1      -     51
UN09559        --> GAATTAGAAGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD574240       <-- GAATTAGAAGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
EY904363       <-- ......ggAGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
EY936781       <-- ......ggAGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
EY902078       <-- .......ggGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
EY896158       <-- ..........ggATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
FD537554       <-- .......................CAATAAGACGAAGTCTGCATTTGTGCA
FD960341       <-- .......................CAATAAGACGAAGTCTGCATTTGTGCA
FD570181       --> GAATTAGAAGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
FD965029       --> .....gGAAGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
EY908701       --> ......ggAGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
EY941142       --> ......ggAGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
EY905708       --> .......ggGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
FD534443       --> .......ggGATATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
EV526007       --> ..........ggATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
EY900674       --> ..........ggATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
FD533772       --> ..........ggATTTATTATTACAATAAGACGAAGTCTGCATTTGTGCA
EY904996       --> ..............ggATTATTACAATAAGACGAAGTCTGCATTTGTGCA
FD570705       --> ..............ggATTATTACAATAAGACGAAGTCTGCATTTGTGCA
FD541225       --> .......................CAATAAGACGAAGTCTGCATTTGTGCA
FD964277       --> .......................CAATAAGACGAAGTCTGCATTTGTGCA
FD535473       --> ..................................................
EY907781       --> ..................................................
EY907622       --> ..................................................

               51     -    101
UN09559        --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD574240       <-- AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
EY904363       <-- AGTAGAAAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
EY936781       <-- AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
EY902078       <-- AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
EY896158       <-- AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
FD537554       <-- AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
FD960341       <-- AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
FD570181       --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
FD965029       --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
EY908701       --> AGTAGAAAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
EY941142       --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
EY905708       --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
FD534443       --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
EV526007       --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
EY900674       --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
FD533772       --> AGTA--AAAAAA-TATAATCCATACTGAATCATGAGGTCTAGTAATATTT
EY904996       --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
FD570705       --> AGTA--AAAAAA-TATAATCCATACTGAATCATGAGGTCTAGTAATATTT
FD541225       --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
FD964277       --> AGTA--AAAAAAATATAATCCATACTGAATCATGAGGTCTAGTAATATTT
FD535473       --> .............gggAATCCATACTGAATCATGAGGTCTAGTAATATTT
EY907781       --> ....................gATACTGAATCATGAGGTCTAGTAATATTT
EY907622       --> ..................................................

               101    -    151
UN09559        --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD574240       <-- TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EY904363       <-- TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EY936781       <-- TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EY902078       <-- TCATGGTTTCTTGTGTTTTCATCGTACTCGTCCTCAGCAATGTTCAAGAT
EY896158       <-- TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
FD537554       <-- TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
FD960341       <-- TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
FD570181       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
FD965029       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EY908701       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EY941142       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EY905708       --> TCATGGTTTCTTGTGTTTTCATCGTACTCGTCCTCAGCAATGTTCAAGAT
FD534443       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EV526007       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EY900674       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
FD533772       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EY904996       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
FD570705       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAAT--TCAAGAT
FD541225       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
FD964277       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
FD535473       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EY907781       --> TCATGGTTTCTTGTGTTTTCATTGTACTCGTCCTCAGCAATGTTCAAGAT
EY907622       --> ..................................................

               151    -    201
UN09559        --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD574240       <-- GTGAGTGCAAATGCTTGTTTTGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus sativus cv Early Scarlet Globe
EY904363       <-- GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY936781       <-- GTGAGTGCAAATGCTTGTTTTGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus sativus cv Early Scarlet Globe
EY902078       <-- GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY896158       <-- GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. maritimus
FD537554       <-- GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960341       <-- GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. maritimus
FD570181       --> GTGAGTGCAAATGCTTGTTTTGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus sativus cv Early Scarlet Globe
FD965029       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. maritimus
EY908701       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941142       --> GTGAGTGCAAATGCTTGTTTTGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus sativus cv Early Scarlet Globe
EY905708       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD534443       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. maritimus
EV526007       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. maritimus
EY900674       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. maritimus
FD533772       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. maritimus
EY904996       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAACAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570705       --> GTGAGTGCAAATGCTTGTTTTGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus sativus cv Early Scarlet Globe
FD541225       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964277       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. maritimus
FD535473       --> GTGAGTGCAAATGCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. maritimus
EY907781       --> GTGAGTGCAAATGCTTGTTATGCC-TGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907622       --> ............GCTTGTTATGCCGTGGAAGAACTTGTGGGTTGCAGTCC  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN09559        --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD574240       <-- CTCTGCATGTCTTGCCAAAGCTAAAAAGTATCCACGGATGGCTAAGAGAG  Raphanus sativus cv Early Scarlet Globe
EY904363       <-- CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY936781       <-- CTCTGCATGTCTTGCCTAAGCTAAAAAGTATCCACGGATGGCTAAGAGAG  Raphanus sativus cv Early Scarlet Globe
EY902078       <-- CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY896158       <-- CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. maritimus
FD537554       <-- CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960341       <-- CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. maritimus
FD570181       --> CTCTGCATGTCTTGCCAAAGCTAAAAAGTATCCACGGATGGCTAAGAGAG  Raphanus sativus cv Early Scarlet Globe
FD965029       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGTTAAGAGAG  Raphanus raphanistrum subsp. maritimus
EY908701       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941142       --> CTCTGCATGTCTTGCCTAAGCTAAAAAGTATCCACGGATGGCTAAGAGAG  Raphanus sativus cv Early Scarlet Globe
EY905708       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD534443       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. maritimus
EV526007       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. maritimus
EY900674       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. maritimus
FD533772       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. maritimus
EY904996       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570705       --> CTCTGCATGTCTTGCCAAAGCTAAAAAGTATCCACGGATGGCTAAGAGAG  Raphanus sativus cv Early Scarlet Globe
FD541225       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964277       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. maritimus
FD535473       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. maritimus
EY907781       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907622       --> CTCTGCATGTCTTGCCAAAGCTAAAACGTATCCACGCATGGCTAAGAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN09559        --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD574240       <-- AAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGTGACTGG  Raphanus sativus cv Early Scarlet Globe
EY904363       <-- GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY936781       <-- AAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus sativus cv Early Scarlet Globe
EY902078       <-- GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY896158       <-- GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. maritimus
FD537554       <-- GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960341       <-- GCGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. maritimus
FD570181       --> AAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGTGACTGG  Raphanus sativus cv Early Scarlet Globe
FD965029       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. maritimus
EY908701       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941142       --> AAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus sativus cv Early Scarlet Globe
EY905708       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD534443       --> GAGGACTTAAATGCAAATGTGAGA..........................  Raphanus raphanistrum subsp. maritimus
EV526007       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. maritimus
EY900674       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. maritimus
FD533772       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. maritimus
EY904996       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570705       --> AAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus sativus cv Early Scarlet Globe
FD541225       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964277       --> GCGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. maritimus
FD535473       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. maritimus
EY907781       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907622       --> GAGGACTTAAATGCAAATGTGAGAATCCAAAAACGTGTTACTGCGACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)

               301    -    351
UN09559        --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD574240       <-- ACATGTAAACCTTAATAAATAAGTTTTTTTTAATTTTATTTCTAAAATTT  Raphanus sativus cv Early Scarlet Globe
EY904363       <-- ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY936781       <-- ACATGTAAACCTTAATAAATAAGTTTTTTTTAATTTTATTTCTAAAATTT  Raphanus sativus cv Early Scarlet Globe
EY902078       <-- ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY896158       <-- ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. maritimus
FD537554       <-- ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960341       <-- ACATGTAAACCTTAATAAATAAGTTTTTT.....................  Raphanus raphanistrum subsp. maritimus
FD570181       --> ACATGTAAACCTTAATAAATAAGTTTTTTTTAATTTTATTTCTAAAATTT  Raphanus sativus cv Early Scarlet Globe
FD965029       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. maritimus
EY908701       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941142       --> ACATGTAAACCTTAATAAATAAGTTTTTTTTAATTTTATTTCTAAAATTT  Raphanus sativus cv Early Scarlet Globe
EY905708       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD534443       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV526007       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. maritimus
EY900674       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. maritimus
FD533772       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. maritimus
EY904996       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570705       --> ACATGTAAACCTTAATAAATAAGTTTTTTTTAATTTTATTTCTAAAATTT  Raphanus sativus cv Early Scarlet Globe
FD541225       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964277       --> ACATGTAAACCTTAATAAATAAGTTTTTT.....................  Raphanus raphanistrum subsp. maritimus
FD535473       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. maritimus
EY907781       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907622       --> ACATGTAAACCTTAATAAATAAGTTTTTT---ATTTTATTTCTAAAATTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN09559        --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD574240       <-- ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
EY904363       <-- ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
EY936781       <-- ACAATTAAATAATACATAAGAAGCTTGC......................
EY902078       <-- ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
EY896158       <-- ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
FD537554       <-- ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
FD960341       <-- ..................................................
FD570181       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
FD965029       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
EY908701       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
EY941142       --> ACAATTAAATAATACATAAGAAGCTTGC......................
EY905708       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
FD534443       --> ..................................................
EV526007       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
EY900674       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
FD533772       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
EY904996       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
FD570705       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
FD541225       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
FD964277       --> ..................................................
FD535473       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA
EY907781       --> ACAATTAAATA.......................................
EY907622       --> ACAATTAAATAATACATAAGAAGCTTGCAAATGTTGAAATCTCAGATAAA

               401    -    451
UN09559        --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD574240       <-- ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
EY904363       <-- ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
EY936781       <-- ..................................................
EY902078       <-- ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGTTTCTTGTTT
EY896158       <-- ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
FD537554       <-- ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
FD960341       <-- ..................................................
FD570181       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
FD965029       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
EY908701       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
EY941142       --> ..................................................
EY905708       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGTTTCTTGTTT
FD534443       --> ..................................................
EV526007       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
EY900674       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
FD533772       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
EY904996       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACC................
FD570705       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
FD541225       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
FD964277       --> ..................................................
FD535473       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGTTT
EY907781       --> ..................................................
EY907622       --> ACTTTGTGAAGACTGTCGAATATTATTTTGTACCTAATTGCTTCTTGT..

               451    -    501
UN09559        --> TATAACTTAGTAAAATTATTTTTATTATTCAAAAAGTGCTTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD574240       <-- TATAACTTAG..................................
EY904363       <-- TATAACTTAGTAAAATTATTTTTATT..................
EY936781       <-- ............................................
EY902078       <-- TATAACTTAG..................................
EY896158       <-- TATAACTTAG..................................
FD537554       <-- TATAACTTAG..................................
FD960341       <-- ............................................
FD570181       --> TATAACTTAG..................................
FD965029       --> TATAACTTAGTAAAATTATTTTTATT..................
EY908701       --> TATAACTTAGTAAAATTATTTTTATT..................
EY941142       --> ............................................
EY905708       --> TATAACTTAG..................................
FD534443       --> ............................................
EV526007       --> TATAACTTAG..................................
EY900674       --> TATAACTTAG..................................
FD533772       --> TATAACTTAGTAAAATTATTTTTATTg.................
EY904996       --> ............................................
FD570705       --> TATAACTTAG..................................
FD541225       --> TATAACTTAGTAAAATTATTTTTATTATTCAAAAAGTGCTTGGC
FD964277       --> ............................................
FD535473       --> TATAACTTAG..................................
EY907781       --> ............................................
EY907622       --> ............................................