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Alignment for radish unigene UN09722

               1      -     51
UN09722        --> GGGAGTTCTTTCCAGAATAATTCGTGTGGCCAAGGCTTCAAAATCTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- .................................GGCTTCAAAATCTGATC
EV530853       <-- .......................................AAAATCTGATC
EV530528       <-- ..................................................
EY912807       <-- ..................................................
EY935715       <-- ..................................................
FD567626       <-- ..................................................
FD960445       <-- ..................................................
EY904463       <-- ..................................................
EV526350       --> GGGAGTTCTTTCCAGAATAATTCGTGTGGCCAATCCTTCAAAATCTGATC
EW726447       --> .................................GGCTTCAAAATCTGATC
EY939856       --> ..................................................
FD564048       --> ..................................................
EV525910       --> ..................................................
EY917260       --> ..................................................
FD964915       --> ..................................................
EY908833       --> ..................................................
FD964445       --> ..................................................

               51     -    101
UN09722        --> AAATAAAAAAAAACACTCATAATCAATTATCCTTGGAAAAGCCATACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- AAATAAAAAAAA-CACTCATAATCAATTATCCTTGGAAAAGCCATACGAG
EV530853       <-- AAATAAAAAAAAACACTCATAATCAATTATCCTTGGAAAAGCCATACGAG
EV530528       <-- ................................ggGGAAAAGCCATACGAG
EY912807       <-- ................................ggGGAAAAGCCATACGAG
EY935715       <-- .........................................CCATACGAG
FD567626       <-- .................................................G
FD960445       <-- ..................................................
EY904463       <-- ..................................................
EV526350       --> AAATAAAAAAAAACACTCATAATCAATTATCCTTGGAAAAGCCATACGAG
EW726447       --> AAATAAAAAAAA-CACTCATAATCAATTATCCTTGGAAAAGCCATACGAG
EY939856       --> ..........................ggATCCTTGGAAAAGCCATACGAG
FD564048       --> ...............................CTTGGAAAAGCCATACGAG
EV525910       --> ................................ggGGAAAAGCCATACGAG
EY917260       --> ................................ggGGAAAAGCCATACGAG
FD964915       --> .............................................ggGAG
EY908833       --> .................................................g
FD964445       --> ..................................................

               101    -    151
UN09722        --> AGATAGAGAGAAAAAAA-GGAAAAAAAACATGAACCTAGGATCGGTTACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- AGATAGAGAGAAAAAAA-GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus sativus cv Early Scarlet Globe
EV530853       <-- AGATAGAGAGAAAAAA--GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus raphanistrum subsp. maritimus
EV530528       <-- AGATAGAGAGAAA------AAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus raphanistrum subsp. maritimus
EY912807       <-- AGATAGAGAGAAAAAAA-GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY935715       <-- AGATAGAGAGAAAAAAA-GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus sativus cv Early Scarlet Globe
FD567626       <-- AGATAGAGAGAAAAAA--GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus sativus var. oleiformis
FD960445       <-- ...........................ACATGAACCTAGGATCGGTTACG  Raphanus raphanistrum subsp. maritimus
EY904463       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526350       --> AGATAGAGAGAAAAAA--GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus raphanistrum subsp. maritimus
EW726447       --> AGATAGAGAGAAAAAAA-GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus sativus cv Early Scarlet Globe
EY939856       --> AGATAGAGAGAAAAAAA-GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus sativus cv Early Scarlet Globe
FD564048       --> AGATAGAGAGAAAAAA--GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus sativus var. oleiformis
EV525910       --> AGATAGAGAGAAAAAAA------AAAAACATGAACCTAGGATCGGTTACG  Raphanus raphanistrum subsp. maritimus
EY917260       --> AGATAGAGAGAAAAAAA-GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964915       --> AGATAGAGAGAAAAAA--GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus raphanistrum subsp. maritimus
EY908833       --> gGATAGAGAGAAAAAAAAGGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964445       --> ............ggAAA-GGAAAAAAAACATGAACCTAGGATCGGTTACG  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN09722        --> CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EV530853       <-- CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EV530528       <-- CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EY912807       <-- CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EY935715       <-- CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
FD567626       <-- CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
FD960445       <-- CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EY904463       <-- ............GGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EV526350       --> CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EW726447       --> CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EY939856       --> CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
FD564048       --> CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EV525910       --> CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EY917260       --> CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
FD964915       --> CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
EY908833       --> CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC
FD964445       --> CGGTATCTTGAGGGAGAAGTAATTGAGAATGATCAAAAGGACAAGGAATC

               201    -    251
UN09722        --> AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EV530853       <-- AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EV530528       <-- AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EY912807       <-- AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EY935715       <-- AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
FD567626       <-- AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
FD960445       <-- AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EY904463       <-- AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EV526350       --> AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EW726447       --> AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EY939856       --> AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
FD564048       --> AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EV525910       --> AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EY917260       --> AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
FD964915       --> AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
EY908833       --> AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG
FD964445       --> AAAAGTTGCGAAACTACCATCCAGATTCATCGAGCGATTCGTGATGAAAG

               251    -    301
UN09722        --> GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
EV530853       <-- GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
EV530528       <-- GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
EY912807       <-- GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
EY935715       <-- GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
FD567626       <-- GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
FD960445       <-- GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTTTGCTCCATGAAA
EY904463       <-- GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTTTGCTCCATGAAA
EV526350       --> GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
EW726447       --> GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
EY939856       --> GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
FD564048       --> GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
EV525910       --> GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
EY917260       --> GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
FD964915       --> GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
EY908833       --> GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA
FD964445       --> GTATAAAAGTAGATTTCATGGAACCTGGTCGAATTGTCTGCTCCATGAAA

               301    -    351
UN09722        --> GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
EV530853       <-- GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
EV530528       <-- GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
EY912807       <-- GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
EY935715       <-- GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
FD567626       <-- GTCCAACCACATCTCCTGAACGCGGGAAAATTCTTACATGGAGGAGCAAT
FD960445       <-- GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
EY904463       <-- GTCCAACCACATCTCCTGAATGCTGGAAAATTCTTACACGGAGGAGCAAT
EV526350       --> GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
EW726447       --> GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
EY939856       --> GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
FD564048       --> GTCCAACCACATCTCCTGAACGCGGGAAAATTCTTACATGGAGGAGCAAT
EV525910       --> GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
EY917260       --> GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
FD964915       --> GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT
EY908833       --> GTCCAACCACATCTCCTGAATGCTGGAAAATTCTTACACGGAGGAGCAAT
FD964445       --> GTCCAACCACATCTCCTGAACGCAGGAAAATTCTTACATGGAGGAGCAAT

               351    -    401
UN09722        --> GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus sativus cv Early Scarlet Globe
EV530853       <-- GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus raphanistrum subsp. maritimus
EV530528       <-- GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus raphanistrum subsp. maritimus
EY912807       <-- GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY935715       <-- GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus sativus cv Early Scarlet Globe
FD567626       <-- GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAACGTAG  Raphanus sativus var. oleiformis
FD960445       <-- GGCGACAGTGGTGGATTTGATAGTAACAGCTGCAATTTACACAAGCGTAG  Raphanus raphanistrum subsp. maritimus
EY904463       <-- GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAACGTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526350       --> GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus raphanistrum subsp. maritimus
EW726447       --> GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus sativus cv Early Scarlet Globe
EY939856       --> GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus sativus cv Early Scarlet Globe
FD564048       --> GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAACGTAG  Raphanus sativus var. oleiformis
EV525910       --> GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus raphanistrum subsp. maritimus
EY917260       --> GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964915       --> GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAGCGTAG  Raphanus raphanistrum subsp. maritimus
EY908833       --> GGCGACAGTGGTGGATTTGATAGGAACAGCTGCAATTTACACAAACGTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964445       --> GGCGACAGTGGTGGATTTGATAGTAACAGCTGCAATTTACACAAGCGTAG  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN09722        --> ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EV530853       <-- ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EV530528       <-- ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EY912807       <-- ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EY935715       <-- ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
FD567626       <-- ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
FD960445       <-- ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EY904463       <-- ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EV526350       --> ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EW726447       --> ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EY939856       --> ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
FD564048       --> ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EV525910       --> ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EY917260       --> ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
FD964915       --> ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
EY908833       --> ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT
FD964445       --> ATTCAGATCTGGCGGAGGGAGTGTCAGTGGAGATCAATGTTTCATACCTT

               451    -    501
UN09722        --> GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- GATGCTGCTTTCCTTGACGACGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus sativus cv Early Scarlet Globe
EV530853       <-- GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus raphanistrum subsp. maritimus
EV530528       <-- GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus raphanistrum subsp. maritimus
EY912807       <-- GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY935715       <-- GATGCTGCTTTCCTTGACGACGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus sativus cv Early Scarlet Globe
FD567626       <-- GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus sativus var. oleiformis
FD960445       <-- GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus raphanistrum subsp. maritimus
EY904463       <-- GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526350       --> GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus raphanistrum subsp. maritimus
EW726447       --> GATGCTGCTTTCCTTGACGACGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus sativus cv Early Scarlet Globe
EY939856       --> GATGCTGCTTTCCTTGACGACGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus sativus cv Early Scarlet Globe
FD564048       --> GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus sativus var. oleiformis
EV525910       --> GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus raphanistrum subsp. maritimus
EY917260       --> GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964915       --> GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus raphanistrum subsp. maritimus
EY908833       --> GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964445       --> GATGCTGCTTTCCTTGACGAAGAGCTAGAGATTGAATCGAGGGCACTGCG  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN09722        --> TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA  Raphanus sativus cv Early Scarlet Globe
EV530853       <-- TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA  Raphanus raphanistrum subsp. maritimus
EV530528       <-- TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA  Raphanus raphanistrum subsp. maritimus
EY912807       <-- TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAAGAAGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY935715       <-- TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA  Raphanus sativus cv Early Scarlet Globe
FD567626       <-- TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGGAAGAAGA  Raphanus sativus var. oleiformis
FD960445       <-- TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA  Raphanus raphanistrum subsp. maritimus
EY904463       <-- TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGGTGAGGAGGAAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526350       --> TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA  Raphanus raphanistrum subsp. maritimus
EW726447       --> TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA  Raphanus sativus cv Early Scarlet Globe
EY939856       --> TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA  Raphanus sativus cv Early Scarlet Globe
FD564048       --> TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGGAAGAAGA  Raphanus sativus var. oleiformis
EV525910       --> TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA  Raphanus raphanistrum subsp. maritimus
EY917260       --> TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAAGAAGAA-A  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964915       --> TGTGGGTAAAGCTGTTGCGGTTGCGAGTATTGAGCTGAGGAGTAAGAAGA  Raphanus raphanistrum subsp. maritimus
EY908833       --> TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGGTGAGGAGGAAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964445       --> TGTGGGTAAAGCTGTTGCGGTTGCGAGTGTTGAGCTGAGGAGTAAGAAGA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN09722        --> ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EV530853       <-- ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EV530528       <-- ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EY912807       <-- ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EY935715       <-- ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
FD567626       <-- ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
FD960445       <-- ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EY904463       <-- ATGGTAATACTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EV526350       --> ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EW726447       --> ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EY939856       --> ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
FD564048       --> ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EV525910       --> ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EY917260       --> ATGGTAATATTATTG...................................
FD964915       --> ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT
EY908833       --> ATGGTAATACTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCC...
FD964445       --> ATGGTAATATTATTGCTCAAGGTCGCCATACTAAGTACCTTGCTCCCCGT

               601    -    651
UN09722        --> CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
EV530853       <-- CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
EV530528       <-- CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
EY912807       <-- CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTGTATCTCTTTCTTT
EY935715       <-- CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
FD567626       <-- CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
FD960445       <-- CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
EY904463       <-- CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTTTTT
EV526350       --> CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
EW726447       --> CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
EY939856       --> CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
FD564048       --> CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
EV525910       --> CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
EY917260       --> ..................................................
FD964915       --> CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT
EY908833       --> ..................................................
FD964445       --> CCTAAGCTTTGAATGAATTTTAATTATTTCTTTACTATATCTCTTTCTTT

               651    -    701
UN09722        --> TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
EV530853       <-- TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
EV530528       <-- TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
EY912807       <-- TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
EY935715       <-- TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
FD567626       <-- TACCTCATGCAAATAAGAATATCAGTTTGTTTTTTATCTGATCATGCATG
FD960445       <-- TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
EY904463       <-- TATTTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
EV526350       --> TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
EW726447       --> TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
EY939856       --> TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
FD564048       --> TACCTCATGCAAATAAGAATATCAGTTTGTTTTTTATCTGATCATGCATG
EV525910       --> TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG
EY917260       --> ..................................................
FD964915       --> TACCTCATGC........................................
EY908833       --> ..................................................
FD964445       --> TACCTCATGCAAATAAGAATATCGGTTTGTTTTTTATCTGATCATGCATG

               701    -    751
UN09722        --> AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- AGTTTGCGTGAATCAGATACTTCATAATGATAATGCTAATAAAACCTCAG
EV530853       <-- AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG
EV530528       <-- AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG
EY912807       <-- AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG
EY935715       <-- AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG
FD567626       <-- AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCCCAG
FD960445       <-- AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG
EY904463       <-- AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG
EV526350       --> AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG
EW726447       --> AGTTTGCGTGAATCAGATACTTCATAATGATAATG...............
EY939856       --> AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG
FD564048       --> AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCCCAG
EV525910       --> AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG
EY917260       --> ..................................................
FD964915       --> ..................................................
EY908833       --> ..................................................
FD964445       --> AGTTTGCGTGAATCAGATACTTCATAATAATAATGCTAATAAAACCTCAG

               751    -    801
UN09722        --> GGATCTACAATATTTGTAATGGCCATCTTTGTTGGTAACTTAGAATTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- GGAact............................................
EV530853       <-- GGATCTACAATATTTGTAATGGCCATCTTTGTTGGTAGCTTAGAATTTGA
EV530528       <-- GGATCTAC..........................................
EY912807       <-- GGATCTAC..........................................
EY935715       <-- GGAACTACAATATTTGTAATGGCCATCTTTGTTGGCAACTTAGAATTTGA
FD567626       <-- GGATCTACAATATTTGTAATGGCCATCTTTGTTGGTAACTTAGAATTTGA
FD960445       <-- GGATCTACAATATTTGTAATGGCCATCTTTGTTGGTAACTTAGAATTTGA
EY904463       <-- GGATCTACAATATTTGTAATGGCCATCTTTGTTGGTAACTTAGAATTTGA
EV526350       --> GGATC.............................................
EW726447       --> ..................................................
EY939856       --> Gaac..............................................
FD564048       --> GGATCTACAATATTTGTAATGGCCATCTTTGTTGGTAACTTAGAATTTGA
EV525910       --> GGATCTAC..........................................
EY917260       --> ..................................................
FD964915       --> ..................................................
EY908833       --> ..................................................
FD964445       --> GGATCTACAATATTTGTAATGGCCATCTTTGTTGGTAACTTAGAATTTGA

               801    -    851
UN09722        --> TTATGTTGTATCTCTGTTTTAGTTTCGCATCATGATTCATATTACTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW730608       <-- ..................................................
EV530853       <-- TTATGTTGTATCTCTGTTTTAGTTTCGCATCATGATTCATATTACTTTGT
EV530528       <-- ..................................................
EY912807       <-- ..................................................
EY935715       <-- TTATGTTGGATCTCTGTTTTAGTTTCGCATCA..................
FD567626       <-- TT................................................
FD960445       <-- TTATGTTGTATCTCTGTTTTAGTTag........................
EY904463       <-- TTATGTTGGATC......................................
EV526350       --> ..................................................
EW726447       --> ..................................................
EY939856       --> ..................................................
FD564048       --> T.................................................
EV525910       --> ..................................................
EY917260       --> ..................................................
FD964915       --> ..................................................
EY908833       --> ..................................................
FD964445       --> TTATGTTGTATCTCTGTTTagttagaaaaa....................

               851    -    901
UN09722        --> GTTTTTGCG
                   ~~~~~~~~~
EW730608       <-- .........
EV530853       <-- GTTTTTGCG
EV530528       <-- .........
EY912807       <-- .........
EY935715       <-- .........
FD567626       <-- .........
FD960445       <-- .........
EY904463       <-- .........
EV526350       --> .........
EW726447       --> .........
EY939856       --> .........
FD564048       --> .........
EV525910       --> .........
EY917260       --> .........
FD964915       --> .........
EY908833       --> .........
FD964445       --> .........