTGGGAAAGTGTTGCATTCTGTTTGAAA  Raphanus raphanistrum subsp. landra
EV573734       --> GTACTCAATTGCTTTTTGGATGCTGGGAAAGTGTTGCATTCTGTTCGAAA  Raphanus raphanistrum subsp. landra
FD552697       --> GTACTCAATTGCTTTTTGGATGCTGGGAAAGTGTTGCATTCTGTTTGAAA  Raphanus raphanistrum subsp. landra
FD936867       --> GTACTCAATTGCTTTTTGGATGCTGGGAAAATGTTGCATTCTGTTCGAAA  Raphanus sativus var. oleiformis
FD974555       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN09538        --> GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
EY921939       <-- GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
EV552221       <-- GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
EV566733       <-- GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
EV569140       <-- GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
FD978280       <-- GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACTCTCAACAACA
EV572469       --> ..................................................
EY917995       --> GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
FD565918       --> GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
EV571930       --> GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
EV573734       --> GAATTTTCTGCATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
FD552697       --> GAATTTTCTGAATGTGAATCAAAGAGGCAACAGCAGTACCCTCAACAACA
FD936867       --> GAATTCTCTGCATGTGAATCAAAGAGGCAACAGCAGCACCCTCAACAACA
FD974555       --> ..................................................

               651    -    701
UN09538        --> TCCACTACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- TCCACTACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
EY921939       <-- TCCACAACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
EV552221       <-- TCCACTACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
EV566733       <-- TCCACAACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
EV569140       <-- TCCACAACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
FD978280       <-- TCCACTACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
EV572469       --> ..................................................
EY917995       --> TCCACAACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
FD565918       --> TCCACTACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
EV571930       --> TCCACTACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
EV573734       --> TCCACAACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
FD552697       --> TCCACTACGACAAGCCCAGCCAAGCTAGGCAATGTTTTGTTTGCAGCAAC
FD936867       --> TCCACTACGACAAGCC..................................
FD974555       --> ..................................................

               701    -    751
UN09538        --> TTGCACAGCGACCGAACCTCCCATGCTGTGACCAACTAGCACAATAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- TTGCACAGCGACCGAACCTCCCATGCTGTGACCAACTAGCACAATAGCAG
EY921939       <-- TTGCACAGCGACCGAACCTCCCATGCTGTGACCAACTAGCACAATAGCAG
EV552221       <-- TTGCACAGCGACCGAACCTCCCATGCTGTGACCAACTAGCACAATAGCTG
EV566733       <-- TTGCACAGCGACCGAACCTCCCATGCTGTGACCAACTAGCACAATAGCAG
EV569140       <-- TTGCACAGCGACCGAACCTCCCATGCTGTGACCAACTAGCACAATAGCAG
FD978280       <-- TTGCACAGCGACCGAACCTCCCATGCTGTGACCAACTAGCACAATAGCTG
EV572469       --> ..................................................
EY917995       --> TTGCACAGCGACCGAACCTCCCATGCTGTGACCAACTAGCACAATAGCAG
FD565918       --> TTGCACAGCGACCGAACCTCCCATGCTGTGACCAACTAGCACAATA....
EV571930       --> TTGCACAGCGACGGAACCTCCCATGCTGTGACCAACTAGCACAATAGCAG
EV573734       --> TTGCACAGCGACCGAACCTCCCATGCTGTGACCAACTAGCACAATAGCAG
FD552697       --> TTGCACAGCGACGGAACCTCCCATGCTGTGACCAACTAGCACAATAGCAG
FD936867       --> ..................................................
FD974555       --> ..................................................

               751    -    801
UN09538        --> GAGGAGAATCTCCATACAATTCCTTAATCACAGCAACAACATCACTGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- GAGGAGAATCTCCATACAATTCCTTAACCACAGCCACAACATCACTGCTC
EY921939       <-- GAGGAGAATCTCCATACAATTCCTTAATCACAGCAACAACATCACTGCTC
EV552221       <-- GAGGAGAATCTCCATACAATTCCTTAACCACAGCCACAACATCACTGCTC
EV566733       <-- GAGGAGAATCTCCATACAATTCCTTAATCACAGCAACAACATCACTGCTC
EV569140       <-- GAGGAGAATCTCCATACAATTCCTTAATCACAGCAACAACATCACTGCTC
FD978280       <-- GAGGAGAATCTCCATACAATTCCTTAACCACAGCCACAACATCACTGCTC
EV572469       --> ..................................................
EY917995       --> GAGGAGAATCTCCATACAATTCCTTAATCACAGCAACAACATCACTGCTC
FD565918       --> ..................................................
EV571930       --> GAGGAGAATCTCCATACAATTCCTTAACCACAGCCACAACATCACTGCTC
EV573734       --> GAGGAGAATCTCCATACAATTCCTTAATCACAGCAACAACATCACTGCTC
FD552697       --> -AGGAGAATCTCCATACAATTCCTTAACCACAG.................
FD936867       --> ..................................................
FD974555       --> ..................................................

               801    -    851
UN09538        --> ATTGTCTCAAGCGATAAGTCCAGTTCGTTCTCAGAAACAGATTTACCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ATTGTCTCGAGGGATAAGTCCAGTTCGTTCTCAGAAACCGATTTACCGTG
EY921939       <-- ATTGTCTCAAGCGATAAGTCCAGTTCATTCTCAGAAACAGATTTACCGTG
EV552221       <-- ATTGTCTCGAGCGATAAGTCCAGTTCGTTCTCAGAAACGGATTTACCATG
EV566733       <-- ATTGTCTCAAGCGATAAGTCCAGTTCATTCTCAGAAACAGATTTACCGTG
EV569140       <-- ATTGTCTCAAGCGATAAGTCCAGTTCATTCTCAGAAACAGATTTACCGTG
FD978280       <-- ATTGTCTCGAGCGATAAGTCCAGTTCGTTCTCAGAAACGGATTTACCATG
EV572469       --> ..................................................
EY917995       --> ATTGTCTCAAGCGATAAGTCCAGTTC-ATCTCAGAAACAGATTTACCGTG
FD565918       --> ..................................................
EV571930       --> ATTGTCTCGAGGGATAAGTCCAGTTCGTTCTCAGAAACCGATTTACCGTG
EV573734       --> ATTGTCTCAAGCGA....................................
FD552697       --> ..................................................
FD936867       --> ..................................................
FD974555       --> ..................................................

               851    -    901
UN09538        --> TCCTCTCAAGTCCATAGCAACCACACGTGCTTTCTCCTTGATCTTACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- TCCTCTCAAGc.......................................
EY921939       <-- TCCTCTCAAGTCCATAGCAACCACACGTGCTTTCTCCTTGATCTTACTTG
EV552221       <-- TCCTCTCAAGTCCATCGCAACTACACGTGCTTTCTCCTTGATCTTACTTG
EV566733       <-- TCCTCTCAAGTCCATAGCAACCACACGTGCTTTCTCCTTGATCTTACTTG
EV569140       <-- TCCTCTCAAGTCCATAGCAACCACACGTGCTTTCTCCTTGATCTTACTTG
FD978280       <-- TCCTCTCAAGTCCATCGCAACTACACGTGCTTTCTCCTTGATCTTACTTG
EV572469       --> ..................................................
EY917995       --> ..................................................
FD565918       --> ..................................................
EV571930       --> TCCTCTCAAGTCCATAGCAACCACACGTGCTTTCTCCTTGATCTTACTTG
EV573734       --> ..................................................
FD552697       --> ..................................................
FD936867       --> ..................................................
FD974555       --> ..................................................

               901    -    951
UN09538        --> CCACTATAGAAAACGAGAGCCCAGAGAAGCCACCTCCATGGAGACAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................
EY921939       <-- CCACTATAGAAAACGAGAGCCCAGAGAAGCCACCTCCATGGAGc......
EV552221       <-- CCACTATAGAAAACGAGGGCCCAGAGAAGCCACCTCCATGGAGACAAAAG
EV566733       <-- CCACTATAGAAAACGAGAGCCCAGAGAAGCCACCTCCATGGAGACAAAAG
EV569140       <-- CCACTATAGAAAACGAGAGCCCAGAGAAGCCACCTCCATGGAGACAAAAG
FD978280       <-- CCACTATAGAAAACGAGAGCCCAGAGAAGCCACCTCCATGGAGACAAAAG
EV572469       --> ..................................................
EY917995       --> ..................................................
FD565918       --> ..................................................
EV571930       --> CCACTAT...........................................
EV573734       --> ..................................................
FD552697       --> ..................................................
FD936867       --> ..................................................
FD974555       --> ..................................................

               951    -   1001
UN09538        --> ACAACAGGTCCTTCTGTTCCTGCCATGTACACGTGAAATACATCGTTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................
EY921939       <-- ..................................................
EV552221       <-- ACAACAGGTCCTTCTGTTCCTGCCATGTACACGTGAAATACATCGTTGGA
EV566733       <-- ACAACAGGTCCTTCTGTTCCTGCCATGTACACGTGAAATACATCGTTGGA
EV569140       <-- ACAACAGGTCCTTCTGTTCCTGCCATGTACACGTGAAATACATCGTTGGA
FD978280       <-- ACAACAGGTCCTTCTGTTCCTGCCATGTACACGTGAAATACATCGTTGGA
EV572469       --> ..................................................
EY917995       --> ..................................................
FD565918       --> ..................................................
EV571930       --> ..................................................
EV573734       --> ..................................................
FD552697       --> ..................................................
FD936867       --> ..................................................
FD974555       --> ..................................................

               1001   -   1051
UN09538        --> TCCAGGGATTGATACATCGTCTTCTTTGTCAAAGTAGCTTGTCCATTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................
EY921939       <-- ..................................................
EV552221       <-- TCCAGGGATTGATACATCGTCTTCTTTGTCAAAGTAGCTTGTCCATTCTA
EV566733       <-- TCCAGGGATTGATACATCGTCTTCTTTGTCAAAGTAGCTTGTCCATTCTA
EV569140       <-- TCCAGGGATTGATACATCGTCTTCTTTGTCAAAGTAGATTGTCCATTCTA
FD978280       <-- TCCAGGGATTGATACATCGTCTTCTTTGTCAAAGTAGCTTGTCCATTCTA
EV572469       --> ..................................................
EY917995       --> ..................................................
FD565918       --> ..................................................
EV571930       --> ..................................................
EV573734       --> ..................................................
FD552697       --> ..................................................
FD936867       --> ..................................................
FD974555       --> ..................................................

               1051   -   1101
UN09538        --> CAGGCGAATACTTCTCCGTAGAACTCGTAGAAGGAGGACGAAGAGGACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................
EY921939       <-- ..................................................
EV552221       <-- CAGGCGAATACTTCTCCGAAGAACTCGTAGAAGGAGGACGAAGAGGACGA
EV566733       <-- TAGGCGAATACTTCTCCGTAGAACTCGTAGAAGGAGGACGAAGAGGACGA
EV569140       <-- CAGGCGAATACTTCTCCGTAGAACTCGTAGAAGGAGGACGAAGAGGACGA
FD978280       <-- CAGGCGAATACTTCTCCGAAGAACTCGTAGAAGGAGGACGAAGAGGACGA
EV572469       --> ..................................................
EY917995       --> ..................................................
FD565918       --> ..................................................
EV571930       --> ..................................................
EV573734       --> ..................................................
FD552697       --> ..................................................
FD936867       --> ..................................................
FD974555       --> ..................................................

               1101   -   1151
UN09538        --> GTGGCGAAGACGGACGCCGGAGCTGGTTCTCCGTCGGGGATATCCTCGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................
EY921939       <-- ..................................................
EV552221       <-- GTGGCGAAGACGGACGCCGGAGCTGGTTATCCGTCGGAGATATCCTCGGG
EV566733       <-- GTGGCGAAGACGGACGCCGGAGCTGATTCTCCGTCGGGGATATCCTCGGG
EV569140       <-- GTGGCGAAGACGGACGCCGGAGCTGGTTCTCCGTCGGGGATATCCTCGGG
FD978280       <-- GTGGCGAAGACGGACGCCGGAGCTGGTTCTCCGTCGGAGATATCCTCGGG
EV572469       --> ..................................................
EY917995       --> ..................................................
FD565918       --> ..................................................
EV571930       --> ..................................................
EV573734       --> ..................................................
FD552697       --> ..................................................
FD936867       --> ..................................................
FD974555       --> ..................................................

               1151   -   1201
UN09538        --> AAGGGGATTCAAATTTGAAGAAGGAATCCATCGTTGCAAGGCTTCAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................
EY921939       <-- ..................................................
EV552221       <-- AAGGGGATTCAAATTTGAAGAAGGA-TCCATCGTTGCAAGGCTTCAGCTC
EV566733       <-- AAGGGGATTCAAATTTGAAGA-GGAATCCATCGCTGCAAGGCTTCAGCTC
EV569140       <-- AAGGGGATTCAAATTTGAAGA-GGAATCCATCGCTGCAAGGCTTCAGCTC
FD978280       <-- AAGGGGATTCAAATTTGAAGAAGGA-TCCATCGTTGCAAGGCTTCAGCTC
EV572469       --> ..................................................
EY917995       --> ..................................................
FD565918       --> ..................................................
EV571930       --> ..................................................
EV573734       --> ..................................................
FD552697       --> ..................................................
FD936867       --> ..................................................
FD974555       --> ..................................................

               1201   -   1251
UN09538        --> TG-GGGAATTTCGCAAATAGATGATCAAATTGAAATGATGTCGCCCCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................
EY921939       <-- ..................................................
EV552221       <-- TGcc..............................................
EV566733       <-- TG-GGGAATTTCGCAAATAGATGATCAAATTGAAATGATGTCGCCCCAGA
EV569140       <-- TG-GGGAATTTCGCAAATAGATGATCAAATTGAAATGATGTCGCCCCAGA
FD978280       <-- TGCGGGAATTTCGCAAATAGATGATCAAATTGAAATGATGTCGCCCCAGA
EV572469       --> ..................................................
EY917995       --> ..................................................
FD565918       --> ..................................................
EV571930       --> ..................................................
EV573734       --> ..................................................
FD552697       --> ..................................................
FD936867       --> ..................................................
FD974555       --> ..................................................

               1251   -   1301
UN09538        --> TCTTTCAGTTTCCGTTCCCACTCTACAATTCGCTTTTCTCCAGCTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ..................................................
EY921939       <-- ..................................................
EV552221       <-- ..................................................
EV566733       <-- TCTTTCAGTTTCCGTTCCCACTCTACAATTCGCTTTTCTCCAGCTTTTTT
EV569140       <-- TCTTTCAGTTTCCGTTCCCACTCTACAATTCGCTTTTCTCCAGCTTTTTT
FD978280       <-- TCTTTCAGTTTCCGTTCCCACTCTACAATTCGCTTTTCTCCcc.......
EV572469       --> ..................................................
EY917995       --> ..................................................
FD565918       --> ..................................................
EV571930       --> ..................................................
EV573734       --> ..................................................
FD552697       --> ..................................................
FD936867       --> ..................................................
FD974555       --> ..................................................

               1301   -   1351
UN09538        --> TTTT---GTTTCGGTCACAGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~
FD561881       <-- ........................
EY921939       <-- ........................
EV552221       <-- ........................
EV566733       <-- TTTTTTTGTTTCGGTCACccc...
EV569140       <-- TTTT---GTTTCGGTCACAGTTCC
FD978280       <-- ........................
EV572469       --> ........................
EY917995       --> ........................
FD565918       --> ........................
EV571930       --> ........................
EV573734       --> ........................
FD552697       --> ........................
FD936867       --> ........................
FD974555       --> ........................