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Alignment for radish unigene UN09717

               1      -     51
UN09717        --> ACTAGAAGCAATACTCAACTTTTGTTTACAATATCTTTATAGTTTATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- .....................TTGTTTACAATATCTTTATAGTTTATACA
FD946681       <-- .....................TTGTTTACAATATCTTTATAGTTTATACA
EY921707       <-- .........................................tgacttctc
EV524657       <-- ..................................................
FD946021       <-- ..................................................
EV545316       --> ACTAGAAGCAATACTCAACTTTTGTTTACAATATCTTTATAGTTTATACA
FD942218       --> ...AGAAGCAATACTCAACTTTTGTTTACAATATCTTTATAGTTTATACA
FD539458       --> ............ACTCAACTTTTGTTTACAATATCTTTATAGTTTATACA
FD942758       --> ...................TTTTGTTTACAATATCTTTATAGTTTATACA
EV529601       --> .......................GTTTACAATATCTTTATAGTTTATACA

               51     -    101
UN09717        --> CACGATTAATACATAATACCACACCACACAGCTTACTTAAGCAAACAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- CACGATTAATACATAATACCACACCACACAGCTTACTTAAGCAAACAACA
FD946681       <-- CACGATTAATACATAATACCACACCACACAGCTTACTTAAGCAAACAACA
EY921707       <-- aaataatatatagagATACCACACCACACAGCTTACTTAAGCAAACAACA
EV524657       <-- .................................TACTTAAGCAAACAACA
FD946021       <-- ..................................................
EV545316       --> CACGATTAATACATAATACCACACCACACAGCTTACTTAAGCAAACAACA
FD942218       --> CACGATTAATACATAATACCACACCACACAGCTTACTTAAGCAAACAACA
FD539458       --> CACGATTAATACATAATACCACACCACACAGCTTACTTAAGCAAACAACA
FD942758       --> CCCGATTAATACATAATACCACACCACACAGCTTACTTAAGCAAACAACA
EV529601       --> CACGATTAATACATAATACCACACCACACAGCTTACTTAAGCAAACAACA

               101    -    151
UN09717        --> TATTTACACAAAATCATCTTCCATAAGCAAAAAAAAAAAA---TCTAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- TATTTACACAAAATCATCTTCCATAAGCAAAAAAAAAAAT---TCTAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946681       <-- TATTTACACAAAATCATCTTCCATAAGCAAAAAAAAAAAA--ATCTAGAA  Raphanus sativus cv Early Scarlet Globe
EY921707       <-- TATTTACACAAAATCATCTTCCATAAGCAAAAAAAAA--A---TCTAGAA  Raphanus raphanistrum subsp. landra
EV524657       <-- TATTTACACAAAATCATCTTCCATAAGCAAAAAAAAAAA----TCGAGAA  Raphanus raphanistrum subsp. maritimus
FD946021       <-- ..............CATCTTCCATAAGCAAAAAAAAAAAAAAATCTAGAA  Raphanus sativus cv Early Scarlet Globe
EV545316       --> TATTTACACAAAATCATCTTCCATAAGCAAAAAAAAAAAT---TCTAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD942218       --> TATTTACACAAAATCATCTTCCATAAGCAAAAAAAAAAAAAAATCTAGAA  Raphanus sativus cv Early Scarlet Globe
FD539458       --> TATTTACACAAAATCATCTTCCATAAGCAAAAAAAAAAA----TCTAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942758       --> TATTTACACAAAATCATCTTCCATAAGCAAAAAAAAAAAA-AATCTAAAA  Raphanus sativus cv Early Scarlet Globe
EV529601       --> TATTTACACAAAATCATCTTCCATAAGCAAAAAAAAAAA----TCGAGAA  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN09717        --> TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAAACTCGGTAAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAAACTCGGTAAATC
FD946681       <-- TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAA-CTCGGTAAATC
EY921707       <-- TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAAACTCGGTAAATC
EV524657       <-- TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAAACTCGGTAAATC
FD946021       <-- TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAAACTCGGTAAATC
EV545316       --> TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAAACTCGGTAAATC
FD942218       --> TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAAACTCGGTAAATC
FD539458       --> TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAAACTCGGTAAATC
FD942758       --> TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAA-CTCGGTAAATC
EV529601       --> TATAAGTTGAAAAACAAATTCTAACGAACAAAAAAAAAACTCGGTAAATC

               201    -    251
UN09717        --> AAGCCAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- AAGCCAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946681       <-- AAGCAAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG  Raphanus sativus cv Early Scarlet Globe
EY921707       <-- AAGCCAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG  Raphanus raphanistrum subsp. landra
EV524657       <-- AAGCCAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG  Raphanus raphanistrum subsp. maritimus
FD946021       <-- AAGCAAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG  Raphanus sativus cv Early Scarlet Globe
EV545316       --> AAGCCAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD942218       --> AAGCAAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG  Raphanus sativus cv Early Scarlet Globe
FD539458       --> AAGCCAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942758       --> AAGCAAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG  Raphanus sativus cv Early Scarlet Globe
EV529601       --> AAGCCAAGCCCCATGGTTTCCATAAATTACATTTTTAAAACAAATCATCG  Raphanus raphanistrum subsp. maritimus

               251    -    301
UN09717        --> AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG
FD946681       <-- AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG
EY921707       <-- AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG
EV524657       <-- AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG
FD946021       <-- AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG
EV545316       --> AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG
FD942218       --> AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG
FD539458       --> AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG
FD942758       --> AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG
EV529601       --> AACTGATGATTGTGGCGAACCTCACTCTATTCCTTGCCGTGTTTCCTAGG

               301    -    351
UN09717        --> TGAGAGCATGGAAACGTGGGAGCTCTTTAAAA-CATGCAGCCTCTTGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- TGAGAGCATGGAAACGTGGGAGCTCTTTAAAA-CATGCAGCCTCTTGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946681       <-- TGAGAGCATGGAAACGTGGGAGCTCTTTAAAAACATGCAGCCTCTTGACA  Raphanus sativus cv Early Scarlet Globe
EY921707       <-- TGAGAGCATGGAAACGTGGGAGCTCTTTAAAA-CATGCAGACTCTTGACA  Raphanus raphanistrum subsp. landra
EV524657       <-- TGAGAGCATGGAAACGTGGGAGCTCTTTAAAA-CATGCAGCCTCTTGACA  Raphanus raphanistrum subsp. maritimus
FD946021       <-- TGAGAGCATGGAAACGTGGGAGCTCTTTAAAAACATGCAGCCTCTTGACA  Raphanus sativus cv Early Scarlet Globe
EV545316       --> TGAGAGCATGGAAACGTGGGAGCTCTTTAAAA-CATGCAGCCTCTTGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD942218       --> TGAGAGCATGGAAACGTGGGAGCTCTTTAAAAACATGCAGCCTCTTGACA  Raphanus sativus cv Early Scarlet Globe
FD539458       --> TGAGAGCATGGAAACGTGGGAGCTCTTTAAAA-CATGCAGCCTCTTGACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942758       --> TGAGAGCATGGAAACGTGGGAGCTCTTTAAAAACATGCAGCCTCTTGACA  Raphanus sativus cv Early Scarlet Globe
EV529601       --> TGAGAGCATGGAAACGTGGGAGCTCTTTAAAA-CATGCAGCCTCTTGACA  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN09717        --> GTTGATACAAACATCTCCCAAGGAACATCTCCGACCAGAACTTTATCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- GTTGATACAAACATCTCCCAAGGAACATCTCCGACCAGAACTTTATCTCC
FD946681       <-- GTTGATACAAACATCTCCCAAGGAACATCTCCGACCAGAACTTTATCTAC
EY921707       <-- GTTGATACAAACATCTCCCAAGGAACATCTCCGACCAGAACTTTATCTCC
EV524657       <-- GTTGATACAAACATCTCCCAAGGAACATCTCCGACCAGAACTTTATCTCC
FD946021       <-- GTTGATACAAACATCTCCCAAGGAACATCTCCGACCAGAACTTTATCTCC
EV545316       --> GTTGATACAAACATCTCCCAAGGAACATCTCCGACCAGAACTTTATCTCC
FD942218       --> GTTGATACAAACATCTCCCAAGGAACATCTCCGACCAAAACTTTATCTCC
FD539458       --> GTTGGTACAAACATCTCCCAAGGAACATCTCCGACCAGAACTTTATCTCC
FD942758       --> GTTGATACAAACATCTCCCAAGGAACATCTCCGACCAAAACTTTATCTAC
EV529601       --> GTTGATACAAACATCTCCCAAGGAACATCTCCGACCAAAACTTTATCTCC

               401    -    451
UN09717        --> TTCAGTGTCTTCGTAGACCAAAGTGTATTGTCTGTTTAGATCCGACGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- TTCAGTGTCTTCGTAGACCAAAGTGTATTGTCTGTTTAGATCCGACGAAT
FD946681       <-- TTCAGTGTCTTCGTAGACCAAAGTGTATTGTCTGTTTAGATCCGACGAAT
EY921707       <-- TTCAGTGTCTTCGTAGACCAAAGTGTATTGTCTGTTTAGATCAGACGAAT
EV524657       <-- TTCAGTGTCTTCGTAGACCAAAGTGTATTGTCTGTTTAGATCCGACGAAT
FD946021       <-- TTCAGTGTCTTCGTAGACCAAAGTGTATTGTCTGTTTAGATCCGACGAAT
EV545316       --> TTCAGTGTCTTCGTAGACCAAAGTGTATTGTCTGTTTAGATCCGACGAAT
FD942218       --> TTCAGTGTCTTCGTAAACCAAAGTGTATTGTCTGTTTAGATCCGACGAAT
FD539458       --> TTCAGTGTCTTCGTAGACCAAAGTGTATTGTCTGTTTAAATCCGACGAAT
FD942758       --> TTCAGTGTCTTCGTAAACCAAAGTGTATTGTCTGTTTAGATCCGACAAAT
EV529601       --> TTCAGTGTCTTCGTAAACCAAAGTGTATTGTCTGTTTAGATCCGACGAAT

               451    -    501
UN09717        --> CTTTCTTAGAGAAGAGTTGGTCAACGGCATGTGAAAGCTGTTGGTAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- CTTTCTTAGAGAGGAGTTGGTCAACGGCATGTGAAAGCTGTTGGTAGTTG
FD946681       <-- CTTTCTTAGAGAAGAGTTGGTCAACGGCATGTGAAAGCTGTTGGTAGTTG
EY921707       <-- CTTTCTTAGAGAAGAGTTGGTCAACGGCATGTGAAAGCTGTTGGTAGTTG
EV524657       <-- CTTTCTTAGAGAAGAGTTGGTCAACGGCATGTGAAAGCTGTTGGTAGTTG
FD946021       <-- CTTTCTTAGAGAAGAGTTGATCAACGGCATGTGAAAGCTGTTGGTAGTTG
EV545316       --> CTTTCTTAGAGAGGAGTTGGTCAACGGCATGTGAAAGCTGTTGGTAGTTG
FD942218       --> CTTTCTTAAAGAAGAGTTGATCAACGGCATGTGAAAGCTGTTGGTAGTTG
FD539458       --> CTTTCTTAAAGAAGAGTTGGTCAACGGCATGTGAAAGCTGTTGGTAGTTG
FD942758       --> CTTTCTTAAAGAA.....................................
EV529601       --> CTTTCTTAAAGAAAAGTTGGTCAACGGCATGTGAAAGCTGTTGGTAGTTG

               501    -    551
UN09717        --> TTATAAGCCGAGAGGTTGACTTTTCTTCCGATGGGAACTCCTTCCATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- TTATAAGCCGAGAGGTTGACTTTTCTTCCGATGGGAACTCCTTCCATGTT
FD946681       <-- TTATAAGCCGAGAGGTTGACTTTTCTTCCGATGGGAACTCCTTCCATGTT
EY921707       <-- TTATAAGCCGAGAGGTTGACTTTTCTTCCGATGGGAACTCCTTCCATGTT
EV524657       <-- TTATAAGCCGAGAGGTTGACTTTTCTTCCGATGGGAACTCCTTCCATGTT
FD946021       <-- TTATAAGCCGAGAGGTTGACTTTTCTTCCGAT--GAACTCCTTCCATGTT
EV545316       --> TTATAAGCCGAGAGGTTGACTTTTCTTCCGATGGGAACTCCTTCCATGTT
FD942218       --> TTATAAGCCGAGAGGTTGACTTTTCTTCCGATG--AACTCCTTCCATGTT
FD539458       --> TTATAAGCCGAGAGGTTGACTTTTCTTCCGATGGGAACTCCTTCCATGTT
FD942758       --> ..................................................
EV529601       --> TTATAAGCCGAGAGGTTGACTTTTCTTCCGATGGGAACTCCTTCCATGTT

               551    -    601
UN09717        --> GATCTTAACGTACAACTCTCTTTCTTCATCACTCTCAATCTTCTTTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- GATCTTAACGTACAACTCTCCTTCTTCATCACTCTCAATCTTCTTTATCT
FD946681       <-- GATCTTAACGTACAACTCTCTTTCTTCATCACTCTCAATCTTCTTTATCT
EY921707       <-- GATCTTAACGTACAACTCTCTTTCTTCATCACTCTCAATCTTCTTTATCT
EV524657       <-- GATCTTAACGTACAACTCTCTTTCTTCATCACTCTCAATCTTCTTTATCT
FD946021       <-- GATCTTAACGTACAACTCTCTTTCTTCATCACTCTCAATCTTCTTTATCT
EV545316       --> GATCTTAACGTACAACTCTCCTTCTTCATCACTCTCAATCTTCTTTATCT
FD942218       --> GATCTTAACGTACAACTCTCTTTCTTCATCACTCTCAATCTTCTTTATCT
FD539458       --> GATCTTAACGTACAACTCTCTTTCTTCATCACTCTCAATCTTCTTTATCT
FD942758       --> ..................................................
EV529601       --> GATCTTAACGTACAACTCTCTTTCTTCATCACTCTCAATCTTCTTTATCT

               601    -    651
UN09717        --> CTTCCTTTAGCTGTGCCGTTAGGTATCGCCGGGAAGATCTTACCGGCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- CTTCCTTTAGCTGTGCCGTTAGGTATCGCCGGGAAGATCTTACCGGCGGC
FD946681       <-- CTTCCTTTAGCTGTGCCGTTAGGTATCGCCGGGAAGATCTTACCGGCGGC
EY921707       <-- CTTCCTTTAGCTGTGCCGTTAGGTATCGCCGGGAAGATCTTACCGGCGGC
EV524657       <-- CTTCCTTTAGCTGTGCCGTTAGGTATCGCCGGGAAGATCTTACCGGCGGC
FD946021       <-- CTTCCTTTAGCTGTGCCGTTAGGTATCGCCGGGAAGATCTTACCGGCGGC
EV545316       --> CTTCCTTTAGCTGTGCCGTTAGGTATCGCCGGGAAGATCTTACCGGCGGC
FD942218       --> CTTCCTTTAGCTGTGCCGTTAGGTATCGCCGGGAAGATCTTACCGGCGGC
FD539458       --> CTTCCTTTAGCTGTGCCGTTAGGTATCGCCGGGAAGATCTTACCGGCGGC
FD942758       --> ..................................................
EV529601       --> CTTCCTTTAGCTGTGCCGTTAGGTATCGCCGGGAAGATCTTACCGGCGGC

               651    -    701
UN09717        --> CATCCCACCACAGGAGCTGCCTCCACCCTGTTACTGGAAACAAAAGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- CATCCCACCACAGGAGCTGCCTCCACCCTGTTACTGGAAACAAGAGGTGT
FD946681       <-- CATCCCACCACAGGAGACGCCTCCACCCTGTTACTGGAAACAAAAGGTGT
EY921707       <-- CATCCCACCACAGGAGCTGCCTCCACCCTGTTACTGGAAACAAAAGGTGT
EV524657       <-- CATCCCACCACAGGAGCTGCCTTCACCCTGTTACTGGAAACAAAAGGTGT
FD946021       <-- CATCCCACCACAGGAGCTGCCTCCACCCTGTTACTGGAAACAAAAGGTGT
EV545316       --> CATCCCACCACAGGAGCTGCCTCCACCCTGTTACTGGAAACAAGAGGTGT
FD942218       --> CATCCCACCACAGGAGCTGCCTCCAC........................
FD539458       --> CATCCCACCACAGGAGCTGCCTCCACCCTGTTACTGGAAACAAAAGGTGC
FD942758       --> ..................................................
EV529601       --> CATCCCACCACAGGAGCTGCCTTCACCCTGTTACTGGAAACAAAAGGTGT

               701    -    751
UN09717        --> TTCTTTGGCGAGGCTTCTTTGTTTAGGTCCATTGATGTTGTTGGAAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- TTCTTTGGCGAGGCTTCTTTGTTTAGGTCCATTGATGTTGTTGGAAGTGA
FD946681       <-- TTCTTTGGCGAGGTTTATTTGTTTAGGTCCATTGATGTTGTTGGAAGTGA
EY921707       <-- TTCTTTGGCGAGGCTTCTTTGTTTAGGTCCATTGATGTTGTTGGAAGTGA
EV524657       <-- TTCTTTGGCGAGGCTTCTTTGTTTAGGTCCATTGATGTTGTTGGAAGTGA
FD946021       <-- TTCTTTGGCGAGGTTTCTTTGTTTAGGTCCATTGATGTTGTTGGAAGTGA
EV545316       --> TTCTTTGGCGAGGCTTCTTTGTTTAGGTCCATTGATGTTGTTGGAAGTGA
FD942218       --> ..................................................
FD539458       --> TTCTTTGGCGAGGCTTCTTTGTTTAGGTCCATTGATGTTGTTGGA.....
FD942758       --> ..................................................
EV529601       --> TTCTTTGGCGAGGCTTCTTTGTTTAGGTCCATTGATGTTGTTGGAAGTGA

               751    -    801
UN09717        --> GTTGGTGACAAGGAGGAGCCAGCCTAAGTTCCAGTCTCTTCTCTTCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV549941       <-- GTTGGTGGCAAGGAGGAGCCAGCCTAAGTTCCAGTCTCTTCTCTTCTTCC
FD946681       <-- GTTGGTGACAAGGAGGAGCCAGCCTAAGTTCCAGTCTCTTCTCTTCTTCC
EY921707       <-- GTTGGTGACAAGGAGGAGCCAGCCTAAGTTCCAGTCTCTTCTCTTCTTCC
EV524657       <-- GTTGGTGACAAGGAGGAGCCAGCCTAAGTTCCAGTCTCTTCTCTTCTTCC
FD946021       <-- GTTGGTGACAAGGAGGAGCCGGCCTAAGTTCCAGTCTCTTCTCTTCTTCC
EV545316       --> GTTGGTGGCAAGGAGGAGCCAGCCTAAGTTCCAGTCTCTTCTCTTCTTCC
FD942218       --> ..................................................
FD539458       --> ..................................................
FD942758       --> ..................................................
EV529601       --> GTTGGTGACAAGGAGGAGCCAGCCTAAGTTCCAGTCTCTTCTCTTCTTCC

               801    -    851
UN09717        --> ATTTCTTGGTTTGT....
                   ~~~~~~~~~~~~~~~~~~
EV549941       <-- ATTTCTTGGTTTtc....
FD946681       <-- ATTTCTTGGTTTGTcc..
EY921707       <-- ATTTCTTGGTTTcc....
EV524657       <-- ATTTCTTGGTTTGTgttc
FD946021       <-- ATTTCTTGGTTTGTcc..
EV545316       --> ATTTCTTGGTTTtc....
FD942218       --> ..................
FD539458       --> ..................
FD942758       --> ..................
EV529601       --> ATTTCTTGGTTTGTgttc