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Alignment for radish unigene UN09699

               1      -     51
UN09699        --> GCTCTGGGAGTGTTGCTATTGACAGTGGCAACAACCATCCCAAGCATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> GCTCTGGGAGTGTTGCTATTGACAGTGGCAACAACCATCCCAAGCATGAG
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               51     -    101
UN09699        --> ACCACCACCGTGTGATGATTTCAGGAGACTTCACCATCAGTGCGTAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> ACCACCACCGTGTGATGATTTCAGGAGACTTCACCATCAGTGCGTAGAAG
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               101    -    151
UN09699        --> CAAACGGTCATCAGCTAGCTCTTCTCTACGTTGCTCTCTACACCATAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> CAAACGGTCATCAGCTAGCTCTTCTCTACGTTGCTCTCTACACCATAGCT
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               151    -    201
UN09699        --> CTAGGCGGAGGAGGAATCAAATCCAACGTATCCGGTTTCGGGTCCGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> CTAGGCGGAGGAGGAATCAAATCCAACGTATCCGGTTTCGGGTCCGACCA
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               201    -    251
UN09699        --> GTTCGACACGAGTGATCCTAAAGAAGAGAAGCAGATGATTTTCTTCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> GTTCGACACGAGTGATCCTAAAGAAGAGAAGCAGATGATTTTCTTCTTCA
FY449396       --> .............GATCCTAAAGAAGAGAAGCAGATGATTTTCTTCTTCA
FD948348       --> ..................................................
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               251    -    301
UN09699        --> ACAGATTCTACTTCTCCATCAGCCTGGGATCTCTCTTCGCCGTGATTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> ACAGATTCTACTTCTCCATCAGCCTGGGATCTCTCTTCGCCGTGATTCTG
FY449396       --> ACAGATTCTACTTCTCCATCAGCCTGGGATCTCTCTTCGCCGTGATTCTG
FD948348       --> ..................................................
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               301    -    351
UN09699        --> CTATGCGGGACGAAACTGTACCGTTTCAAGAAACCTAAAGGGAGCCCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> CTATGCGGGACGAAACTGTACCGTTTCAAGAAACCTAAAGGGAGCCCTTT
FY449396       --> CTATGCGGGACGAAACTGTACCGTTTCAAGAAACCTAAAGGGAGCCCTTT
FD948348       --> ...................................gAAAGGGAGCCCTTT
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               351    -    401
UN09699        --> CACTGTTATATGGAGGGTTTGTTTCTTGGCGTGGAAGAAAAGAAACGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> CACTGTTATATGGAGGGTTTGTTTCTTGGCGTGGAAGAAAAGAAACGAGA
FY449396       --> CACTGTTATATGGAGGGTTTGTTTCTTGGCGTGGAAGAAAAGAAACGAGA
FD948348       --> CACTGTTATATGGAGGGTTTGTTTCTTGGCGTGGAAGAAAAGAAACGA-A
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               401    -    451
UN09699        --> GTTACCCTTCGCATAAGAGTCTTTTAAACGGTTATGACAACACGACGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> GTTACCCTTCGCATAAGAGTCTTTTAAACGGTTATGACAACACGACGGTT
FY449396       --> GTTACCCTTCGCATAAGAGTCTTTTAAACGGTTATGACAACACGACGGTT
FD948348       --> GCTACCCTTCGCATAAGAGTCTTTTAAACGGTTATGACAACACGACGGTT
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               451    -    501
UN09699        --> CCTCACACTGAGAGGCTAAAGTGTTTAGACAAAGCCGCGGTTGTCGTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> CCTCACACTGAGAGGCTAAAGTGTTTAGACAAAGCCGCGGTTGTCGTCGT
FY449396       --> CCTCACACTGAGAGGCTAAAGTGTTTAGACAAAGCCGCGGTTGTCGTCGT
FD948348       --> CCTCACACTGAGAGGCTAAAGTGTTTAGACAAAGCCGCGGTTGTCGTCGC
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               501    -    551
UN09699        --> AGAAGAGAGCTCTCCTAG---TACTAAGGAGTATAAAGAGAAGGATCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> AGAAGAGAGCTCTCCTAG---TACTAAGGAGTATAAAGAGAAGGATCCGT
FY449396       --> AGAAGAGAGCTCTCCTAG---TACTAAGGAGTATAAAGAGAAGGATCCGT
FD948348       --> AGAAGAGAGCTCTCCTAGCACCACTAAGGAGTTTAAAGAGAAGGATCCGT
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               551    -    601
UN09699        --> GGATGGTATCGACCGTCACACAGGTCGAAGAAGTGAAACTTGTTGTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> GGATGGTATCGACCGTCACACAGGTCGAAGAAGTGAAACTTGTTGTGAAA
FY449396       --> GGATGGTATCGACCGTCACACAGGTCGAAGAAGTGAAACTTGTTGTGAAA
FD948348       --> GGATGGTATCGACCGTTACACAGGTCGAAGAAGTGAAACGTGTCGTGAAA
FD938442       --> ..................................................
FY437418       --> ..................................................
EX890308       --> ..................................................

               601    -    651
UN09699        --> CTGATTCCCATTTGGGCAACAAACATTCTCTTCTGGACGATTTACTCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ..................................................
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> CTGATTCCCATTTGGGCAACAAACATTCTCTTCTGGACGATTTACTCCCA
FY449396       --> CTGATTCCCATTTGGGCAACAAACATTCTCTTCTGGACGATTTACTCCCA
FD948348       --> CTGATTCCCATTTGGGCAACAAACATTCTCTTCTGGACGATTTACTCCCA
FD938442       --> ....................................gCGATTTACTCCCA
FY437418       --> ..................................................
EX890308       --> ..................................................

               651    -    701
UN09699        --> GATGACGACTTTCACGGTGGAACAAGCCACGTTCATGGAGCGTAAACTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ............CACGGTGGAACAAGCCACGTTCATGGAGCGTAAACTCG
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> GATGACGACTTTCACGGTGGAACAAGCCACGTTCATGGAGCGTAAACTCG
FY449396       --> GATGACGACTTTCACGGTGGAACAAGCCACGTTCATGGAGCGTAAACTCG
FD948348       --> GATGACGACTTTCACGGTGGAACAAGCCACGTTCATGGAGCGTAAACTCG
FD938442       --> GATGACGACTTTCACGGTGGAACAAGCCACGTTCATGGAGCGTAAACTCG
FY437418       --> ..................................................
EX890308       --> ..................................................

               701    -    751
UN09699        --> GGTCTTTCACGGTTCCCGCGGGGTCCTACTCCGCGTTTCTAATCCTCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- GGTCTTTCACGGTTCCCGCGGGGTCCTACTCCGCGTTTCTAATCCTCACC
FD934812       <-- ..................................................
FD944151       <-- ..................................................
FD546289       <-- ..................................................
EX893853       <-- ..................................................
FY438575       --> GGTCTTTCACGGTTCCCGCGGGGTCCTACTCCGCGTTTCTAATCCTCACC
FY449396       --> GGTCTTTCACGGTTCCCGCGGGGTCCTACTCCGCGTTTCTAATCCTCACC
FD948348       --> GGTCTTTCACGGTTCCCGCGGGGTCCTACTCCGCGTTTCTAATCCTCACC
FD938442       --> GGTCTTTCACGGTTCCCGCGGGGTCCTACTCCGCGTTTCTAATCCTCACC
FY437418       --> ..................................................
EX890308       --> ..................................................

               751    -    801
UN09699        --> ATTCTCCTCTTCACTTCCCTTAACGAGAGAGTCTTTGTGCCTTTAGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ATTCTCCTCTTCACTTCCCTTAACGAGAGAGTCTTTGTGCCTTTAGCAAG  Raphanus sativus cv GSK3-1
FD934812       <-- ............................................AGCAAG  Raphanus sativus var. oleiformis
FD944151       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD546289       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893853       <-- ..................................................  Raphanus sativus var. oleiformis
FY438575       --> ATTCTCCTCTTCACTTCCCTTAACGAGAGAGTCTTTGTGCCTTTAGCAAG  Raphanus sativus cv GSK3-1
FY449396       --> ATTCTCCTCTTCACTTCCCTTAACGAGAGAGTCTTTGTGCCTTTAGCAAG  Raphanus sativus cv GSK3-1
FD948348       --> ATTCTCCTCTTCACTTCCCTTAACGAGAGAGTCTTTGTGCCTTTAGCAAG  Raphanus sativus cv Early Scarlet Globe
FD938442       --> ATTCTCCTCTTCACTTCCCTTAACGAGAGAGTCTTTGTGCCTTTAGCAAG  Raphanus sativus var. oleiformis
FY437418       --> ................................................ca  Raphanus sativus cv GSK3-1
EX890308       --> ..................................................  Raphanus sativus var. oleiformis

               801    -    851
UN09699        --> GAAGGTCACAAAGAAACCTCAAGGAATCACCAGCCTTCAGAGAATCGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- GAAGGTCACAAAGAAACCTCAAGGAATCACCAGCCTTCAGAGAATCGGAG  Raphanus sativus cv GSK3-1
FD934812       <-- AAAGGTCACAAAGAAACCTCAAGGGATCACCAGCCTTCAGAGAATCGGAG  Raphanus sativus var. oleiformis
FD944151       <-- .........................................GAATCGGAG  Raphanus sativus cv Early Scarlet Globe
FD546289       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893853       <-- ..................................................  Raphanus sativus var. oleiformis
FY438575       --> GAAGGTCACAAAGAAACCTCAAGGAATCACCAGCCTTCAGAGAATCGGAG  Raphanus sativus cv GSK3-1
FY449396       --> GAAGGTCACAAAGAAACCTCAAGGAATCACCAGCCTTCAGAGAATCGGAG  Raphanus sativus cv GSK3-1
FD948348       --> AAAGGTCACAAAGAAACCTCAAGGGATCACCAGCCTTCAGAGAATCGGAG  Raphanus sativus cv Early Scarlet Globe
FD938442       --> AAAGGTCACAAAGAAACCTCAAGGGATCACCAGCCTTCAGAGAATCGGAG  Raphanus sativus var. oleiformis
FY437418       --> ggAGGTCACAA-GAAACCTCAAGGAATCACCAGCCTTCAGAGAATCGGAG  Raphanus sativus cv GSK3-1
EX890308       --> ..................................................  Raphanus sativus var. oleiformis

               851    -    901
UN09699        --> TAGGGCTTGTGTTGTCAATGGGTGCAATGGCGGTGGCAGCGGTTATAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- TAGGGCTTGTGTTGTCAATGGGTGCAATGGCGGTGGCAGCGGTTATAGAG
FD934812       <-- TAGGGCTTGTGTTGTCAATGGGTGCAATGGCGGTGGCAGCGGTTATAGAT
FD944151       <-- TAGGGCTTGTGTTGTCAATGGGTGCAATGGCGGTGGCAGCGGTTATAGAG
FD546289       <-- ......................TGCAATGGCGGTGGCAGCGGTTATAGAG
EX893853       <-- ............................................gTAGAG
FY438575       --> TAGGGCTTGTGTTGTCAATGGGTGCAA.......................
FY449396       --> TAGGGCTTGTGTTGTCAATGGGTGCAATGGCGGTGGCAGCGGTTATAGAG
FD948348       --> TAGGGCTTGTGTTGTCAATGGGTGCAATGGCGGTGGCAGCGGTTATAGAG
FD938442       --> TAGGGCTTGTGTTGTCAATGGGTGCAATGGCGGTGGCAGCGGTTATAGAT
FY437418       --> TAGGGCTTGTGTTGTCAATGGGTGCAATGGCGGTGGCAGCGGTTATAGAG
EX890308       --> ............................................gTAGAG

               901    -    951
UN09699        --> AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT
FD934812       <-- AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT
FD944151       <-- AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT
FD546289       <-- AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT
EX893853       <-- AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT
FY438575       --> ..................................................
FY449396       --> AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT
FD948348       --> AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT
FD938442       --> AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT
FY437418       --> AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT
EX890308       --> AACGCTAGACGCGAGGCAGAAGTTACCAACGGTTATAAGATAAGCGCGTT

               951    -   1001
UN09699        --> CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTGCTT
FD934812       <-- CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTGCTT
FD944151       <-- CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTGCTT
FD546289       <-- CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTACTT
EX893853       <-- CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTGCTT
FY438575       --> ..................................................
FY449396       --> CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTGCTT
FD948348       --> CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTGCTT
FD938442       --> CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTGCTT
FY437418       --> CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTGCTT
EX890308       --> CTGGTTGATCCCACAGTATTTCTTGGTCGGTGCGGGTGAAGCGTTTGCTT

               1001   -   1051
UN09699        --> ACGTTGGACAGCTTGAGTTCTTTATAAGAGAAGCACCGGAGAGGATGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ACGTTGGACAGCTTGAGTTCTTTATAAGAGAAGCACCGGAGAGGATGAAG  Raphanus sativus cv GSK3-1
FD934812       <-- ACGTTGGACAGCTTGAGTTCTTTATAAGGGAAGCACCGGAGAGGATGAAG  Raphanus sativus var. oleiformis
FD944151       <-- ACGTTGGACAGCTTGAGTTCTTTATAAGAGAAGCACCGGAGAGGATGAAG  Raphanus sativus cv Early Scarlet Globe
FD546289       <-- ACGTTGGACAGCTTGAGTTCTTTATAAGAGAAGCACCGGAGAGGATGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893853       <-- ACTTTGGACAGCTTGAGTTCTTTATAAGGGAAGCACCGGAGAGGATGAAG  Raphanus sativus var. oleiformis
FY438575       --> ..................................................  Raphanus sativus cv GSK3-1
FY449396       --> ACGTTGGACAGCTTGAGTTCTTTA..........................  Raphanus sativus cv GSK3-1
FD948348       --> ACGTTGGACAGCTTGAGTTCTTTATAAGAGAAGCA...............  Raphanus sativus cv Early Scarlet Globe
FD938442       --> ACGTTGGACAGCTTGAGTTCTTTATAAGGGAAGCACCGGAGAGGATGAAG  Raphanus sativus var. oleiformis
FY437418       --> ACGTTGGACAGCTTGAGTTCTTTATAAGAGAAGCACCGGAGAGGATGAAG  Raphanus sativus cv GSK3-1
EX890308       --> ACTTTGGACAGCTTGAGTTCTTTATAAGGGAAGCACCGGAGAGGATGAAG  Raphanus sativus var. oleiformis

               1051   -   1101
UN09699        --> TCGATGAGCACCGGGTTGTTCTTGAGCACGATTTCGATGGGATTCTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- TCGATGAGCACCGGGTTGTTCTTGAGCACGATTTCGATGGGATTCTTTGT
FD934812       <-- TCTATGAGCACCGGGTTGTTCTTGAGCACGATTTCGATGGGATTCTTTGT
FD944151       <-- TCGATGAGCACCGGGTTGTTCTTGAGCACGATTTCGATGGGATTCTTTGT
FD546289       <-- TCGATGAGCACCGGGTTGTTCTTGAGCACGATTTCGATGGGATTCTTTGT
EX893853       <-- TCGATTAGCACCGGGTTGTTCTTGAGCACGATTTCGATGGGATTCTTTGT
FY438575       --> ..................................................
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> TCTATGAGCACCGGGTTGTTCTTGAGCACGATTTCGATGGGATTCTTTGT
FY437418       --> TCGATGAGCACCGGGTTGTTCTTGAGCACGATTTCGATGGGATTCTTTGT
EX890308       --> TCGATTAGCACCGGGTTGTTCTTGAGCACGATTTCGATGGGATTCTTTGT

               1101   -   1151
UN09699        --> GAGCAGCTTGCTTGTTTCTCTTGTTGATAAGGTTACGCACAAGAGCTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- GAGCAGCTTGCTTGTTTCTCTTGTTGATAAGGTTACGCACAAGAGCTGGC
FD934812       <-- GAGCAGCTTGCTTGTTTCTCTTGTTGATAAGGTTA-GCACAAGAGCTGGC
FD944151       <-- GAGCAGCTTGCTTGTTTCTCTTGTTGATAAGGTTACGCACAAGAGCTGGC
FD546289       <-- GAGCAGCTTGCTTGTTTCTCTTGTTGATAAGGTTACGCACAAGAGCTGGC
EX893853       <-- GAGCAGCTTGCTTGTTTCTCTTGTTGATAAGGTTACGCACAAGAGCTGGC
FY438575       --> ..................................................
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> GAGCAGCTTGCTTGTTTCTCTTGTTGATAAGGTTA-GCACAAGAGCTGGC
FY437418       --> GAGCAGCTTGCTTGTTTCTCTTGTTGATAAGGTTACGCACAAGAGCTGGC
EX890308       --> GAGCAGCTTGCTTGTTTCTCTTGTTGATAAGGTTACGCACAAGAGCTGGC

               1151   -   1201
UN09699        --> TTAGAAGCAACCTTAACAAAGCGAGATTGAACTACTTCTACTGGTTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- TTAGAAGCAACCTTAACAAAGCGAGATTGAACTACTTCTACTGGTTGCTT
FD934812       <-- TTAGAAGCAACCTTAACAAAGCGAGATTGAACTACTTCTACTGGTTGCTT
FD944151       <-- TTAGAAGCAACCTTAACAAAGCGAGATTGAACTACTTCTACTGGTTGCTT
FD546289       <-- TTAGAAGCAACCTTAACAAAGCGAGATTGAACTACTTCTACTGGTTGCTT
EX893853       <-- TTAGAAGCAACCTTAACAAAGCGAGATTGAACTACTTCTACTGGTTGCTT
FY438575       --> ..................................................
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> TTAGAAGCAACCTTAACAAAGCGAGATTGAACTACTTCTACTGGTTGCTT
FY437418       --> TTAGAAGCAACCTTAACAAAGCGAGATTGAACTACTTCTACTGGTTGCTT
EX890308       --> TTAGAAGCAACCTTAACAAAGCGAGATTGAACTACTTCTACTGGTTGCTT

               1201   -   1251
UN09699        --> GTTGTCTTGGGAGCTTTTAACTTCTTGGTTTTTATAGTGTTTGCGATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- GTTGTCTTGGGAGCTTTTAACTTCTTGGTTTTTATAGTGTTTGCGATGAG
FD934812       <-- GTTGTCTTGGGAGCTTTTAACTTCTTGGTTTTTATAGTGTTTGCGATGAG
FD944151       <-- GTTGTCTTGGGAGCTTTTAACTTCTTGGTTTTTATAGTGTTTGCGATGAG
FD546289       <-- GTTGTCTTGGGAGCTTTTAACTTCTTGGTTTTTATAGTGTTTGCGATGAG
EX893853       <-- GTTGTCTTGGGAGCTTTTAACTTCTTGGTTTTTATAGTGTTTGCGATGAG
FY438575       --> ..................................................
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> GTTGTCTTGGGAGCTTTTAACTTCTTGGTTTTTATAGTGTTTGCGATGAG
FY437418       --> GTTGTCTTGGGAGCTTTTAACTTCTTGGTTTTTATAGTGTTTGCGATGAG
EX890308       --> GTTGTCTTGGGAGCTTTTAACTTCTTGGTTTTTATAGTGTTTGCGATGAG

               1251   -   1301
UN09699        --> GCATCAGTATAAAGCTGATATGATTAGTGTTGGGGTTGATGATTCACAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- GCATCAGTATAAAGCTGATATGATTAGTGTTGGGGTTGATGATTCACAGG
FD934812       <-- GCATCAGTATAAAGCTGATATGATTAGTGTTGGGGTTGATGATTCACAGG
FD944151       <-- GCATCAGTATAAAGCTGATATGATTAGTGTTGGGGTTGATGATTCACAGG
FD546289       <-- GCATCAGTATAAAGCTGATATGATTAGTGTTGGGGTTGATGATTCACAGG
EX893853       <-- GCATCAGTATAAAGCTGATATGATTAGTGTTGGGGTTGATGATTCACAGG
FY438575       --> ..................................................
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> GCATCAGTATAAAGCTGATATGATTAGTGTTGGGGTTGATGATTCA....
FY437418       --> GCATCAGTATAAAGCTGATATGATTAGTGTTGGGGTTGATGATTCACAGG
EX890308       --> GCATCAGTATAAAGCTGATATGATTAGTGTTGGGGTTGATGATTCACAGG

               1301   -   1351
UN09699        --> AGAAGGAGAAGGATAACGAGAAAGACAAATCTGAGCTTGAGCTTAAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- AGAAGGAGAAGGATAACGAGAAAGACAAATCTGAGCTTGAGCTTAAAGAC
FD934812       <-- AGAAGGAGAAGGATAACGAGAAAGACGAATCTGAGCTTGAGCTTAAAGAC
FD944151       <-- AGAAGGAGAAGGATAACGAGAAAGACAAATCTGAGCTTGAGCTTAAAGAC
FD546289       <-- AGAAGGAGAAGGATAACGAGAAAGACAAATCTGAGCTTGAGCTTAAAGAC
EX893853       <-- AGAAGGAGAAGGATAACGAGAAAGACAAATTTGAGCTTGAGCTTAAAGAC
FY438575       --> ..................................................
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> ..................................................
FY437418       --> AGAAGGAGAAGGATAACGAGAAAGACAAATCTGAGCTTGAGCTTAAAGAC
EX890308       --> AGAAGGAGAAGGATAACGAGAAAGACAAATCTGAGCTTGAGCTTAAAGAC

               1351   -   1401
UN09699        --> ATTCCATAAAACCAGAGATTTGTCTTGGATCTTTCTTCCCACTTGCTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- ATTCCATAAAACCAGAGATTTGTCTTGGATCTTTCTTCCCACTTGCTTGT
FD934812       <-- ATTCCATAAAACCAGAGATTTGTCTTGGATCTTTCTTCCCACTTGCTTGT
FD944151       <-- ATTCCATAAAACCAGAGATTTGTCTTGGATCTTTCTTCCCACTTGCTTGT
FD546289       <-- ATTCCATAAAACCAGAGATTTGTCTTGGATCTTTCTTCCCACTTGCTTGT
EX893853       <-- ATTCCATAAAACCAGAGATTTGTCTTGGATCTTTCTTCCCACTTGCTTGT
FY438575       --> ..................................................
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> ..................................................
FY437418       --> ATTCCATAAAACCAGAGATTTGTCTTGGATCTTTCTTCCCACTTGCTTGT
EX890308       --> ATTCCATAAAACCAGAGATTTGTCTTGGATCTTTCTTCCCACTTGCTTGT

               1401   -   1451
UN09699        --> TGTTGCTTTGAAGATTTTCATTTTTTTTTTGTATTTTTAAAACTATAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- TGTTGCTTTGAAGATTTTCATTTTTTTTTTGTATTTTTAAAACTATAATG  Raphanus sativus cv GSK3-1
FD934812       <-- TGTTGCTTTGAAGATTTTCATTTTTTTT-GGTATTTTTAAAACTATAATG  Raphanus sativus var. oleiformis
FD944151       <-- TGTTGCTTTGAAGATTTTCATTTTTTTTTTGTATTTTTAAAACTATAATG  Raphanus sativus cv Early Scarlet Globe
FD546289       <-- TGTTGCTTTGAAGATTTTCATTTTTTTTT-GTATTTTTAAAACTATAATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893853       <-- TGTTGCTTTGAAGATTTTCATTTTTTTTTGGTATTTTTAAAACTATAATG  Raphanus sativus var. oleiformis
FY438575       --> ..................................................  Raphanus sativus cv GSK3-1
FY449396       --> ..................................................  Raphanus sativus cv GSK3-1
FD948348       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD938442       --> ..................................................  Raphanus sativus var. oleiformis
FY437418       --> TGTTGCTTTGAAGATTTTCATTTTTTTTTTGTATTTTTAAAACTATAATG  Raphanus sativus cv GSK3-1
EX890308       --> TGTTGCTTTGAAGATTTTCATTTTTTTTTGGTATTTTTAAAACTATAATG  Raphanus sativus var. oleiformis

               1451   -   1501
UN09699        --> TGTGTATGAAATACAAGCATTTCTACATATAGTTTGGATTGTAATTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- TGTGTATGAAATACAAGCATTTCTACATATAGTTTGGATTGTAATTTTGT
FD934812       <-- TGTGTATGAAATACAAGCATTTCTACATATAGTTTGGATTGTAATTTTGT
FD944151       <-- TGTGTATGAAATACAAGCATTTCTAC........................
FD546289       <-- TGTGTATGAAATACAAGCATTTCTACATATAGTTTGGATTGTAATTTTGT
EX893853       <-- TGTGTATGAAATACAAGCATTTCTACATATAGTTTGGATTATAATTTTGT
FY438575       --> ..................................................
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> ..................................................
FY437418       --> TGTGTATGAAATACAAGCATTTCTACATATAGTTTGGATTGTAtttcata
EX890308       --> TGTGTATGAAATACAAGCATTTCTACATATAGTTTGGATTATAATTTTGT

               1501   -   1551
UN09699        --> AAAATTTGAAAACATTTGTTATTACTATTTAATGGTAGCTTTTCTTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434279       <-- AAAATT-GAAAACATTgtatac............................
FD934812       <-- AAAATTTGAAAACATTTGTTATTACTATTTAATGGTAGCTTTTCTTTTGC
FD944151       <-- ..................................................
FD546289       <-- AAAATTTGAAAACATTTGTTATTACTATTTAATGGTAGCTTTTCTTTTGC
EX893853       <-- AAAATTTGAAAACATTTGTTATTACTATTTAATGGTAG............
FY438575       --> ..................................................
FY449396       --> ..................................................
FD948348       --> ..................................................
FD938442       --> ..................................................
FY437418       --> cacacattatagttgc..................................
EX890308       --> AAAATTTGAAAACATTTGTTATTACTATTTAATGGTAG............

               1551   -   1601
UN09699        --> ATC
                   ~~~
FY434279       <-- ...
FD934812       <-- ATC
FD944151       <-- ...
FD546289       <-- ATC
EX893853       <-- ...
FY438575       --> ...
FY449396       --> ...
FD948348       --> ...
FD938442       --> ...
FY437418       --> ...
EX890308       --> ...