1      -     51
UN09701        --> AATCAAAACCCATAGTATATTCATATTATTAAGTGGCAGCGATGATTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524561       <-- AATCAAAACCCAT----AGTTCATATTATTAAGTGGCAGCGATGATTACA  Raphanus raphanistrum subsp. maritimus
EV548400       <-- AATCAAAACCCATAGTATATTCATATTATTAAGTGGCAGCGATGATTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549153       <-- AATCAAAACCCATAGTATATTCATATTATTAAGTGGCAGCGATGATTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922181       <-- AATCAAAACCCAT----AGTTCATATTATTAAGTGGCAGCGATGATTACA  Raphanus raphanistrum subsp. landra
FD542843       <-- AATCAAAACCCATAGTATATTAATATTATTAAGTGGCAGCGATGATTACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750180       <-- gATCAAAACCCAT----AGTTCATATTATTAAGTGGCAGCGATGATTACA  Raphanus raphanistrum subsp. maritimus
EW723470       <-- .......caaaacccatagTTCATATTATTAAGTGGCAGCGATGATTACA  Raphanus sativus cv Early Scarlet Globe
EV544076       --> AATCAAAACCCATAGTATATTCATATTATTAAGTGGCAGCGATGATTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544683       --> AATCAAAACCCATAGTATATTCATATTATTAAGTGGCAGCGATGATTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538808       --> AATCAAAACCCATAGTATATTAATATTATTAAGTGGCAGCGATGATTACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753712       --> gATCAAAACCCATAGT----TCATATTATTAAGTGGCAGCGATGATTACA  Raphanus raphanistrum subsp. maritimus
EV533077       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV529532       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN09701        --> AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524561       <-- AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAC  Raphanus raphanistrum subsp. maritimus
EV548400       <-- AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549153       <-- AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922181       <-- AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAC  Raphanus raphanistrum subsp. landra
FD542843       <-- AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750180       <-- AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAC  Raphanus raphanistrum subsp. maritimus
EW723470       <-- AATATGATGAAGTCTGACTAGTAATAAAGAAAATTACAATGACACAATAC  Raphanus sativus cv Early Scarlet Globe
EV544076       --> AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544683       --> AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538808       --> AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753712       --> AATATGATGAAGTCTGACTAGTAATAAAGAAA-TTACAATGACACAATAC  Raphanus raphanistrum subsp. maritimus
EV533077       --> .....................................AATGACACAATAC  Raphanus raphanistrum subsp. maritimus
EV529532       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN09701        --> CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524561       <-- CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
EV548400       <-- CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
EV549153       <-- CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
EY922181       <-- CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
FD542843       <-- CATTACGGGGAATTGCTCAAAGGATTATAAAGTAACTAATCATTTAAGGA
EX750180       <-- CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
EW723470       <-- CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
EV544076       --> CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
EV544683       --> CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
FD538808       --> CATTACGGGGAATTGCTCAAAGGATTATAAAGTAACTAATCATTTAAGGA
EX753712       --> CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
EV533077       --> CATTACGGGGAATTGCTCAAAAGATTATAAAGTAACTAATCATTTAAGGA
EV529532       --> .................................AACTAATCATTTAAGGA

               151    -    201
UN09701        --> TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524561       <-- TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGCG
EV548400       <-- TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTCCTGCG
EV549153       <-- TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGCG
EY922181       <-- TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGAG
FD542843       <-- TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGTG
EX750180       <-- TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGCG
EW723470       <-- TTGTGGTTTTGGGTATAGATGTAACCAGTGTGAGCAACTAAAGTTCTGCG
EV544076       --> TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTCCTGCG
EV544683       --> TTGGGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGCG
FD538808       --> TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGTG
EX753712       --> TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGCG
EV533077       --> TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGCG
EV529532       --> TTGTGGTTTTGGGTATAGATGTAATCAGTGTGAGCAACTAAAGTTCTGCG

               201    -    251
UN09701        --> TATCAAGGCACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524561       <-- TATCAAGGCACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. maritimus
EV548400       <-- TATCAAGACACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549153       <-- TATCAAGACACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922181       <-- TATCAAGGCACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. landra
FD542843       <-- TATCAAGACACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750180       <-- TATCAAGGCACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. maritimus
EW723470       <-- TATCAAGGCACACTCTTCTTCTCCAACACCTTCACAGTTTA-----CCTC  Raphanus sativus cv Early Scarlet Globe
EV544076       --> TATCAAGACACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544683       --> TATCAAGACACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538808       --> TATCAAGACACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753712       --> TATCAAGGCACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. maritimus
EV533077       --> TATCAAGGCACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. maritimus
EV529532       --> TATCAAGGCACACTCTTCTTCTCCAACACCTTCACAGTTTACCTCTTCTT  Raphanus raphanistrum subsp. maritimus

               251    -    301
UN09701        --> GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTTGAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524561       <-- GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTTGAAATG
EV548400       <-- GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTTGAAATG
EV549153       <-- GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTT-AAATG
EY922181       <-- GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTTGAAATG
FD542843       <-- GTTCTAGTTTCTCAACGGAGATTTCTTCTGCATCAACGGAGGTTGAAATG
EX750180       <-- GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTTGAAATG
EW723470       <-- GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTTGAAATG
EV544076       --> GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTTGAAATG
EV544683       --> GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTT-AAATG
FD538808       --> GTTCTAGTTTCTCAACGGAGATTTCTTCTGCATCAACGGAGGTTGAAATG
EX753712       --> GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTTGAAATG
EV533077       --> GTTCTAGTTTCTCAACGGAAATTTCTTCCGCATCAACGGAGGTTGAAATG
EV529532       --> GTTCTAGTTTCTCAACGGAGATTTCTTCCGCATCAACGGAGGTTGAAATG

               301    -    351
UN09701        --> GGCCGGGCTGATGCGTATGTTAGCGTGGAGCAGAGGAGGAGGGCAGCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524561       <-- GGCCGGGCTGATGCGTATGTTAGCGTGGAGCAGAGGAGGAGGGAAGCGAT  Raphanus raphanistrum subsp. maritimus
EV548400       <-- GGCCGGGCTGATGCGTATGTTAGCGTGGAGCAGAGGAGGAGGGCAGCGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549153       <-- GGCCGGGCTGATGCGTATGTTAGCGTGGAGCAGAGGAGGAGGGCAGCGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922181       <-- GGCCGGGCTGATGCGTATGTTAGCGTGGAGCAGAGGAGGAGGGAAGCGAT  Raphanus raphanistrum subsp. landra
FD542843       <-- GGCCGGGCTGATGCGTATGTTAGCGTGGAGCAGAGGAGGAGGGCAGCGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750180       <-- GGCCGGGCTGATGCGTATGTTAGCGTGGAACAGAGGAGGAGGGAAGCGAT  Raphanus raphanistrum subsp. maritimus
EW723470       <-- GGCCGGGCTGATGCGTATGTTAGCGTGG......................  Raphanus sativus cv Early Scarlet Globe
EV544076       --> GGCCGGGCTGATGCGTATGTTAGCGTGGAGCAGAGGAGGAGGGCAGCGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544683       --> GGCCGGGCTGATGCGTATGTTAGCGTGGAGCAGAGGAGGAGGGCAGCGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538808       --> GGCCGGGCTGATGCGTATGTTAGCGTGGAGCAGAGGAGGAGGGCAGCGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753712       --> GGCCGGGCTGATGCGTATGTTAGCGTGGAACAGAGGAGGAGGGAAGCGAT  Raphanus raphanistrum subsp. maritimus
EV533077       --> GGCCGGGCTGATGCGTATGTTATCGT........................  Raphanus raphanistrum subsp. maritimus
EV529532       --> GGCCGGGCTGATGCGTATGTTAGCGTGGAGCAGAGGAGGAGGGAAGCGAT  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN09701        --> GAAGAAGAAAGTTGTGAACTTCGCCATTTCTTTATCTGACTAAGTACTA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524561       <-- GAAGAAGAAAGTTGTGAACTTCGCCATTTATTTATCTGACTAAGTACTAT  Raphanus raphanistrum subsp. maritimus
EV548400       <-- GAAGAAGAAAGTTGTGAACTTCGCCATTTCTTTATCTGACTAAGTACTA-  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549153       <-- GAAGAAGAAAGTTGTGAACTTCGCCATTTCTTTATCTGACTAAGTACTA-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922181       <-- GAAGAAGAAAGTTGTGAACTTCGCCATTTCTTTATCTGACTAAGTACTAT  Raphanus raphanistrum subsp. landra
FD542843       <-- GAAGAAGAAAGTTGTGAACTTCGCCATTTCTTTATCTGACTAAGTACTA-  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750180       <-- GAAGAAGAAAGTTGTGAACTTCGCCATTTCTTTATCTGACTAAGTGCTAT  Raphanus raphanistrum subsp. maritimus
EW723470       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV544076       --> GAAGAAGAAAGTTGTGAACTTCGCCATTTCTTTATCTGACTAAGTACTA-  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544683       --> GAAGAAGAAAGTTGTGAACTTCGCCATTTCTTTATCTGACTAAGTACTA-  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538808       --> GAAGAAGAAAGTTGTGAACTTCGCCATTTCTTTATCTGACTAAGTACTA-  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753712       --> GAAGAAGAAAGTTGTGAACTTCGCCATTTCTTTATCTGACTAAGTGCTAT  Raphanus raphanistrum subsp. maritimus
EV533077       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV529532       --> GAAGAAGAAAGTTGTGAACTTCGCCATTTATTTATCTGACTAAGTACTAT  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN09701        --> -CACAATCTTGTTATTATCGAGTATATATTGATTTAAAGTGAGGAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524561       <-- ACACAATCTTGTTATTATTGAGTATATATTGATTTAAAGTGAGGAGGAAG  Raphanus raphanistrum subsp. maritimus
EV548400       <-- -CACAATCTTGTTATTATCGAGTATATATTGATT................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549153       <-- -CACAATCTTGTTATTATCGAGTATATATTGATTTTAAGTGAGGAGGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922181       <-- ACACAATCTTGTTATTATTGAGTATATATTGATTTAAAGTGAGGAGGAAG  Raphanus raphanistrum subsp. landra
FD542843       <-- -CACAATCTTGTTATTATCGAGTATATAT.....................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750180       <-- ACACAATCTTGTTATTATTGAGTATATATTGATTTAAAGTGATGAGGAAG  Raphanus raphanistrum subsp. maritimus
EW723470       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV544076       --> -CACAATCTTGTTATTATCGAGTATATATTGATT................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544683       --> -CACAATCTTGTTATTATCGAGTATATATTGATTTTAAGTGAGGAGGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538808       --> -CACAATCTTGTTATTATCGAGTATATAT.....................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753712       --> ACACAATCTTGTTATTATTGAGTATATATTGATTTAAAGTGATGAGGAAG  Raphanus raphanistrum subsp. maritimus
EV533077       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV529532       --> ACACAATCTTGTTATTATTGAGTATATATTGATTTAAAGTGAGGAGGAAG  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN09701        --> ATATATCC
                   ~~~~~~~~
EV524561       <-- ATATATCC
EV548400       <-- ........
EV549153       <-- ATATATCC
EY922181       <-- ATATATCC
FD542843       <-- ........
EX750180       <-- ATGTATCC
EW723470       <-- ........
EV544076       --> ........
EV544683       --> ATATATCC
FD538808       --> ........
EX753712       --> ATGTATCC
EV533077       --> ........
EV529532       --> ATATATCC