Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN09855

               1      -     51
UN09855        --> GCAATGTAAAAAGTCCCAAAACAAAAATTGCAATACACAATCAAAAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- ............................TGCAATACACAATCAAAAGACA
FD956359       <-- ..................................................
FD948574       <-- ..................................................
EY930999       <-- ..................................................
EY924666       <-- ..................................................
EY949090       <-- ..................................................
FD944336       --> GCAATGTAAAAAGTCCCAAAACAAAAATTGCAATACACAATCAAAAGACA
EY944670       --> ............GTCCCAAAACAAAAATTGCAATACACAATCAAAAGACA
EY920279       --> ..................................................
EY935062       --> ..................................................

               51     -    101
UN09855        --> TTCAAATGGAAGAAGAGATACAAAAAAAAAAGTTTCGAGATTGTTTCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- TTCAAATGGAAGAAGAGATACAAAAAAAAA-GTTTCGAGATTGTTTCTCG
FD956359       <-- ..................................................
FD948574       <-- ..................................................
EY930999       <-- ..................................................
EY924666       <-- ..................................................
EY949090       <-- ..................................................
FD944336       --> TTCAAATGGAAGAAGAGATACAAAAAAAAAAGTTTCGAGATTGTTTCTCG
EY944670       --> TTCAAATGGAAGAAGAGATACAAAAAAAAAAGTTTCGAGATTGTTTCTCG
EY920279       --> ..................................................
EY935062       --> ..................................................

               101    -    151
UN09855        --> GTTAGTATGGTCATCAAAGAAATACACGATTTATCTAATACATATGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- GTTAGTATGGTCATCAAAGAAATACACGATTTATCTAATACATATGGAAA
FD956359       <-- ................................................AA
FD948574       <-- ..................................................
EY930999       <-- ..................................................
EY924666       <-- ..................................................
EY949090       <-- ..................................................
FD944336       --> GTTAGTATGGTCATCAAAGAAATACACGATTTATCTAATACATATGGAAA
EY944670       --> GTTAGTATGGTCATCAAAGAAATACACGATTTATCTAATACATATGGAAA
EY920279       --> .......................ACACGATTTATCTAATACATATGGAAA
EY935062       --> ..................................................

               151    -    201
UN09855        --> CAACAATCGATCATTCATTCATTCATTCAACAAGAAGAACAAGCATATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- CAACAATCGATCATTCATTCATTCATTCAACAAGAAGAACAAGCATATTC
FD956359       <-- CAACAATCGATCATTCATTCATTCATTCAACAAGAAGAACAAGCATATTC
FD948574       <-- ..................................................
EY930999       <-- ..................................................
EY924666       <-- ..................................................
EY949090       <-- ..................................................
FD944336       --> CAACAATCGATCATTCATTCATTCATTCAACAAGAAGAACAAGCATATTC
EY944670       --> CAACAATCGATCATTCATTCATTCATTCAACAAGAAGAACAAGCATATTC
EY920279       --> CAACAATCGATCATTCATTCATTCATTCAACAAGAAGAACAAGCATATTC
EY935062       --> ..................................................

               201    -    251
UN09855        --> TTTTTTTTTAGGTAGAGTAAGAAGAGCCCTCACCTACTCCTTTGGAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- TTTTTTTTTAGGTAGAGTAAGAAGAGCCCTCACCTACTCCTTTGGAAGTA
FD956359       <-- TTTTTTTTTAGGTAGAGTAAGAAGAGTCCTCACCTACTCCTTTGGAAGTA
FD948574       <-- .......................GAGCCCTCACCTACTCCTTTGGAAGTA
EY930999       <-- ....................................CTCCTTTGGAAGTG
EY924666       <-- ..................................................
EY949090       <-- ..................................................
FD944336       --> TTTTTTTT-AGGTAGAGTAAGAAGAGCCCTCACCTACTCCTTTGGAAGTA
EY944670       --> TTTTTTTTTAGGTAGAGTAAGAAGAGCCCTCACCTACTCCTTTGGAAGTA
EY920279       --> TTTTTTTTTAGGTAGAGTAAGAAGAGCCCTCACCTACTCCTTTGGAAGTA
EY935062       --> ..................AAGAAGAGCCCTCACCTACTCCTTTGGAAGTA

               251    -    301
UN09855        --> ATACCTCTGCAACCAGCACCTTCATGCCATTCAAGCATGATCTCAATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- GTACCTCTGCAACCAGCACCTTCATGCCATTCAAGCATGATCTCAATCTC
FD956359       <-- ATACCTCTGCAACCAGCACCTTCATGCCATTCAAGCATGATCTCAATCTC
FD948574       <-- ATACCTCTGCAACCAGCACTTTCATGCCATTCAAGCATGATCTCGATCTC
EY930999       <-- ATACCTCTGCAACCAGCACCTTCATGCCATTCAAGCATGATCTCGATCTC
EY924666       <-- ......CTGCAACCAGCACCTTCATGCCAT-CAAGCATGATCTCAATCTC
EY949090       <-- ..................................................
FD944336       --> ATACCTCTGCAACCAGCACCTTCATGCCATTCAAGCATGATCTCGATCTC
EY944670       --> ATACCTCTGCAACCAGCACCTTCATGCCATTCAAGCATGATCTCAATCTC
EY920279       --> ATACCTCTGCAACCAGCACCTTCATGCCATTCAAGCATGATCTCAATCTC
EY935062       --> ATACCTCTGCAACCAGCACCTTCATGCCATTCAAGCATGATCTCAATCTC

               301    -    351
UN09855        --> GCCGCACTCGACGTTGTTGAGCCTAAGGATCATGTCTTGCGTGATCTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- GCCGCACTCGACGTTGTTGAGCCTAAGGATCATGTCTTGCATGATCTTAC  Raphanus raphanistrum subsp. landra
FD956359       <-- GCCGCACTCGACGTTGTTGAGCCTAAGGATCATGTCTTGCGTGATCTTAC  Raphanus sativus cv Rat-Tail Radish #3870
FD948574       <-- GCCGCACTCGACATTGTTGAGCCTAAGGATCATGTCTTGCGTGATCTTTC  Raphanus sativus cv Early Scarlet Globe
EY930999       <-- GCCGCACTCGACATTGTTGAGCCTAAGGATCATGTCTTGCGTGATCTTAC  Raphanus sativus var. oleiformis
EY924666       <-- GCCGCACTCGACGTTGTTGAGCCTAAGGATCATGTCTTGCGTGATCTTAC  Raphanus raphanistrum subsp. landra
EY949090       <-- .........................AGGATCATGTCTTGCGTGATCTTAC  Raphanus sativus cv Rat-Tail Radish #3870
FD944336       --> GCCGCACTCGACATTGTTGAGCCTAAGGATCATGTCTTGCGTGATCTTTC  Raphanus sativus cv Early Scarlet Globe
EY944670       --> GCCGCACTCGACGTTGTTGAGCCTAAGGATCATGTCTTGCGTGATCTTAC  Raphanus sativus cv Rat-Tail Radish #3870
EY920279       --> GCCGCACTCGACGTTGTTGAGCCTAAGGATCATGTCTTGCGTGATCTTAC  Raphanus raphanistrum subsp. landra
EY935062       --> GCCGCACTCGACATTGTTGAGCCTAAGGATCATGTCTTGCGTGATCTTTC  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN09855        --> CATTGTTCCACACGATGCTGCTTTCATCAGATAAACAGTTGTGCCTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- CATTGTTCCACACGATGCTGCTTTCATCAGATAAACAGTTGTGCCTGGAG
FD956359       <-- CATTGTTCCACACGATGCTGCTTTCATCAGATAAACAGTTGTGCCTGGAG
FD948574       <-- CATTGTTCCACACGATGCTGCTCTCATCAGATAAACAGTTGTGCCTGGAC
EY930999       <-- CATTGTTCCACACGATGCTGCTCTCATCAGATAAACAGTTGTGCCTGGAG
EY924666       <-- CATTGTTCCACACGATGCTGCTTTCATCAGATAAACAGTTGTGCCTGGAG
EY949090       <-- CATTGTTCCACACGATGCTGCTTTCATCAGATAAACAGTTGTGCCTGGAG
FD944336       --> CATTGTTCCACACGATGCTGCTCTCATCAGATAAACAGTTGTGCCTGGAC
EY944670       --> CATTGTTCCACACGATGCTGCTTTCATCAAATAAACAGTTGTGCCTGGAG
EY920279       --> CATTGTTCCACACGATGCTGCTTTCATCAGATAAACAGTTGTGCCTGGAG
EY935062       --> CTTTGTTCCACACGATGCTGCTc...........................

               401    -    451
UN09855        --> GGCTGAACCCGTTTGATAGCGCATCCATTAGGTAGCTTCAAAAGCTCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- GGCTGAACCCGTTTGATAGCGCATCCATTAGGTAGCTTCAAA-GCTCCAT
FD956359       <-- GGCTGAACCCGTTTGATAGCGCATCCATTAGGTAGCTTCAAAAGCTCCAT
FD948574       <-- GGCTGAACCCTTTTGATAGCGCATCCATTAGGTAGCTTCAAAAGCTCCAT
EY930999       <-- GGCTGAACCCTTTTGATAGCGCATCCATTAGGTAGCTTCAACAGCTCCAT
EY924666       <-- GGCTGAACCCGTTTGATAGCGCATCCATTAGGTAGCTTCAAAAGCTCCAT
EY949090       <-- GGCTGAACCCGTTTGATAGCGCATCCATTAGGTAGCTTCAAAAGCTCCAT
FD944336       --> GGCTGAACCCTTTTGATAGCGCATCCATTAGGTAGCTTCAAAAGCTCCAT
EY944670       --> GGCTGAACCCGTTTGATAGCGCATCCATTAGGTAGCTTCAAAAGCTCCAT
EY920279       --> GGCTGAACCCGTTTGATAGCGCATCCATTAGGTAGCTTCAAAAGCTCCAT
EY935062       --> ..................................................

               451    -    501
UN09855        --> TCCCATTTTGAGAGATTCTAAGTAGGGTTGAATGTCTAAGTTTGCATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- TCCCATTTTGAGAGATTCTAAGTAGGGTTGAATGTCTAAGTTTGCATCTC
FD956359       <-- TCCCATTTTGAGAGATTCTAAGTAGGGTTGAATGTCTAAGTTTGCATCTC
FD948574       <-- TCCCATTTTGAGAGATTCTAAGTAAGGTTGGATGTCTAAGTTTGCATCTC
EY930999       <-- TCCCATTTTGAGAGATTCTAAGTAGGGTTGAATGTCTAAGTTTGCATCTC
EY924666       <-- TCCCATTTTGAGAGATTCTAAGTAGGGTTGAATGTCTAAGTTTGCATCTC
EY949090       <-- TCCCATTTTGAGAGATTCTAAGTAGGGTTGAATGTCTAAGTTTGCATCTC
FD944336       --> TCCCATTTTGAGAGATTCTAAGTAAGGTTGGATGTCTAAGTTTGCATCTC
EY944670       --> TTCCATTTTGAGAGATTCTAAGTAGGGTTGAATGTCTAAGTTTGCATCTC
EY920279       --> TCCCATTTTGAGAGATTCTAAGTAGGGTTGAATGTCTAAGTTTGCATCTC
EY935062       --> ..................................................

               501    -    551
UN09855        --> CCATTTTGTCATCTCCAGTAAACTTGTCCCAGTCAAACACTGTCAAGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- CCATTTTGTCATCTCCAGTAAc............................
FD956359       <-- CCATTTTGTCATCTCCAGTAAACTTGTCCCAGTCAAACACTGTCAAGCGG
FD948574       <-- CCATTTTGTCATCTCCAGTAAACTTGTCCCAGTCAAACACTGTCAAGCGG
EY930999       <-- CCATTTTGTCATCTCCAGTAAACTTGTCCCAGTCAAACACTGTCAAGCGG
EY924666       <-- CCATTTTGTCATCTCCAGTAAACTTGTCCCAGTCAAACACTGTCAAGCGG
EY949090       <-- CCATTTTGTCATCTCCAGTAAACTTGTCCCAGTCAAACACTGTCAAGCGG
FD944336       --> CCATTTTGTCATCTCCAGTAAACTTGTCCCAGTCAAACACTGTCAAGCGG
EY944670       --> CCATTTTGTCATCTCCAGTAAACTTGTCCCAGTCAAACACTGTCAAGCGG
EY920279       --> CCATTTTGTCATCTCCAGTAAACTTGTCCCAGTCAAACACTGTCAAGCGG
EY935062       --> ..................................................

               551    -    601
UN09855        --> ATAGGGACATTGGGATCTTTGATAGCAACGGTCATCTCTTCGTTCCATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- ..................................................
FD956359       <-- ATAGGGACATTGGGATCTTTGATAACAACGGTCATCTCTTCGTTCCATAC
FD948574       <-- ATGGGAACATTGGGATCTTTGATAGCAACGGTCATCTCTTCGTTCCATAC
EY930999       <-- ATAGGGACATTGGGATCTTTGATAGCAACGGTCATCTCTTCGTTCCATAC
EY924666       <-- ATAGGGACATTGGGATCTTTGATAGCAACGGTCATCTCTTCGTTCCATAC
EY949090       <-- ATAGGGACATTGGGATCTTTGATAGCAACGGTCATCTCTTCGTTCCATAC
FD944336       --> ATGGGAACATTGGGATCTTTGATAGCAACGGTCATCTCTTCGTTCCATAC
EY944670       --> ATAGGGACATTGGGATCTTTGATAGCAACGGTCATCTCTTCGTTCCATAC
EY920279       --> ATAGGGACATTGGGATCTTTGATAGCAACGGTCATCTCTTCGTTCCATAC
EY935062       --> ..................................................

               601    -    651
UN09855        --> AGGATTGCAGTTTTTCTTCACCACACGCGTCTTCAATGTCTGGTCGGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- ..................................................
FD956359       <-- AGGATTGCAGTTTTTCTTCACCACACGCGTCTTCAATGTCTGGTCGGCGA
FD948574       <-- AGGATTGCAGTTTTTCTTCACCACACGCGTCTTCAATGTCTGGTCGGCGA
EY930999       <-- AGGATTGCAGTTTTTCTTCACCACACGCGTCTTCAATGTCTGGTTGGCGA
EY924666       <-- AGGATTGCAGTTTTTCTTCACCACACGCGTCTTCAATGTCTGGTCGGCGA
EY949090       <-- AGGATTGCAGTTTTTCTTCACCACACGCGTCTTCAATGTCTGGTCGGCGA
FD944336       --> AGGATTGCAGTTTTTCTTCACCACACGCGTCTTCAATGTCTGGTCGGCGA
EY944670       --> AGGATTGCAGTTTTTCTTCACCACACGCGTCTTCAATGTCTGGTCGGCGA
EY920279       --> AGGATTGCAGTTTTTCTTCACCACACGCGTCTTCAATGTCTGGTCGGCGA
EY935062       --> ..................................................

               651    -    701
UN09855        --> CGGTGATAACAACGTAAGGATCGCTGCTTCTGTGGTCGCGAATGGCGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD956359       <-- CGGTGATAACAACGTAAGGATCGCTGCTTCTGTGGTCGCGAATGGCGAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD948574       <-- CGGTGATAACAACGTAAGGATCGCTGCTTCTGTGGTCGCGAATGGCGAGA  Raphanus sativus cv Early Scarlet Globe
EY930999       <-- CGGTGATAACAACATAAGGATCGCTGCTTCTGTGGTCGCGAATGGCGAGA  Raphanus sativus var. oleiformis
EY924666       <-- CGGTGATAACAACATAAGGATCGCTGCTTCTGTGGTCGCGAATGGCGAGA  Raphanus raphanistrum subsp. landra
EY949090       <-- CGGTGATAACAACGTAAGGATCGCTGCTTCTGTGGTCGCGAATGGCGAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD944336       --> CGGTGATAACAACGTAAGGATCGCTGCTTCTGTGGTCGCGAATGGCGAGA  Raphanus sativus cv Early Scarlet Globe
EY944670       --> CGGTGATAACAACGTAAGGATCGCTGCTTCTGTGGTCGCGAA........  Raphanus sativus cv Rat-Tail Radish #3870
EY920279       --> CGGTGATAACAACATAAGGATCGCTGCTTCTGTGGTCGCGAATGGCGAGA  Raphanus raphanistrum subsp. landra
EY935062       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               701    -    751
UN09855        --> TTAATACCTTTTTTGACGTGGATCGTTAGCAATCCCAGAGGCCTTTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- ..................................................
FD956359       <-- TTAATACCTTTTTTGACGTGGATCGTTA......................
FD948574       <-- TTAATACCTTTTTTGACGTGGATCGTTAGCAATCCCAGAGGCCTTTGATC
EY930999       <-- TTAATACCTTTTTTGACGTGGATCGTTAGCAATCCCAGAGGCCTTTGATC
EY924666       <-- TTAATACCTTTTTTGACGTGGATCGTTAGCAATCCCAGAGGCCTTTGATC
EY949090       <-- TTAATACCTTTTTTGACGTGGATCGTTAGCAATCCCAGAGGCCTTTGATC
FD944336       --> TTAATACCTTTTTTGACGTGGATCGTTAGCAATCCC..............
EY944670       --> ..................................................
EY920279       --> TTAATACCTTTTTTGACGTGGATCGTTAGCAATCCCAGAGGCCTTTGATC
EY935062       --> ..................................................

               751    -    801
UN09855        --> CATTGGACTTTTTGAGAAGATTGGAGATAATCAACGAAGCTTTCGAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- ..................................................
FD956359       <-- ..................................................
FD948574       <-- CATTGGACTTTTTCAGAAGATCGGAGATAATCAACGAAGCTTTGGAGATA
EY930999       <-- CATTGGACTTTTTGAGAAGATTGGAGATAATCAACGAAGCTTTCGAGATA
EY924666       <-- CATTGGACTTTTTGAGAAGATTGGAGATAATCAACGAAGCTTTCGAGATA
EY949090       <-- CATTGGACTTTTTCAGAAGATTGGAGATAATCAACGAAGATTTGGAGATA
FD944336       --> ..................................................
EY944670       --> ..................................................
EY920279       --> CATTGGACTTTTTGAGAAGATTGGAGATAATCAACGAAGCTTTCGAGATA
EY935062       --> ..................................................

               801    -    851
UN09855        --> ACGATGAATGATTGGAAAAAAAGGAAAGAGACTTGGGGATGATGATGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- ..................................................
FD956359       <-- ..................................................
FD948574       <-- ACGATGAATGATTGGAAAAAAAGGAAAGAGACTTGGGGATGATGATGATG
EY930999       <-- ACGATGAATcc.......................................
EY924666       <-- ACGATGAATGATTGGAAAA--AGAAAAAAGACTTGGGGATGATGATGATG
EY949090       <-- ACGATGAATGATTGGAAAAAAAGGAAAGAGACTTGGGGATGATGATGATG
FD944336       --> ..................................................
EY944670       --> ..................................................
EY920279       --> ACGATG............................................
EY935062       --> ..................................................

               851    -    901
UN09855        --> ATGAATTGATTAGAAGAAAGAAAGTGTTTAATGTTATCCTCCCCCAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- ..................................................
FD956359       <-- ..................................................
FD948574       <-- ATGAtgatgatgatgattcc..............................
EY930999       <-- ..................................................
EY924666       <-- ATTAATTGATTAGAAGAAAGAAAGTGTTTAATGTTATCCTCCCCCAAACT
EY949090       <-- ATGAtgatgatgatcc..................................
FD944336       --> ..................................................
EY944670       --> ..................................................
EY920279       --> ..................................................
EY935062       --> ..................................................

               901    -    951
UN09855        --> ATTCAACACGTTCTTTCCCACAATTTGCTCATTCTATTCTTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922436       <-- .............................................
FD956359       <-- .............................................
FD948574       <-- .............................................
EY930999       <-- .............................................
EY924666       <-- ATTCAACACGTTCTTTCCCACAATTTGCTCATTCTATTCTTTTCC
EY949090       <-- .............................................
FD944336       --> .............................................
EY944670       --> .............................................
EY920279       --> .............................................
EY935062       --> .............................................