1      -     51
UN09735        --> GGAATCAAAATTATCGGTAATAAAATAAATTCCAGTGTATTTCTCGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- ..................................................
EX751003       <-- ..................................................
EY935534       <-- ..................................................
EX777724       <-- ..................................................
FD951297       <-- ..................................................
EX746647       --> GGAATCAAAATTATCGGTAATAAAATAAATTCCAGTGTATTTCTCGCTTC
EX749489       --> ..................................................
EW734013       --> ..................................................
EX756756       --> ..................................................
EY939633       --> ..................................................
EV549149       --> ..................................................

               51     -    101
UN09735        --> ATTAATTCTTCTATTTAAAGGGGTTAAACAGCTTAGAAGGGAACAGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- ..................................................
EX751003       <-- ..................................................
EY935534       <-- ..................................................
EX777724       <-- ..................................................
FD951297       <-- ..................................................
EX746647       --> ATTAATTCTTCTATTTAAAGGGGTTAAACAGCTTAGAAGGGAACAGATTC
EX749489       --> ......................................ggaAACAGATTC
EW734013       --> ............................................gGATTC
EX756756       --> ............................................gGATTC
EY939633       --> ............................................gGATTC
EV549149       --> ..........................................ggatATTC

               101    -    151
UN09735        --> ATTCTCAAAACAAAAACAAAACCCTAAAGACACTTTTGCAATTTATCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- .....................CCCTAAAGACACTTTTGCAAATTATCGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX751003       <-- ...........................AGACACTTTTGCAATTTACCGAG  Raphanus raphanistrum subsp. maritimus
EY935534       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX777724       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD951297       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX746647       --> ATACTCAAAACAAAAACAAAACCCTAAAGACACTTTTGCAATTTACCGAG  Raphanus raphanistrum subsp. maritimus
EX749489       --> ATACTCAAAACAAAAACAAAACCCTAAAGACACTTTTGCAATTTACCGAG  Raphanus raphanistrum subsp. maritimus
EW734013       --> ATTCTCAAAACAAAAACAAAACCCTAAAGACACTTTTGCAAATTATCGAG  Raphanus sativus cv Rat-Tail Radish #3870
EX756756       --> ATTCTCAAAGCAAAAACAAAACCCTAAAGACACTTTTGCAAATTATCGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939633       --> ATACTCAAAACAAAAACAAAACCCTAAAGACACTTTTGCAATTTACCGAG  Raphanus sativus cv Early Scarlet Globe
EV549149       --> ATTCTCAAAACAAAAACAAAACCCTAAAGACACTTTTGCAAATTATCGAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN09735        --> AGATCAAGAATGGCAGAAGAAGCATCAAGTTTGGTCGGGATCATTGAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- AGATCAAGAATGGCAGAAGAAGCATCAAGTTTGGTCGGGATCATTGAGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX751003       <-- AGATCAAAAATGGCAGAAGAAGCATCAAGTTTGGTCGGGATCATTGAGAC  Raphanus raphanistrum subsp. maritimus
EY935534       <-- .....................................GGATCATTGAGAC  Raphanus sativus cv Early Scarlet Globe
EX777724       <-- .......................................ATCATTGAGAC  Raphanus raphanistrum subsp. landra
FD951297       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX746647       --> AGATCAAAAATGGCAGAAGAAGCATCAAGTTTGGTCGGGATCATTGAGAC  Raphanus raphanistrum subsp. maritimus
EX749489       --> AGATCAAAAATGGCAGAAGAAGCATCAAGTTTGGTCGGGATCATTGAGAC  Raphanus raphanistrum subsp. maritimus
EW734013       --> AGATCAAGAATGGCAGAAGAAGCATCAAGTTTGGTCGGGATCATTGAGAC  Raphanus sativus cv Rat-Tail Radish #3870
EX756756       --> AGATCAAGAATGGCAGAAGAAGCATCAAGTTTGGTCGGGATCATTGAGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939633       --> AGATCAAAAATGGCAGAAG---CATCAAGTTTGGTCGGGATCATTGAGAC  Raphanus sativus cv Early Scarlet Globe
EV549149       --> AGATCAAGAATGGCAGAAGAAGCATCGAGTTTGGTCGGGATCATTGAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN09735        --> AACCGTGGAGGTAAAATCTTCACCGGAGAAGGTGCATGGCATGTTTGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- AACCGTGGAGGTAAAATCTTCACCAGAGAAGGTGCATGACATGTTTGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX751003       <-- AACCGTGGAGGTAAAATCTTCGCCGGAGAAGGTGCATGGCATGTTTGTCG  Raphanus raphanistrum subsp. maritimus
EY935534       <-- AACCGTGGAGGTAAAATCTTCGCCGGAGAAGGTGCATGGCATGTTTGTCG  Raphanus sativus cv Early Scarlet Globe
EX777724       <-- AACCGTGGAGGTAAAATCTTCACCAGAGAAGGTGCATGACATGTTTGTCG  Raphanus raphanistrum subsp. landra
FD951297       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX746647       --> AACCGTGGAGGTAAAATCTTCGCCGGAGAAGGTGCATGGCATGTTTGTCG  Raphanus raphanistrum subsp. maritimus
EX749489       --> AACCGTGGAGGTAAAATCTTCTCCGGAGAAGGTGCATGGCATGTTTGTCG  Raphanus raphanistrum subsp. maritimus
EW734013       --> AACCGTGGAGGTAAAATCTTCACCAGAGAAGGTGCATGACACGTTTGTCG  Raphanus sativus cv Rat-Tail Radish #3870
EX756756       --> AACCGTGGAGGTAAAATCTTCACCAGAGAAGGTGCATGACATGTTTGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939633       --> AACCGTGGAGGTAAAATCTTCGCCGGAGAAGGTGCATGGCATGTTTGTCG  Raphanus sativus cv Early Scarlet Globe
EV549149       --> AACCGTGGAGGTAAAATCTTCACCAGAGAAGGTGCATGACATGTTTGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN09735        --> GGAAACACCGTATCCCCTCTGCTTCTCCATCCTTAGTTCAGGGCTTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- GGAAACACCGTATCCCCACTGCTTCTCCATCCTTAGTTCAGGGCTTTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX751003       <-- GGAAACACCGTATCCCCTCTGCTTCTCCATCCTTAGTTCAGGGCTTTGAG  Raphanus raphanistrum subsp. maritimus
EY935534       <-- GGAAACACCGTATCCCCTCTGCTTCTCCATCCTTAGTTCAGGGCTTTGAG  Raphanus sativus cv Early Scarlet Globe
EX777724       <-- GGAAACACCGTATCCCCACTGCTTCTCCATCCTTAGTTCAGGGCTTTGAA  Raphanus raphanistrum subsp. landra
FD951297       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX746647       --> GGAAACACCGTATCCCCTCTGCTTCTCCATCCTTAGTTCAGGGCTTTGAG  Raphanus raphanistrum subsp. maritimus
EX749489       --> GGAAACACCGTACCCCCTCTGCTTCTCCATCCTTAGTTCAGGGCTTTGAG  Raphanus raphanistrum subsp. maritimus
EW734013       --> GGAAACACCGTATCCCCACTGCTTCTCCATCCTTAGTTCAGGGCTTTGAA  Raphanus sativus cv Rat-Tail Radish #3870
EX756756       --> GGAAACACCGTATCCCCACTGCTTCTCCATCCTTAGTTCAGGGCTTTGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939633       --> GGAAACACCGTATCCCCTCTGCTTCTCCATCCTTAGTTCAGGGCTTTGAG  Raphanus sativus cv Early Scarlet Globe
EV549149       --> GGAAACACCGTATCCCCACTGCTTCTCCATCCTTAGTTCAGGGCTTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN09735        --> CTGCACGAAGGCGAAATTGGCCAAGTTGGTGCTATCGTAACCTGGAATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- CTGCACGAAGGCGAAATTGGCCAAGTTGGTGCTATCGTAACCTGGAATTA
EX751003       <-- CTGCACGAAGGCGAAATTGGCCAAGTTGGTGCTATCGTAACCTGGAATTA
EY935534       <-- CTGCACGAAGGCGAAATTGGCCAAGTTGGTGCTATCGTAACCTGGAATTA
EX777724       <-- CTGCACGAAGGCGAAATTGGCCTAGTTGGTGCTATCGTAACCTGGAATTA
FD951297       <-- ..................................................
EX746647       --> CTGCACGAAGGCGAAATTGGCCAAGTTGGTGCTATCGTAACCTGGAATTA
EX749489       --> CTGCACGAAGGCGAAATTGGCCAAGTTGGTACTATCGTAACCTGGAATTA
EW734013       --> CTGCACGAAGGCGAAATTGGCCAAGTTGGTGCTATCGTAACCTGGAATTA
EX756756       --> CTGCACGAAGGCGAAATTGGCCAAGTTGGTGCTATCGTAACCTGGAATTA
EY939633       --> CTGCACGAAGGCGAAATTGGCCAAGTTGGTGCTATCGTAACCTGGAATTA
EV549149       --> CTGCACGAAGGCGAAATTGGCCAAGGTGGTGCTATCGTAACCTGGAATTA

               351    -    401
UN09735        --> CTTTCACGATGGGGAGGCAAGAGTAATGAAAGAGAGGATCGAGTCAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- CTTTCACGATGGGGAGGCAATAGTAATGAAAGAGAGGATCGAGTCAATAG
EX751003       <-- CTTTCACGATGGGGAGGCAAGAGTAATGAAAGAGAGGATCGAGTCAATAG
EY935534       <-- CTTTCACGATGGGGAGGCAAGAGTAATGAAAGAGAGGATCGAGTCAATAG
EX777724       <-- CTTTCACGATGGGGAGGCAAGAGTAATGAAAGAGAGGATCGAGTCAATAG
FD951297       <-- ......CGATGGGGAGGCAAGAGTAATGAAAGAGAGGATCGAGTCAATAG
EX746647       --> CTTTCACGATGGGGAGGCAAGAGTAATGAAAGAGAGGATCGAGTCAATAG
EX749489       --> CTTTCACGATGGGGAGGCAAGAGTAA--AAAGAGAGGATCGAGTCAATAG
EW734013       --> CTTTCACGATGGGGAGGCAAGAGTAATGAAAGAGAGGATCGAGTCAATAG
EX756756       --> CTTTCACGATGGGGAGGCAATAGTAATGAAAGAGAGGATCGAGTCAATAG
EY939633       --> CTTTCACGATGGGGAGGCAAGAGTAATGAAAGAGAGGATCGAGTCAATAG
EV549149       --> CTTTCACGATGGGGAGGCAAGAGTAATGAAAGAGAGGATCGAGTCAATAG

               401    -    451
UN09735        --> ACCCGGAGAACAATCGGGCCACGTACAGGGTGTTAGAGGGTGATTTAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- ACCCGGAGAACAATCGGGCCACGTACCGGGTGTTGGAGGGTGATTTAATG
EX751003       <-- ACCCGGAGAACAATCGGGCCACGTACAGGGTGTTAGAGGGTGATTTAATG
EY935534       <-- ACCCGGAGAACAATCGGGCCACGTACAGGGTGTTAGAGGGTGATTTAATG
EX777724       <-- ACCCGGAGAACAATCAGGCCACGTACAGGGTGTTAGAGGGTGATTTAATG
FD951297       <-- ACCCGGAGAACAATCGGGCCACGTACAGGGTGTTAGAGGGTGATTTAACG
EX746647       --> ACCCGGAGAACAATCGGGCCACGTACAGGGTGTTAGAGGGTGATTTAATG
EX749489       --> ACCCGGAGAACAATCGGGCCACGTACAGGGTGTTAGAGGGTGATTTAATG
EW734013       --> ACCCGGAGAACAATCGGGCCACGTACAGGGTGTTAGAGGGTGATTTAATG
EX756756       --> ACCCGGAGAACAATCGGGCCACGTACCGGGTGTTGGAGGGTGATTTAATG
EY939633       --> ACCCGGAGAACAATCGGGCCACGTACAGGGTGTTAGAGGGTGATTTAATG
EV549149       --> ACCCGGAGAACAATCGGGCCACGTACAGGGTGTTAGAGGGTGATTTAATG

               451    -    501
UN09735        --> AACGAGTACAAGAGTTTCTTGATCACCTTTCAAGTGACCCCTAAGGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- AACGAGTACAAGAGTTTCTTGATCACCTTTCAAGTGACCCCTAAGGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX751003       <-- AACGAGTACAAGAGTTTCTTGATCACCTTTCAAGTGACCCCTAATGAAGG  Raphanus raphanistrum subsp. maritimus
EY935534       <-- AACGAGTACAAGATTTTCTTGATCACCTTTCAAGTGACCCCTAATGAAGG  Raphanus sativus cv Early Scarlet Globe
EX777724       <-- AACGAGTACAAGAGTTTCTTGATCACCTTTCAAGTGACCCCTAAGGAAGG  Raphanus raphanistrum subsp. landra
FD951297       <-- AACGAGTACAAGAGTTTCTTGATCACCTTTCAAGTGACCCCTAAGGAAGG  Raphanus sativus cv Rat-Tail Radish #3870
EX746647       --> AACGAGTACAAGAGTTTCTTGATCACCTTTCAAGTGACCCCTAATGAAGG  Raphanus raphanistrum subsp. maritimus
EX749489       --> AACGAGTACAAGAGTTTCTTGATCACCTTTCAAGTGACCCCTAATGAAGG  Raphanus raphanistrum subsp. maritimus
EW734013       --> AACGAGTACAAGAGTTTCTTGATCACCTTTCAAGTGACCCCTAAGGAAGG  Raphanus sativus cv Rat-Tail Radish #3870
EX756756       --> AACGAGTACAAGAGTTTCTTGATCACCTTTCAAGTGACCCCTAAGGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939633       --> AACGAGTACAAGATTTTCTTGATCACCTTTCAAGTGACCCCTAATGAAGG  Raphanus sativus cv Early Scarlet Globe
EV549149       --> AACGAGTACAAGAGTTTCTTGATCACCTTTCAAGTGACCCCTAAGGAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN09735        --> TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG
EX751003       <-- TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG
EY935534       <-- TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG
EX777724       <-- TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATT-GTG
FD951297       <-- TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG
EX746647       --> TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG
EX749489       --> TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG
EW734013       --> TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG
EX756756       --> TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG
EY939633       --> TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG
EV549149       --> TGAACCTGGAAGTATTTTACATTGGCACTTTGAGTACGAGAAAATTAGTG

               551    -    601
UN09735        --> AGGAGGTGGCTCACCCTGAGACTCTCCTCCAGTTTGCCGTCGAGGTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- AGGAGGTGGCTCACCCTGAGACCCTCCTCCAGTTTGCCGTCGAGGTCTCC
EX751003       <-- AGGAGGTGGCTCACCCTGAGACTCTCCTCCAGTTTGCCGTCGAGGTCTCC
EY935534       <-- AGGAGGTGGCTCACCCTGAGACTCTCCTCCAGTTTGCCGTCGAGGTCTCC
EX777724       <-- AGGAGGTGGCTCACCCTGAGACTCTCCTCCAGTTTGCCGTCGAGGTCTCC
FD951297       <-- AGGAGGTGGCTCACCCTGAGACTCTCCTCCAGTTTGCCGTCGAGGTCTCC
EX746647       --> AGGAGGTGGCTCACCCTGAGACTCTCCTCCAGTTTGCCGTCGAGGTCTCC
EX749489       --> AGGAGGTGGCTCACCCTGAGACTCTCCTCCAGTTTGCCGTCGAGGTCTCC
EW734013       --> AGGAGGTGGCTCACCCTGAGACTCTCCTCCAGTTTGCCGTCGAGGTCTCC
EX756756       --> AGGAGGTGGCTCACCCTGAGACCCTCCTCCAGTTTGCCGTCGAGGTCTCC
EY939633       --> AGGAGGTGGCTCACCCTGAGACTCTCCTCCAGTTTGCCGTCGAGGTCTCC
EV549149       --> AGGAGGTGGCTCACCCTGAGACTCTCCTCCAGTTTGCCGTCGAGGTCTCC

               601    -    651
UN09735        --> AAAGAGATCGATGCACATCTCATGTCCGAAGAATAGAGGATGAATTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- AAAGAGATCGATGCACATCTCATGTCCGAAGAATAGAGGATGAATTCTCT
EX751003       <-- AAAGAGATCGATGCACATCTCATGTCCGAAGAATAGAGGATGAATTCTCT
EY935534       <-- AAAGAGATCGATGCACATCTCATGTCCGAAGAATAGAGGATGAATTCTCT
EX777724       <-- AAAGAGATCGATGCACATCTCATGTCCGAAGAATAGAGGATGAATTCTCT
FD951297       <-- AAAGAGATCGATGCACATTTCATGTCCGAAGAATAGAGGATGAATTCTCT
EX746647       --> AAAGAGATCGATGCACATCTCATGTCCGAAGAATAGAGGATGAATTCTCT
EX749489       --> AAAGAGATCGATGCGCATCTCATGTCCGAAGAATAGAGGATGAATTCTCT
EW734013       --> AAAGAGATCGATGCACATCTCATGTCCGAAGAATAGAGGATGAATTCTCT
EX756756       --> AAAGAGATCGATGCACATCTCATGTCCGAAGAATAGAGGATGAATTCTCT
EY939633       --> AAAGAGATCGATGCACATCTCATGTCCGAAGAATAGAGGATGAATTCTCT
EV549149       --> AAAGAGATCGATGCACATCTCATGTCCGAAGAATAGAGGATGAATTCTCT

               651    -    701
UN09735        --> TGTCTCAATCCCATATATCCATAATTATATTTGTGTGTTTGCCTTTAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- TGTCTCAATCCCATATATCCATAATTATATTTGTGTGTTTGCCTTTAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX751003       <-- TGTCTCAATCCCATATATCCCTAATTATATTTGTGTGGTTGCCTTTAAGT  Raphanus raphanistrum subsp. maritimus
EY935534       <-- TGTCTCAATCCCATATATCCCTAATTATATTTGTGTGTTTGCCTTTAAGT  Raphanus sativus cv Early Scarlet Globe
EX777724       <-- TGTCTCAATCCCATATATCCATAATTATATTTGTGTGTTTGCCTTTAA..  Raphanus raphanistrum subsp. landra
FD951297       <-- TGTCTCAATCCCATATATCCATAATTATATTTGTGTGTTTGCCTTTAAGT  Raphanus sativus cv Rat-Tail Radish #3870
EX746647       --> TGTCTCAATCCCATATATCCCTAATTATATTTGTGTGGTTGCCTTTAAGT  Raphanus raphanistrum subsp. maritimus
EX749489       --> TGTCTCAATCCCATATATCCCTAATT........................  Raphanus raphanistrum subsp. maritimus
EW734013       --> TGTCTCAATCCCATATATCCATAATTATATTTTTGTGTTTGCCTTTAAGT  Raphanus sativus cv Rat-Tail Radish #3870
EX756756       --> TGTCTCAATCCCATATATCCATAATTATATTTGTGTGTTTGCCTTTAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939633       --> TGTCTCAATCCCATATATCCCTAATTATATTTGTGTGTTTGCCTTTAAGT  Raphanus sativus cv Early Scarlet Globe
EV549149       --> TGTCTCAATCCCATATATCCATAATTATATTTGTGTGTTTGCCTTTAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN09735        --> TCTGTCTTTGAAATTACTATAAATAAGGACTAAGGAGACGCCTTGTCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- TCTGTCTTTGAAATTACTATAAATAAGGACTAAGGAGACGCCTTGTCCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX751003       <-- TCTGTCTTTGAAATTACTATAAATAAAGACTAAGGAGACGCCTTGTCCGA  Raphanus raphanistrum subsp. maritimus
EY935534       <-- TCTGTCTTTGAAATTACTATAAATAAAGACTAAGGAGACGCCTTGTCCGA  Raphanus sativus cv Early Scarlet Globe
EX777724       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD951297       <-- TCTGTCTTTGAAATTACTATAAATAAGGACTAAGGAGACGCCTTGTCCGA  Raphanus sativus cv Rat-Tail Radish #3870
EX746647       --> TCTGTCTTTGAAATTACTATAAATAAAGACT...................  Raphanus raphanistrum subsp. maritimus
EX749489       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW734013       --> TCTGTCTTTGAAATTACTATAAATAAGGACTAAGGAGACGCCTTGTCCGA  Raphanus sativus cv Rat-Tail Radish #3870
EX756756       --> TCTGTCTTTGAAATTACTATAAATAAGGACTAAGGAGACGCCTTGTCCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY939633       --> TCTGTCTTTGAAATTACTAT..............................  Raphanus sativus cv Early Scarlet Globe
EV549149       --> TCTGTCTTTGAAATTACTATAAATAAGGACTAAGGAGACGCCTTGTCCGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN09735        --> GTTTGTAAAGAGATATGTGTGTCATGAGGAAGTTTTTATGTTTGAGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- GTTTGTAAAAAGATATGTGTGTCATGAGGAAGTTTTTATGTTTGAGAAGC
EX751003       <-- GTTTGTAAAGAGATATGTGTGTCATGAGGAAGTTTTTATGTTTGAGTAGC
EY935534       <-- GTTTGTAAAGAGATATGTGTGTCATGAGGAAGTTTTTATGTTTGAGAAGC
EX777724       <-- ..................................................
FD951297       <-- GTTTGTAAAGAGATATGTGTGTCATGAGGAAGTTTTTATGTTTGAGAAGC
EX746647       --> ..................................................
EX749489       --> ..................................................
EW734013       --> GTTTGTAAAGAGATATGTGTGTCATGAG-AAGTTTTTATGTTTGAGAAGC
EX756756       --> GTTTGTAAA-AGATATGTGTG.............................
EY939633       --> ..................................................
EV549149       --> GTTTGTAAAGAGATATGTGTGTCATGAGGAAGTTTTTATGTTTGAGAAGC

               801    -    851
UN09735        --> TAAGTGTAGTAGCATCAGCTATGAAGCTACTCAAAATTGATGTATGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760497       <-- TAAGTGTAGTAGCATCAGCTATGAAGCTACTCAAAATTGATGTATGAAAT
EX751003       <-- TAAGTGTAGTAGCATCAGCTATGAAGCTACTC---AAT-ATGTATGAAAT
EY935534       <-- TAAGTGTAGTAGCATCAGCTATGAAGCTACTCAAtatgtatgaaaggttt
EX777724       <-- ..................................................
FD951297       <-- TAAGTGTAGTAGCATCAGCTATGAAGCTACTCAAAATTGATGTATGAAAT
EX746647       --> ..................................................
EX749489       --> ..................................................
EW734013       --> TAAGTGTAGTAACATCAGCTATGA-GCTACTCAAAttga...........
EX756756       --> ..................................................
EY939633       --> ..................................................
EV549149       --> TAAGTGTAGTAGCATCAGCTATGAGGCTACTCAAAATTGATGTATGAAAT

               851    -    901
UN09735        --> GTTTG
                   ~~~~~
EX760497       <-- GTTTG
EX751003       <-- GTTTG
EY935534       <-- g....
EX777724       <-- .....
FD951297       <-- GTTTG
EX746647       --> .....
EX749489       --> .....
EW734013       --> .....
EX756756       --> .....
EY939633       --> .....
EV549149       --> GTTTG