1      -     51
UN09816        --> GGGACATTCTTTTAGATTGATAAGAGAAAACAATAAGGTTTCTACATATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- .GGACATTCTTTTAGATTGATAAGAGAAAACAATAAGGTTTCTACATATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546516       <-- .GGACATTCTTTTAGATTGATAAGAGAAAACAATAAGGTTTCTACATATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760282       <-- .GGACATTCTTTTAGATTGATAAGAGAAAACAAAAAGGTTTCTACATATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944374       <-- .GGACATTCTTTTAGATTGATAAGAGAAAACAAAAAGGTTTCTACATATA  Raphanus sativus cv Rat-Tail Radish #3870
FD544887       <-- .GGACATTCTTTTAGATTGATAAGAGAAAACAATAAGGTTTCTACATATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917887       <-- ...........................................ACATATA  Raphanus raphanistrum subsp. landra
EY913899       --> GGGACATTCTTTTAGATTGATAAGAGAAAACAATAAGGTTTCTACATATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548382       --> .GGACATTCTTTTAGATTGATAAGAGAAAACAATAAGGTTTCTACATATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551419       --> .GGACATTCTTTTAGATTGATAAGAGAAAACAATAAGGTTTCTACATATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756484       --> .GGACATTCTTTTAGATTGATAAGAGAAAACAAAAAGGTTTCTACATATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921809       --> .GGACATTCTTTTAGATTGATAAGAGAAAACAAAAAGGTTTCTACATATA  Raphanus raphanistrum subsp. landra
EY948727       --> .GGACATTCTTTTAGATTGATAAGAGAAAACAAAAAGGTTTCTACATATA  Raphanus sativus cv Rat-Tail Radish #3870
FD548742       --> .GGACATTCTTTTAGATTGATAAGAGAAAACAATAAGGTTTCTACATATA  Raphanus raphanistrum subsp. raphanistrum (NY)

               51     -    101
UN09816        --> ACAGAAACAAAAAAA-GAAGTTCAGATAA---AAAAAAAAA--CATAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- ACAGAAACAAAAAAA-GAAGTTCAGATAA---AAAAAAAAA--CATAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546516       <-- ACAGAAACAAAAAAA-GAAGTTCAGATAA---AAAAAAAAAAACATAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760282       <-- ACAGAAACAAAAAAAAGAAGTTCAGATAA---AAAAAA--A--CATAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944374       <-- ACAGAAACAAAAAAA-GAAGTTCAGATAAGAAAAAAAAAAA--CATAATT  Raphanus sativus cv Rat-Tail Radish #3870
FD544887       <-- ACAGAAACAAAAAAA-GAAGTTCAGATAA---AAAAAAAAA-ACATAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917887       <-- ACAGAAACAAAAAAA-GAAGTTCAGATAA---AAAAAA--A--CATAATT  Raphanus raphanistrum subsp. landra
EY913899       --> ACAGAAACAAAAAAA-GAAGTTCAGATAA---AAAAAAAAA--CATAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548382       --> ACAGAAACAAAAAAA-GAAGTTCAGATAA---AAAAAAAAA--CATAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551419       --> ACAGAAACAAAAAAA-GAAGTTCAGATAA---AAAAAAAAAAACATAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756484       --> ACAGAAACAAAAAAAAGAAGTTCAGATAA---AAAAAAA----CATAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921809       --> ACAGAAACAAAAAAA-GAAGTTCAGATAA---AAAAAAA----CATAATT  Raphanus raphanistrum subsp. landra
EY948727       --> ACAGAAACAAAAAAA-GAAGTTCAGATAAGAAAAAAAAAAA--CATAATT  Raphanus sativus cv Rat-Tail Radish #3870
FD548742       --> ACAGAAACAAAAAAA-GAAGTTCAGATAA---AAAAAAAAA-ACATAATT  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN09816        --> TTTTTTCTCAATTTCTTAAATCATGAAGTGTTTTATTTCAGTTCTCGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- TTTTTTCTCAATTTCTTAAATCATGAAGTGTTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546516       <-- TTTTTTCTCAATTTCTTAAATCATGAAGTGTTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760282       <-- TTTTTTCTCAATTTCTTAAATCATGAAGTGTTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944374       <-- TTTTTTCTCAATTTCTTAA-TCATGAAGTATTTTATTTCGGTTCTCGTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD544887       <-- TTTTTTCTCAATTTCTTAAATCATGAAGTGTTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917887       <-- TTTTTTCTCAATTTCTTAAATCATGAAGTATTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. landra
EY913899       --> TTTTTTCTCAATTTCTTAAATCATGAAGTGTTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548382       --> TTTTTTCTCAATTTCTTAAATCATGAAGTGTTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551419       --> TTTTTTCTCAATTTCTTAAATCATGAAGTGTTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756484       --> TTTTTTCTCAATTTCTTAAATCATGAAGTGTTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921809       --> TTTTTTCTCAATTTCTTAAATCATGAAGTATTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. landra
EY948727       --> TTTTTTCTCAATTTCTTAA-TCATGAAGTATTTTATTTCGGTTCTCGTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD548742       --> TTTTTTCTCAATTTCTTAAATCATGAAGTGTTTTATTTCAGTTCTCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN09816        --> TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
EV546516       <-- TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
EX760282       <-- TATGCGCTCTCATGTTTTACGTCTCGAACATTGTGCAAGAAGTGAATGGC
EY944374       <-- TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
FD544887       <-- TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
EY917887       <-- TATGCGCTTTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
EY913899       --> TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
EV548382       --> TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
EV551419       --> TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
EX756484       --> TATGCGCTCTCATGTTTTACGTCTCGAACATTGTGCAAGAAGTGAATGGC
EY921809       --> TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
EY948727       --> TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC
FD548742       --> TATGCGCTCTCATGTTTTACGTTTCGAACATTGTGCAAGAAGTGAATGGC

               201    -    251
UN09816        --> GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
EV546516       <-- GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
EX760282       <-- GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
EY944374       <-- GTTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
FD544887       <-- GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
EY917887       <-- GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
EY913899       --> GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
EV548382       --> GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
EV551419       --> GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
EX756484       --> GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
EY921809       --> GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
EY948727       --> GTTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA
FD548742       --> GCTTGTGACCGGTTAGTAAGGACTCCTGGAAAATGTGGCCCTGATAAAAA

               251    -    301
UN09816        --> CAAGACGTGCCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- CAAGACGTGCCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG
EV546516       <-- CAAGACGTGCCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG
EX760282       <-- CAAGACGTGTCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG
EY944374       <-- CATGACGTGCCAGGTTGATAAGAAGATCAAATATTTGAGGTGCAACTGTG
FD544887       <-- CAAGACGTGCCAGGTTGATAAGAAGATCAAATATTTGAGGTGCAACTGTG
EY917887       <-- CAAGACGTGCCAGGTTGATAAGAAGATCAAATTTTTGAGGGGCAACTGTG
EY913899       --> CAAGACGTGCCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG
EV548382       --> CAAGACGTGCCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG
EV551419       --> CAAGACGTGCCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG
EX756484       --> CAAGACGTGTCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG
EY921809       --> CAAGACGTGCCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG
EY948727       --> CATGACGTGCCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG
FD548742       --> CAAGACGTGCCAGGTTGATAAGAAGATCAAATATCTGAGGTGCAACTGTG

               301    -    351
UN09816        --> CAGATATCTTTTATGAAAAGAAGCACCAGCGTGACTGCTTTTGTCTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- CAGATATCTTTTATGAAAAGAAGCACCGGCGTGACTGCTTTTGTCTTATT
EV546516       <-- CAGATATCTTTTATGAAAAGAAGCACCAGCGTGACTGCTTTTGTCTTATT
EX760282       <-- CAGATATCTTTTATGAAAAGAAGCATCAGCGTGACTGCTTTTGTCTTATT
EY944374       <-- CAGATATCTTTTATGAAAAGAAGCACCAGCGTGACTGCTTTTGTCTTATT
FD544887       <-- CAGATATCTTTTATGAAAAGAAGCACCAGCGTGACTGCTTTTGTCTTATT
EY917887       <-- CAG...............................................
EY913899       --> CAGATATCTTTTATGAAAAGAAGCACCAGCGTGACTGCTTTTGTCTTATT
EV548382       --> CAGATATCTTTTATGAAAAGAAGCACCGGCGTGACTGCTTTTGTCTTATT
EV551419       --> CAGATATCTTTTATGAAAAGAAGCACCAGCGTGACTGCTTTTGTCTTATT
EX756484       --> CAGATATCTTTTATGAAAAGAAGCATCAGCGTGACTGCTTTTGTCTTATT
EY921809       --> CAGATATCTTTTATGAAAAGAAGCACCAGCGTGACTGCTTTTGTCTTATT
EY948727       --> CAGATATCTTTTATGAAAAGAAGCACCAGCGTGACTGCTTTTGTCTTATT
FD548742       --> CAGATATCTTTTATGAAAAGAAGCACCAGCGTGACTGCTTTTGTCTTATT

               351    -    401
UN09816        --> AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
EV546516       <-- AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
EX760282       <-- AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
EY944374       <-- AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
FD544887       <-- AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
EY917887       <-- ..................................................
EY913899       --> AAGGAACCTTGTGGTGAAGAATAAAGGGAACAAGGCTGTTATGGCTACAG
EV548382       --> AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
EV551419       --> AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
EX756484       --> AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
EY921809       --> AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
EY948727       --> AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG
FD548742       --> AAGGAACCTTGTGGTGAAGAATAAAGAGAACAAGGCTGTTATGGCTACAG

               401    -    451
UN09816        --> AAACTTCTTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- AAACTTCTTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546516       <-- AAACTTCTTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760282       <-- AAACTTCCTGGCCGACAATACATTATTTTTAGTATTACAAATAAAATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944374       <-- AAACTTCCTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA  Raphanus sativus cv Rat-Tail Radish #3870
FD544887       <-- AAACTTCTTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917887       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY913899       --> AAACTTCTTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548382       --> AAACTTCTTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551419       --> AAACTTCTTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756484       --> AAACTTCCTGGCCGACAATACATTATTTTTAGTATTACAAATAAAATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921809       --> AAACTTCCTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA  Raphanus raphanistrum subsp. landra
EY948727       --> AAACTTCCTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA  Raphanus sativus cv Rat-Tail Radish #3870
FD548742       --> AAACTTCTTGGCCGACAATACATTATTTTTAGTCTTACAAATAAAATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN09816        --> TTTACTAATTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- TTTACTAATTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA
EV546516       <-- TTTACTAATTAATAATTAAGCGATGAGTGATAAGAGTTCTTGTGTTAAAA
EX760282       <-- TTTACTAATTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA
EY944374       <-- TTTACTAGTTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA
FD544887       <-- TTTACTAATTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA
EY917887       <-- ..................................................
EY913899       --> TTTACTAATTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA
EV548382       --> TTTACTAATTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA
EV551419       --> TTTACTAATTAATAATTAAGCGATGAGTGATAAGAGTTCTTGTGTTAAAA
EX756484       --> TTTACTAATTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA
EY921809       --> TTTACTAATTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA
EY948727       --> TTTACTAGTTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA
FD548742       --> TTTACTAATTAATAATTAAGCGATGAGTGAGAAGAGTTCTTGTGTTAAAA

               501    -    551
UN09816        --> ATTAGTTACTTTTAACGAATATCCAATTCGATTAAAATAAATATTTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544061       <-- ATTAGTTACTTTTAACGAATATCCAATTCGATTAAAATAAATATTTTTTA
EV546516       <-- ATTAGTTACTTTTAACGAATATCCAATTCGATT.................
EX760282       <-- ATTAGTTACTTTTAACGAATATCCAATTCGATTAAAATAAATATTTTTTA
EY944374       <-- ATTAGTTACTTTTAACGAATATCCAATTCGAT..................
FD544887       <-- ATTAGTTACTTTTAACGAATATCCAATTCGAT..................
EY917887       <-- ..................................................
EY913899       --> ATTAGTTACTTTTAACGAATATCCAATTCGAT..................
EV548382       --> ATTAGTTACTTTTAACGAATATCCAATTCGATTAAAATAAATATTTTTTA
EV551419       --> ATTAGTTACTTTTAACGAATATCCAATTCGATT.................
EX756484       --> ATTAGTTACTTTTAACGAATATCCAATTCGATTAAAATAAATATTTTTTA
EY921809       --> ATTAGTTACTTTTAGCGAATATCCAATTCGAT..................
EY948727       --> ATTAGTTACTTTTAACGAATATCCAATTCGAT..................
FD548742       --> ATTAGTTACTTTTAACGAATATCCAATTCGAT..................

               551    -    601
UN09816        --> ATAATAAGATCCACAAA
                   ~~~~~~~~~~~~~~~~~
EV544061       <-- ATAATAAGATCCAC...
EV546516       <-- .................
EX760282       <-- ATAATAAGATCCACAAA
EY944374       <-- .................
FD544887       <-- .................
EY917887       <-- .................
EY913899       --> .................
EV548382       --> ATAATAAGATCCAC...
EV551419       --> .................
EX756484       --> ATAATAAGATCCACAAA
EY921809       --> .................
EY948727       --> .................
FD548742       --> .................