1      -     51
UN09812        --> GCGTAAATCACACC-AAATCCCTTTAGATTGATGGTTCCTCCTTCATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- GCGTAAATCACACC-AAATCCCTTTAGATTGATGGTTCCTCCTTCATTCT  Raphanus raphanistrum subsp. maritimus
EW725485       <-- ..aTAAATCACACC-AAATCCCTTTAGATTGATGGTTTCTCCTTCATTCT  Raphanus sativus cv Early Scarlet Globe
EY905446       <-- gcaTAAATCACACC-AAATCCCTTTAGATTGATGGTTCCTCCTTCGTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932615       <-- ...TAAATCACACC-AAATC--CTTAGATTGATGGTTCCTCTTTCATTCT  Raphanus sativus var. oleiformis
EW715853       <-- ....AAATCACACCCAAATCCCTTTAGATTGATGGTTCCTCCTTCATTCT  Raphanus sativus var. oleiformis
FD988096       <-- .........................AGATTGATGGTTCCTCCTTCATTCT  Raphanus raphanistrum subsp. landra
EV552396       <-- .........................gGATTGATGGTTCCTCCTTCATTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543499       <-- .........................gGATTGATGGTTCCTCCTTCGTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974319       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913700       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542212       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753445       --> GCGTAAATCACACC-AAATCCCTTTAGATTGATGGTTCCTCCTTCATTCT  Raphanus raphanistrum subsp. maritimus
EW730028       --> gcaTAAATCACACC-AAATCCCTTTAAATTGATGGTTTCTCCTTCATTCT  Raphanus sativus cv Early Scarlet Globe
EY901883       --> gcaTAAATCACACC-AAATCCCTTTAGATTGATGGTTCCTCCTTCGTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969817       --> ...................CCCTTTAGATTGATGGTTCCTCCTTCGTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538341       --> .........................AGATTGATGGTTCCTCCTTCGTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539317       --> .........................gGATTGATGGTTCCTCCTTCGTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720349       --> .........................................CTTCATTCT  Raphanus sativus var. oleiformis
EV547320       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               51     -    101
UN09812        --> TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
EW725485       <-- TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
EY905446       <-- TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
EY932615       <-- TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
EW715853       <-- TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
FD988096       <-- TATTATTTGCTGATTT-ACAAACACAAAATCTATAAATATCAATAATCAA
EV552396       <-- TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
FD543499       <-- TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
FD974319       <-- ..TTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
EY913700       <-- ...ataTTGCTGATTT-ACAAACACAAAATCTATAAATATCAATAATCAA
FD542212       <-- ............ATTTTACAAACACAAAATCTATACATATCAATAATCAA
EX753445       --> TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
EW730028       --> TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
EY901883       --> TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
FD969817       --> TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
FD538341       --> TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
FD539317       --> TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
EW720349       --> TATTATTTGCTGATTTTACAAACACAAAATCTATAAATATCAATAATCAA
EV547320       --> ........................................CAATAATCAA

               101    -    151
UN09812        --> TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EW725485       <-- TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EY905446       <-- TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EY932615       <-- TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EW715853       <-- TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
FD988096       <-- TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EV552396       <-- TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
FD543499       <-- TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
FD974319       <-- TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EY913700       <-- TATATAATATGAAATTAATGACACAAATCCATGCCTTGAATCTTGATTGA
FD542212       <-- TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EX753445       --> TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EW730028       --> TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EY901883       --> TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
FD969817       --> TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
FD538341       --> TATATAATATGAAATTAATGACCCAAATCCCTGTCTTGAATCTTGATTGA
FD539317       --> TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EW720349       --> TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA
EV547320       --> TATATAATATGAAATTAATGACACAAATCCATGTCTTGAATCTTGATTGA

               151    -    201
UN09812        --> GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. maritimus
EW725485       <-- GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus sativus cv Early Scarlet Globe
EY905446       <-- GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932615       <-- GACTTAAGTGAACAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus sativus var. oleiformis
EW715853       <-- GACTTAAGTGAACAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus sativus var. oleiformis
FD988096       <-- GACTTAAGTGAACAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. landra
EV552396       <-- GACTTAAGTGAACAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543499       <-- GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974319       <-- GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913700       <-- GACTTAAGTGAACAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542212       <-- GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753445       --> GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. maritimus
EW730028       --> GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus sativus cv Early Scarlet Globe
EY901883       --> GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969817       --> GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538341       --> GACTTAAGTGAAAAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539317       --> GACTTAAGTGAAGAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720349       --> AACTTAAGTGAACAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus sativus var. oleiformis
EV547320       --> GACTTAAGTGAACAGAGATGCTGCATCTCTGTAGGTTCTTCTTTGGTTAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN09812        --> TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EW725485       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EY905446       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EY932615       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EW715853       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
FD988096       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EV552396       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
FD543499       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
FD974319       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EY913700       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
FD542212       <-- TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EX753445       --> TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EW730028       --> TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EY901883       --> TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
FD969817       --> TAAAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
FD538341       --> TAAAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
FD539317       --> TAGAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EW720349       --> TAAAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT
EV547320       --> TAAAAGCTGCATGATGAAGGGTGATGCTTTCTTGGTTGTTGTTGAAAGTT

               251    -    301
UN09812        --> GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTT--GGGGG
EW725485       <-- GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
EY905446       <-- GTGGAc............................................
EY932615       <-- GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
EW715853       <-- GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
FD988096       <-- GTGGAGTTGTTGTTGTTGTCACAAACATGATGAGGATACTGTTGCTTGGG
EV552396       <-- GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
FD543499       <-- GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
FD974319       <-- GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
EY913700       <-- GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
FD542212       <-- GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
EX753445       --> GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTG--GGGG
EW730028       --> GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
EY901883       --> GTGGAc............................................
FD969817       --> GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
FD538341       --> GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
FD539317       --> GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
EW720349       --> GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG
EV547320       --> GTGGAGTTGTTGTTGTTGTCATAAACATGATGAGGATACTGTTGCTTGGG

               301    -    351
UN09812        --> GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATGGTTATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATGGTTATGTT  Raphanus raphanistrum subsp. maritimus
EW725485       <-- GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATGGTTATGTT  Raphanus sativus cv Early Scarlet Globe
EY905446       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932615       <-- GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATTGTTATATT  Raphanus sativus var. oleiformis
EW715853       <-- GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATTGTTATATT  Raphanus sativus var. oleiformis
FD988096       <-- GATGAGGGAACCGAACCTCCCTTGCTTCTTCTGATGAGAATTGTTATATT  Raphanus raphanistrum subsp. landra
EV552396       <-- GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATTGTTATATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543499       <-- GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATGGTTATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974319       <-- GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATGGTTATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913700       <-- GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATTGTTATATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542212       <-- GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATGGTTATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753445       --> GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATGGTTATGTT  Raphanus raphanistrum subsp. maritimus
EW730028       --> GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATGGTTATGTT  Raphanus sativus cv Early Scarlet Globe
EY901883       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969817       --> GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATGGTTATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538341       --> GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAAAATGGTTATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539317       --> GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATGGTTATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720349       --> GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAAAATTGTTATATT  Raphanus sativus var. oleiformis
EV547320       --> GATGAGGGAACCGAATCTCCCTTGCTTCTTCTGATGAGAATTGTTATATT  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN09812        --> GTTTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- GTTTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
EW725485       <-- GTTTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
EY905446       <-- ..................................................
EY932615       <-- GTTTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
EW715853       <-- GTTTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
FD988096       <-- GTTTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
EV552396       <-- GTTTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
FD543499       <-- GTTTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
FD974319       <-- GTTTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
EY913700       <-- GATTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
FD542212       <-- GTTTCCTTCTTGGCTGAGAACATCTTGGGATGAACACTCCTGTCCCTTTG
EX753445       --> GTTTCCTTCTTGGCTGAAAACATCTTGGGATGAACACTCCTGTCCCTTTG
EW730028       --> GTTTCCTTCTTGGCTGAAAACATCTTGGGATGAACACTCCTGTCCCTTTG
EY901883       --> ..................................................
FD969817       --> GTTTCCTTCTTGGCTGAAAACATCTTGGGATGAACACTCCTGTCCCTTTG
FD538341       --> GTTTCCTTCTTGGCTGAGAACATCTTGGGAAGAACACTCCTGTCCCTTTG
FD539317       --> GTTTCCTTCTTGGCTGAAAACATCTTGGGATGAACACTCCTGTCCCTTTG
EW720349       --> GTTTCCTTCTTGGCTGAAAACATCTTGGGATGAACACTCCTGTCCCTTTG
EV547320       --> GTTTCCTTCTTGGCTGAAAACATCTTGGGATGAACACTCCTGTCCCTTTG

               401    -    451
UN09812        --> CTCTCTCTAACTTGGTTGTAATTCTGCTCATGGTATATCATATACGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- CTCTCTCTAACTTGGTTGTAATTCTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. maritimus
EW725485       <-- CTCTCTCTAAC----TTGTAATTCTGCTCATGGTATATCATATACGGTGT  Raphanus sativus cv Early Scarlet Globe
EY905446       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932615       <-- CTCTCTCTAACTTGGTTGTAATTTTGCTCATGGTATATCATATACGGTGT  Raphanus sativus var. oleiformis
EW715853       <-- CTCTCTCTAACTTGGTTGTAATTTTGCTCATGGTATATCATATACGGTGT  Raphanus sativus var. oleiformis
FD988096       <-- CTCTCTCTAACTTGGTTGTAATTTTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. landra
EV552396       <-- CTCTCTCTAACTTGGTTGTAATTTTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543499       <-- CTCTCTCTAACTTGGTTGTAATTCTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974319       <-- CTCTCTCTAACTTGGTTGTAATTCTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913700       <-- CTCTCTCTAACTTGGTTGTAATTTTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542212       <-- CTCTCTCTAACTTGGTTGTAATTCTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753445       --> CTCTCTCTAACTTGGTTGTAATTCTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. maritimus
EW730028       --> CTCTCTCTAACTTG----TAATTCTGCTCATGGTATATCATATACGGTGT  Raphanus sativus cv Early Scarlet Globe
EY901883       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969817       --> CTCTCTCTAACTTGGTTGTAATTCTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538341       --> CTCTCTCTAACTTGGTTGTAATTCTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539317       --> CTCTCTCTAACTTGGTTGTAATTCTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720349       --> CTCTCTCTAACTTGGTTGTAATTTTGCTCATGGTATATCATATACGGTGT  Raphanus sativus var. oleiformis
EV547320       --> CTCTCTCTAACTTGGTTGTAATTTTGCTCATGGTATATCATATACGGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN09812        --> TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
EW725485       <-- TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
EY905446       <-- ..................................................
EY932615       <-- TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
EW715853       <-- TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
FD988096       <-- TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
EV552396       <-- TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
FD543499       <-- TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
FD974319       <-- TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
EY913700       <-- TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
FD542212       <-- TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
EX753445       --> TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
EW730028       --> TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
EY901883       --> ..................................................
FD969817       --> TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGG..
FD538341       --> TGCTGATGCTTGGTAATTTTCTCTGAACAAACCCTGGAATGAaa......
FD539317       --> TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
EW720349       --> TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG
EV547320       --> TGCTGATGCTTGGTAGTTTTCTCTGAACAAACCCTGGAATGAGACAGGAG

               501    -    551
UN09812        --> AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAGATTG
EW725485       <-- AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAGATTG
EY905446       <-- ..................................................
EY932615       <-- AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAATAGATTG
EW715853       <-- AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAATAGATTG
FD988096       <-- AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAGATTG
EV552396       <-- AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAGATTG
FD543499       <-- AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAGATTG
FD974319       <-- AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAGATTG
EY913700       <-- AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAGATTG
FD542212       <-- AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAGATTG
EX753445       --> AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAAATTG
EW730028       --> AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGAT..........
EY901883       --> ..................................................
FD969817       --> ..................................................
FD538341       --> ..................................................
FD539317       --> AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAGATTG
EW720349       --> AAGAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAATAGATTG
EV547320       --> AAAAAAGTGAGATAGGGTTCTGTTCATCTTCATCTGTGATTAAGAAATTG

               551    -    601
UN09812        --> ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCCAGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCCAGGTC
EW725485       <-- ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCCAGGTC
EY905446       <-- ..................................................
EY932615       <-- ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCCAGGTC
EW715853       <-- ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCCAGGTC
FD988096       <-- ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCTAGGTC
EV552396       <-- ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCTAGGTC
FD543499       <-- ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCCAGGTC
FD974319       <-- ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCCAGGTC
EY913700       <-- ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCTAGGTC
FD542212       <-- ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCCAGGTC
EX753445       --> ATTTGTTTGCTTATGTCTGCATAGAAGACATCATCATCGAGCTCCAGGTC
EW730028       --> ..................................................
EY901883       --> ..................................................
FD969817       --> ..................................................
FD538341       --> ..................................................
FD539317       --> ATTTGTTTGCTTATGTCTGC..............................
EW720349       --> ATTTGTTTGCTTATGTCTGCAT............................
EV547320       --> ATTTGTTTGCTTATGTCTGCATAGAA........................

               601    -    651
UN09812        --> CATAGCAACTTCCATGGCCATATATCTAGCCTTTCAAGAAGTGTTTTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- CATAGCAACTTCCATGGCCATATATCTAGCCTTTCAAGAAGTGTTTTAAG
EW725485       <-- CATAGCAACTTCCATGGCCATATATCTAGCCTTTCAAGAAGTGTGTTAAG
EY905446       <-- ..................................................
EY932615       <-- CATAGCAACTTCCATGGCCATATATCTAGCCTTTCAAGAAGTGTTTTAAG
EW715853       <-- CATAGCAACTTCCATGGCCATATATCTAGCCTTTCAAGAAGTGTTTTAAG
FD988096       <-- CATAGCAACTTCCATGGCCATATATCTAGCCTTTCAAGAAGTGTTTTAAG
EV552396       <-- CATAGCAACTTCCATGGCCATATATCTAGCCTTTCAAGAAGTGTTTTAAG
FD543499       <-- CATAGCAACTTCCATGGCCGTATATCTAGCCTTTCAAGAAGTGTTTTAAG
FD974319       <-- CATAGCAACTTCCATGGCCGTATATCTAGCCTTTCAAG............
EY913700       <-- CATAGCAACTTCCATGGCCATATATCTAGCCTTTCAAGAAGTGTTTTAAG
FD542212       <-- CATAGCAACTTCCATGGCCGTATATCTAGCCTTTCAAGAAGTGTTTTAAG
EX753445       --> CATAGCAACTTCCATGGCCATATATCTAGCCTTTCAAGAAGTGTTTTAAG
EW730028       --> ..................................................
EY901883       --> ..................................................
FD969817       --> ..................................................
FD538341       --> ..................................................
FD539317       --> ..................................................
EW720349       --> ..................................................
EV547320       --> ..................................................

               651    -    701
UN09812        --> AAAATATGGTTTAAGTGGAGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~
EX749854       <-- AAAATATGGTTTAAGTGGcc....
EW725485       <-- AAAATATGGTTTAAGTGGAGTTCC
EY905446       <-- ........................
EY932615       <-- AAAATATGGTTTcc..........
EW715853       <-- AAAATATGGTTTAAGTGGAGTTCC
FD988096       <-- AAAATATGGTTTAAGTGGAGTTCC
EV552396       <-- AAAATATGGTTTAAGTGGAGTTCC
FD543499       <-- AAAATATGGTTTAAGTGcc.....
FD974319       <-- ........................
EY913700       <-- AAAATATGGTTTAAGTGGAGTTC.
FD542212       <-- AAAATATGGTTTAAGTGGAGTcc.
EX753445       --> AAAATATGGTTTAAGTGGcc....
EW730028       --> ........................
EY901883       --> ........................
FD969817       --> ........................
FD538341       --> ........................
FD539317       --> ........................
EW720349       --> ........................
EV547320       --> ........................