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Alignment for radish unigene UN09797

               1      -     51
UN09797        --> GAATCATCTGCTTCAGAACATTCGCAAATTCTAAAAGATGGATGTTGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> GAATCATCTGCTTCAGAACATTCGCAAATTCTAAAAGATGGATGTTGCGG
EW724142       --> ..................................................
FD962858       --> ..................................................
FD963086       --> ..................................................

               51     -    101
UN09797        --> TTGGCTAAATCTCCTTCACTGGCATTCCCTTTTAATGAGATGTGTCTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> TTGGCTAAATCTCCTTCACTGGCATTCCCTTTTAATGAGATGTGTCTGAG
EW724142       --> ..................................................
FD962858       --> ..................................................
FD963086       --> ..................................................

               101    -    151
UN09797        --> AAGAAACAACATTAATTTAACAACAACCGTAGATCATAACATCTCTAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> AAGAAACAACATTAATTTAACAACAACCGTAGATCATAACATCTCTAGAT
EW724142       --> ..................................................
FD962858       --> ..................................................
FD963086       --> ..................................................

               151    -    201
UN09797        --> CAAACGATTCCATTGGTATGGAATATGAAGCTGGACATCATCATCATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> CAAACGATTCCATTGGTATGGAATATGAAGCTGGACATCATCATCATTCA
EW724142       --> ..................................................
FD962858       --> ..................................................
FD963086       --> ..................................................

               201    -    251
UN09797        --> TCGTTCGTCACTTCAATAGTCTTCTTCTCATCCAATCTGTTTATTCCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> TCGTTCGTCACTTCAATAGTCTTCTTCTCATCCAATCTGTTTATTCCCTT
EW724142       --> ..................................................
FD962858       --> ..................................................
FD963086       --> ..................................................

               251    -    301
UN09797        --> GTCTTTGAAAATCCCTATACGTGACGGTTTTCACGAGATTCTTCAATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> GTCTTTGAAAATCCCTATACGTGACGGTTTTCACGAGATTCTTCAATAAC
EW724142       --> ..................................................
FD962858       --> ..................................................
FD963086       --> ..................................................

               301    -    351
UN09797        --> TTTTTTTTTCATACACCAAACTTTTGCTTTTAGATAGAAAAAAATTATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> TTTTTTTTTCATACACCAAACTTTTACTTTTAGATAGAAAAAAATTATAT
EW724142       --> .........CATACACCAAACTTTTGCTTTTAGATAGAAAAAAATTATAT
FD962858       --> ..................................................
FD963086       --> ..................................................

               351    -    401
UN09797        --> TGGGAGATTTATCCATCTCAAAAAGATGGAGGTTGTTGTTAGTGGGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> TGGGAGATTTATCCATCTCAAAAAGATGGAGGTTGTTGCTAGTGGGAAGA
EW724142       --> TGGGAGATTTATCCATCTCAAAAAGATGGAGGTTGTTGTTAGTGGGAAGA
FD962858       --> ..................................................
FD963086       --> ..................................................

               401    -    451
UN09797        --> AAAGGATTATAAATCTTGATCTCAGTTCACGTTTGTTGTCTGAGCCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> AAAGGATTATAAATCTTGATCTCAGTTCACGTTTGTTGTCTGAGCCTCTG
EW724142       --> AAAGGATTATAAATCTTGATCTCAGTTCACGTTTGTTGTCTAAGCCTCTG
FD962858       --> ..................................................
FD963086       --> ..................................................

               451    -    501
UN09797        --> ATCCCGGGCTTGTCTGATGACGTGGCAAAGCTTTGTCTGGCGTTGGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> ATCCCGGGCTTGTCTGATGACGTGGCAAAGCTTTGTCTGGCGTTGGTTCC
EW724142       --> AACCCGGGCTTGTCTGATGACGTGGCAAAGCTTTGTCTGGCGTTGGTTCC
FD962858       --> ..................................................
FD963086       --> ..................................................

               501    -    551
UN09797        --> GCGTGCTAGCTTGCCTTCCATGGGACGTGTCTGTAAGAAATGGAGGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> GCGTGCTAGCTTGCCTTCCATGGGACGTGTCTGTAAGAAATGGAGGTATG
EW724142       --> GCGTGCTAGCTTGCCTTCCATGGGACGTGTCTGTAAGAAATGGAGGTATG
FD962858       --> ..................................................
FD963086       --> ..................................................

               551    -    601
UN09797        --> TTGTCCAGAGCAGAGAGTTTATTACCGTGAGAAGACTCGCCGGTATGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> TTGTCCAGAGCAGAGAGTTTATTACCGTGAGAAGACTCGCCGGTATGCTT
EW724142       --> TTGTCCAGAGCAGAGAGTTTATTACCGTGAGAAGACTCGCCGGTATGCTT
FD962858       --> ..................................................
FD963086       --> ..................................................

               601    -    651
UN09797        --> GAGGAGTGGCTATATGTCTTAACCATGGATGGTGGAGGGAAAGAGAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> GAGGAGTGGCTATATGTCTTAACCATGGATGGTGGAGGGAAAGAGAGCCA
EW724142       --> GAGGAGTGGCTATATGTCTTAACCATGGATGGTGGAGGGAAAGAGAGCCA
FD962858       --> ..................................................
FD963086       --> ..................................................

               651    -    701
UN09797        --> CTGGGAGGTGATGGACTGTCTGGGACATAAGCTATCATCTCTTCCACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> CTGGGAGGTGATGGACTGTCTGGGACATAAGCTATCATCTCTTCCACCAA
EW724142       --> CTGGGAGGTGATGGACTGTCTGGGACATAAGCTATCATCTCTTCCACCAA
FD962858       --> ....................gGGGACATAAGCTATCATCTCTTCCACCAA
FD963086       --> ....................gGGGACATAAGCTATCATCTCTTCCACCAA

               701    -    751
UN09797        --> TGCCTGGTCCTGTAAAGACAGGGTTTAAGGTGGTTGTGGTCGACGGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ..................................................
FD959318       <-- ..................................................
EW720427       <-- ..................................................
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> TGCCTGGTCCTGTAAAGACAGGGTTT........................
EW724142       --> TGCCTGGTCCTTTAAAGACAGGGTTTAAGGTGGTTGTGGTCGACGGGAAG
FD962858       --> TGCCTGGTCCTGTAAAGACAGGGTTTAAGGTGGTTGTGGTCGACGGGAAG
FD963086       --> TGCCTGGTCCTGTAAAGACAGGGTTTAAGGTGGTTGTGGTCGACGGGAAG

               751    -    801
UN09797        --> CTACTTGTGATTGCTGGTTGCGCTATGATCAATGGCTCTCATGTTGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- CTACTTGTGATTGCTGGTTGCGCTATGATCAATGGCTCTCATGTTGCATC
FD959318       <-- ................GTTGCGCTATGATCAATGGCTCTCATGTTGCATC
EW720427       <-- ....................CGCTATGATCAATGGCTCTCATGTTGCATC
FD959491       <-- ..................................................
EY909788       <-- ..................................................
EW716145       --> ..................................................
EW724142       --> CTACTTGTGATTGCTGGTTGCGCTATGATCAATGGCTCTCATGTTGCATC
FD962858       --> CTACTTGTGATTGCTGGTTGCGCTATGATCAATGGCTCTCATGTTGCATC
FD963086       --> CTACTTGTGATTGCTGGTTGCGCTATGATCAATGGCTCTCATGTTGCATC

               801    -    851
UN09797        --> TTCTGATGTTTATCAGTTTGATACTTGCCTCAACAGCTGGAGCAGACTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- TTCTGATGTTTATCAGTTTGATACTTGCCTCAACAGCTGGAGCAGACTAG
FD959318       <-- TTCTGATGTTTATCAGTTTGATACTTGCCTCAACAGCTGGAGCAGACTAG
EW720427       <-- TTCTGATGTTTATCAGTTTGATACTTGCCTCAACAGCTGGAGCAGACTAG
FD959491       <-- ...........................................AGACTAG
EY909788       <-- ..................................................
EW716145       --> ..................................................
EW724142       --> TTCTGATGTTTATCAGTTTGATACTTGCCTCAACAGCTGGAGCAGACTAG
FD962858       --> TTCTGATGTTTATCAGTTTGATACTTGCCTCAACAGCTGGAGCAGACTAG
FD963086       --> TTCTGATGTTTATCAGTTTGATACTTGCCTCAACAGCTGGAGCAGACTAG

               851    -    901
UN09797        --> CTGACTTGAAGGAGGCTCGTT-ATGACTTTGCTTGCGCTGAGGTGAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- CTGACTTGAAGGAGGCTCGCT-ATGACTTTGCTTGCGCTGAGGTGAATGG
FD959318       <-- CTGACTTGAAGGAGGCTCGTTTATGACTTTGCTTGCGCTGAGGTGAATGG
EW720427       <-- CTGACTTGAAGGAGGCTCGTT-ATGACTTTGCTTGCGCTGAGGTGAATGG
FD959491       <-- CTGACTTGAAGGAGGCTCGTT-ATGACTTTGCTTGCGCTGAGGTGAATGG
EY909788       <-- ..................................................
EW716145       --> ..................................................
EW724142       --> CTGACTTGAAGGAGGCTCGCT-ATGACTTTGCTTGCGCTGAGGTGAATGG
FD962858       --> CTGACTTGAAGGAGGCTCGTT-ATGACTTTGCTTGCGCTGAGGTGAATGG
FD963086       --> CTGACTTGAAGGAGGCTCGTT-ATGACTTTGCTTGCGCTGAGGTGAATGG

               901    -    951
UN09797        --> GCTTGTTTACGTGGTGGGAGGTCACGGTGGAAATGGTGAGAGTCTGTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- GCTTGTTTACGTGGTGGGAGGTCACGGTGGAGATGGTGAGAGTCTGTCTA  Raphanus sativus cv Early Scarlet Globe
FD959318       <-- GCTTGTTTACGTGGTGGGAGGTCACGGTGGAAATGGTGAGAGTCTGTCTA  Raphanus raphanistrum subsp. maritimus
EW720427       <-- GCTTGTTTACGTGGTGGGAGGTCACGGTGGAAATGGTGAGAGTCTGTCTA  Raphanus sativus var. oleiformis
FD959491       <-- GCTTGTTTACGTGGTGGGAGGTCACGGTGGAAATGGTGAGAGTCTGTCTA  Raphanus raphanistrum subsp. maritimus
EY909788       <-- ................GGAGGTCACGGTGGAGATGGTGAGAGTCTGTCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW716145       --> ..................................................  Raphanus sativus var. oleiformis
EW724142       --> GCTTGTTTACGTGGTGGGAGGTCACGGTGGAGATGGTGAGAGTCTGTCTA  Raphanus sativus cv Early Scarlet Globe
FD962858       --> GCTTGTTTACGTGGTGGGAGGTCACGGTGGAAATGGTGAGAGTCTGTCTA  Raphanus raphanistrum subsp. maritimus
FD963086       --> GCTTGTTTACGTGGTGGGAGGTCACGGTGGAAATGGTGAGAGTCTGTCTA  Raphanus raphanistrum subsp. maritimus

               951    -   1001
UN09797        --> GTGCGGAGGTTTACGATCCAGAGACGGGGATTCGGACTTTCATAGAGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- GTGCAGAGTTTTACGATCCAGAGACGGGGGTTTGGACTTTCATAGAGTCT  Raphanus sativus cv Early Scarlet Globe
FD959318       <-- GTGCGGAGGTTTACGATCCAGAGACGGGGATTCGGACTTTCATAGAGTCT  Raphanus raphanistrum subsp. maritimus
EW720427       <-- GTGCGGAGGTTTACGATCCAGAGACGGGGATTTGGACTTTCATAGAGTCT  Raphanus sativus var. oleiformis
FD959491       <-- GTGCGGAGGTTTACGATCCAGAGACGGGGATTCGGACTTTCATAGAGTCT  Raphanus raphanistrum subsp. maritimus
EY909788       <-- GTGCAGAGGTTTACGATCCAGAGACGGGGGTTTGGACTTTCATAGAGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW716145       --> ..................................................  Raphanus sativus var. oleiformis
EW724142       --> GTGCAGAGTTTTACGATCCAGAG...........................  Raphanus sativus cv Early Scarlet Globe
FD962858       --> GTGCGGAGGTTTACGATCCAGAGACGGGGATTCGGACTTTCATAGAGTCT  Raphanus raphanistrum subsp. maritimus
FD963086       --> GTGCGGAGGTTTACGATCCAGAGACGGGGATTCGGACTTTCATAGAGTCT  Raphanus raphanistrum subsp. maritimus

               1001   -   1051
UN09797        --> CTGAGGCGTCCGAGATGGGGATGTTTCGCTAGCGGCTTCAACGGGAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- CTGAGGCGTCCGAGATGGGGATGTTTCGCTAGCGGCTTCAACGGGAAGCT
FD959318       <-- TTGAGGCGTCCGAGATGGGGATGTTTCGCTAGCGGCTTCAACGGGAAGCT
EW720427       <-- TTGAGGCGTCCGAGATGGGGATGTTTCGCTAGCGGCTTCAACGGGAAGCT
FD959491       <-- TTGAGGCGTCCGAGATGGGGATGTTTCGCTAGCGGCTTCAACGGGAAGCT
EY909788       <-- CTGAGGCGTCCGAGATGGGGATGTTTCGCTAGCGGCTTCAACGGGAAGCT
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> CTGAGGCGTCCGAGATGGGGATGTTTCGCTAGCGGCTTCAACGGGAAGCT
FD963086       --> CTGAGGCGTCCGAGATGGGGATGTTTCGCTAGCGGCTTCAACGGGAAGCT

               1051   -   1101
UN09797        --> ATACGTGATGGGTGGGAGATCCAACTTCACCATTGGTAACTCAAAACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- ATACGTGATGGGTGGGAGATCCAACTTCACCATTGGTAACTCAAAACTTG
FD959318       <-- ATACGTGATGGGTGGGAGATCCAACTTCACCATTGGTAACTCAAAACTTG
EW720427       <-- ATACGTGATGGGTGGGAGATCCAACTTCACCATTGGTAACTCAAAACTTG
FD959491       <-- ATACGTGATGGGTGGGAGATCCAACTTCACCATTGGTAACTCAAAACTTG
EY909788       <-- ATACGTGATGGGTGG-AGATCCAACTTCACCATTGGTAACTCAAAACTTG
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> ATACGTGATGGGTGGGAGATCCAACTTCACCATTGGTAACTCAAAACTTG
FD963086       --> ATACGTGATGGGTGGGAGATCCAACTTCACCATTGGTAACTCAAAACTTG

               1101   -   1151
UN09797        --> TTGATGTGTACAACCCTCGGTGTGGTTCCTGGTGTGGCAGCAAAAACGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- TTGATGTGTACAACCCTCAGTGTGGCTCCTGGTGTGGCAGCAAAAACGGT
FD959318       <-- TTGATGTGTACAACCCTCGGTGTGGTTCCTGGTGTGGCAGCAAAAACGGT
EW720427       <-- TTGATGTGTACAACCCTCGGTGTGGTTCCTGGTGTGGCAGCAAAAACGGT
FD959491       <-- TTGATGTGTACAACCCTCGGTGTGGTTCCTGGTGTGGCAGCAAAAACGGT
EY909788       <-- TTGATGTGTACAACCCTCAGTGTGGCTCCTGGTGTGGCAGCAAAAACGGT
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> TTGATGTGTACAACCCTCGGTGTGGTTCCTGGTGTGGCAGCAAAAACGGT
FD963086       --> TTGATGTGTACAACCCTCGGTGTGGTTCCTGGTGTGGCAGCAAAAACGGT

               1151   -   1201
UN09797        --> GTAACTATGGTCACAGCTCATGTTGAAGTAGGAAAAAAACTATTCTGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- GTAACTATGGTCACAGCTCATGTTGAAGTAGGAAAAAAACTATTCTGTAT
FD959318       <-- GTAACTATGGTCACAGCTCATGTTGAAGTAGGAAAAAAACTATTCTGTAT
EW720427       <-- GTAACTATGGTCACAGCTCATGTTGAAGTAGGAAAAAAACTATTCTGTAT
FD959491       <-- GTAACTATGGTCACAGCTCATGTTGAAGTAGGAAAAAAACTATTCTGTAT
EY909788       <-- GTAACTATGGTCACAGCTCATGTTGAAGTAGGAAAAAAACTATTCTGTAT
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> GTAACTATGGTCACAGCTCATGTTGAAGTAGGAAAAAAACTATTCTGTAT
FD963086       --> GTAACTATGGTCACAGCTCATGTTGAAGTAGGAAAAAAACTATTCTGTAT

               1201   -   1251
UN09797        --> CGAGTGGAAGAACCAGAGGAAGATGTCTGTCTTCAATGCAGAAGAAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- CGAGTGGAAGAACCAGAGGAAGATGTCTGTCTTCAATGCAGAAGAAGATA
FD959318       <-- CGAGTGGAAGAACCAGAGGAAGATGTCTGTCTTCAATGCAGAAGAAGATA
EW720427       <-- CGAGTGGAAGAACCAGAGGAAGATGTCTGTTTTCAATGCAGAAGAAGATA
FD959491       <-- CGAGTGGAAGAACCAGAGGAAGATGTCTGTCTTCAATGCAGAAGAAGATA
EY909788       <-- CGAGTGGAAGAACCAGAGGAAGATGTCTGTCTTCAATGCAGAAGAAGATA
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> CGAGTGGAAGAACCAGAGGAAGATGTCTGTCTTCAATGCAGAAGAAGATA
FD963086       --> CGAGTGGAAGAACCAGAGGAAGATGTCTGTCTTCAATGCAGAAGAAGATA

               1251   -   1301
UN09797        --> CTTGGG-AAGTTGTGGCTCTACCGCTTTCAGGAAGCTCGAGGGCAGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- CTTGGG-AAGTTGTGGCTCTACCGCTTTCAGGAAGCTCGAGGGCAGGGTT
FD959318       <-- CTTGGG-AAGTTGTGGCTCTACCGCTTTCAGGAAGCTCGAGGGCAGGGTT
EW720427       <-- CTTGGG-AAGTTGTGGCTCTACCGCTTTCAGGAAGCTCGAGGGCAGGGTT
FD959491       <-- CTTGGG-AAGTTGTGGCTCTACCGCTTTCAGGAAGCTCGAGGGCAGGGTT
EY909788       <-- CTTGGG-AAGTTGTGGCGCTACCGCTTTCAGGAAGCTCGAGGGCAGGGTT
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> CTTGGGGAAGTTGTGGCTCTACCGCTTTCAG-AAGCTCGAGGGCAGGGTT
FD963086       --> CTTGGG-AAGTTGTGGCTCTACCGCTTTCAG-AAGCTCGAGGGCAGGGTT

               1301   -   1351
UN09797        --> TCAGTTTGGTAAGCTGAGTGGGAAGCTTCTTCTTTTTCCGTCTCAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- TCAGTTTGGAAAGCTGAGTGGGAAGCTTCTGCTTTTTCCGTCTCAAGAAG
FD959318       <-- TCAGTTTGGTAAGCTGAGTGGGAAGCTTCTTCTTTTTCCGTCTCAAGAAG
EW720427       <-- TCAGTTTGGTAAGCTGAGTGGGAAGCTTTTTCTTTTTCCGTCTCAAGAAG
FD959491       <-- TCAGTTTGGTAAGCTGAGTGGGAAGCTTTTTCTTTTTCCGTCTCAAGAAG
EY909788       <-- TCAGTTTGGTAAGCTGAGTGGGAAGCTTCTGCTTTTTCCGTCTCAAGAAG
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> TCAGTTTGGTAAGCTGAGTGGGAAGCTTCTTCTTTTTCCGTCTCAAGAAG
FD963086       --> TCAGTTTGGTAAGCTGAGTGGGAAGCTTCTTCTTTTTCCGTCTCAAGAAG

               1351   -   1401
UN09797        --> AGACTGGTCACAGCACTTTGCTGTACGATCCGGATGCTGCACCAGGCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- AGACTGGTCACAGCACTTTGCTGTACGATCCAGATGCTGCACCAGGCAGG
FD959318       <-- AGACTGGTCACAGCACTTTGCTGTACGATCCGGATGCTGCACCAGGCAGG
EW720427       <-- AGACTGGTCACAGCACTTTGCTGTACGATCCGGATGCTGCACCAGGCAGG
FD959491       <-- AGACTGGTCACAGCACTTTGCTGTACGATCCGGATGCTGCACCAGGCAGG
EY909788       <-- AGACTGGCCACAGCACTTTGCTGTACGATCCGGATGCTGCACCAGGCAGG
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> AGACTGGTCACAGCACTTTGCTGTACGATCCGGATGCTGCACCAGGCAG-
FD963086       --> AGACTGGTCACAGCACTTTGCTGTACGATCCGGATGCTGCACCAGGCAG-

               1401   -   1451
UN09797        --> CAGTGGAAAACATCTGAGATAAAACTGTCTGGTTCCTGCGTATGCAGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- CAGTGGAAAACATCTGAGATAAAACTGTCTGGTTCCTGTGTATGCAGCGT
FD959318       <-- CAGTGGAAAACATTTGAGATAAAACTGTCTGGTTCCTGCGTATGCAGCGT
EW720427       <-- CAGTGGAAAACATCTGAGATAAAACTGTCTGGTTCCTGCGTATGCAGCGT
FD959491       <-- CAGTGGAAAACATTTGAGATAAAACTGTCTGGTTCCTGCGTATGCAGCGT
EY909788       <-- CAGTGGAAAACATCTGAGATAAAACTGTCTGGTTCCTGCGTATGCAGCGT
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> CAGTG.............................................
FD963086       --> CAGTGGAAAACATCTGAGATAAAACTGTCTGGgttc..............

               1451   -   1501
UN09797        --> CACAATCATAGCCTGATTTTATGATGATCTTATTGA----TACCATTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- CACAATCATAGCCTGATTTTATGATGATCTTATTGA----TACCATTGTT
FD959318       <-- CACAATCATAGCCTGATTTTATGATGATCTTATTGA----TACCATTGTT
EW720427       <-- CACAATCATAGCCTGATTTTATGATGATCTTATTGA----TACCATTGTT
FD959491       <-- CACAATCATAGCCTGATTTTATGATGATCTTATTGA----TACCATTGTT
EY909788       <-- CACAATCATAGCCTGATTTTATGATGATCTTATTGAATGCTACTATTGTT
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> ..................................................
FD963086       --> ..................................................

               1501   -   1551
UN09797        --> GTCACATTTATCCATGATCCAAA-CTTAAAAGAGAGCGTTGAGTTTTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- GTCACATTTATCCATGATCCAAA-CTCAAAAGAGAGCGTTGAGTTTTACA
FD959318       <-- GTCACATTTATCCATGATCCAAA-CTTAAAAGAGAGCGTTGAGTTTTACA
EW720427       <-- GTCACATTTATCCATGATCCAAA-CTTAAAAGAGAGCGTTGAGTTTTACA
FD959491       <-- GTCACATTTATCCATGATCCAAA-CTTAAAAGAGAGCGTTGAGTTTTACA
EY909788       <-- GTCACATTTATCCATGATCCAAAACTCAAAAGAGAGCGTTGAGTTTTACA
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> ..................................................
FD963086       --> ..................................................

               1551   -   1601
UN09797        --> CTGATCTTTGATACAGTTTGAATAAAGTGGAGTGTGTGTGTTTTGTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- CTGATCTCCGATACAGTTTGAATAAAGTGGAGTGTGTGCGTTTTGTTTGA
FD959318       <-- CTGATCTTTGATACAGTTTGAATAAAGTGGAGTGTGTGTGTTTTGTTTG.
EW720427       <-- CTGATCTTTGATACAGTTTGAATAAAGTGGAGTGTGTGTGTTTTGTT...
FD959491       <-- CTGATCTTTGATACAGTTTGAATAAAGTGGAGTGTGTGTGTTTTGTTTG.
EY909788       <-- CTGATCTCAGATACAGTTTGAATAAAGTGGAGTGTGTGCGTTTTGTTTGA
EW716145       --> ..................................................
EW724142       --> ..................................................
FD962858       --> ..................................................
FD963086       --> ..................................................

               1601   -   1651
UN09797        --> CACTCTCTATCCGTTTGTTCCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
EW728672       <-- CACTCTCTATCCGTTTGTTCCTTCC
FD959318       <-- .........................
EW720427       <-- .........................
FD959491       <-- .........................
EY909788       <-- CACTCTCTATCCGTTTGTTCCTTgt
EW716145       --> .........................
EW724142       --> .........................
FD962858       --> .........................
FD963086       --> .........................