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Alignment for radish unigene UN09863

               -6     -     44
UN09863        --> .......GGACTCGAA--AAAAAAAAAAAAAAAAAGACATGGCAACCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- ..................................................
FD548098       <-- ..................................................
FD584108       <-- ..................................................
FD574941       <-- ..................................................
FD552299       --> .......GGACTCGAA-GAAAAAAAAAAAAAAAAAGACATGGCAACCACA
FD957626       --> .......GGACTCGAAGAAAAAAAAAAAAAAAAAAGACATGGCAACCACA
EY897052       --> ........GACTCGAA--GAAAAAAAAAAAAAAAAGACATGGCAACCACA
EX748970       --> ........gggaaGAA--AAAAAAAAAAAAAAAAAGACATGGCAACCACA
FD568637       --> .....gactcgaaGAA--AAAAAAAAAAAAAAAAAGACATGGCAACCACA
FD580290       --> gggaacactcgaaGAA--AAAAAAAAAAAAAAAAAGACATGGCAACCACA
FD571031       --> ........gggacactcgaagAAAAAAAAAAAAAAGACATGGCAACCACA
FD564178       --> ...........ggactcgaagagAAAAAAAAAAAAGACATGGCAACCACA
EY921654       --> ....................................ggATGGCAACCACA
EY940519       --> ..................................................

               44     -     94
UN09863        --> GAGGTAAAACCCTCCGCCGCTAAAAACCCTAAAAAGACTCGGAACCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- ..................................................
FD548098       <-- ..................................................
FD584108       <-- ..................................................
FD574941       <-- ..................................................
FD552299       --> GAGGTAAAACCCTCCGCCGCTAAAAACCCTAAAAAGACTCGGAACCCATC
FD957626       --> GAGGTAAAACCCTCCGCCGCTAAAAACCCTAAAAAGACGCGGAACCCATC
EY897052       --> GAGGTAAAACCCTCCGCCGCTAAAAACCCTAAAAAGACTCGGAACCCATC
EX748970       --> GAGGTAAAACCCTCCGCCGCTAAAAACCCTAAAAAGACTCGGAACCCATC
FD568637       --> GAGGTAAAACCCTCCGCCGCTAAAAACCCTAAAAAGACTCGGAACCCATC
FD580290       --> GAGGTAAAACCCTCCGCCGCTAAAAACCCTAAAAAGACTCGGAACCCATC
FD571031       --> GAGGTAAAACCCTCCGCCGCTAAAAACCCTAAAAAGACTCGGAACCCATC
FD564178       --> GAGGTAAAACCCTCCGCCGCTAAAAACCCTAAAAAGACTCGGAACCCATC
EY921654       --> GAGGTAAAACCCTCCGCCGCTAAAAACCCTAAAAAGACTCGGAACCCATC
EY940519       --> ..................................................

               94     -    144
UN09863        --> CCTGGGTCCGAAGAAAGATCTGAAGAAGAAGAAGAA------TAAGACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- ..................................................
FD548098       <-- ..................................................
FD584108       <-- ..................................................
FD574941       <-- ..................................................
FD552299       --> CCTGGGTCCGAAGAAAGATCTGAAGAAGAAGAAGAA------TAAGACTA
FD957626       --> CCTGGGTCCGAAGAAAGATCTGAAGAAGATGAAGAA------TAAGACTA
EY897052       --> CCTGGGTCCGAAGAAAGATCTGAAGAAGAAGAAGAAGAAGAATAAGACTA
EX748970       --> CCTGGGTCCGAAGAAAGATCTGAAGAAGAAGAAGAA------TAAGACTA
FD568637       --> CCTGGGTCCGAAGAAAGATCTGAAGAAGAAGAAGAA------TAAGACTA
FD580290       --> CCTGGGTCCGAAGAAAGATCTGAAGAAGAAGAAGAA------TAAGACTA
FD571031       --> CCTGGGTCCGAAGAAAGATCTGAAGAAGAAGAAGAA------TAAGACTA
FD564178       --> CCTGGGTCCGAAGAAAGATCTGAAGAATAAGAAGAA------TAAGACTA
EY921654       --> CCTGGGTCCGAAGAAAGATCTGAAGAAGAAGAAGAA------TAAGACTA
EY940519       --> ...........................................AAGACTA

               144    -    194
UN09863        --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGTCGAAAGAAACGACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- ..................................................
FD548098       <-- ..................................................
FD584108       <-- ..................................................
FD574941       <-- ..................................................
FD552299       --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGTCGAAAGAAACGACCAG
FD957626       --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGTCGAAAGAAACGACCAG
EY897052       --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGTTGAAAGAAACGACCAG
EX748970       --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGTCGAAAGAAACGACCAG
FD568637       --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGTCGAAAGAAACGACCAG
FD580290       --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGTCGAAAGAAACGACCAG
FD571031       --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGCCGAAAGAAACGACCAG
FD564178       --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGTCGAAAGAAACGACCAG
EY921654       --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGTCGAAAGAAACGACCAG
EY940519       --> AGAAGTCAAAAGCCCTCGCCTTTGACAACACGGTCGAAAGAAACGACCAG

               194    -    244
UN09863        --> AGCGACGGCGAGGAACAACAACCTGTATCGGCTTCTGAACAGCTAAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- ..................................................
FD548098       <-- ..................................................
FD584108       <-- ..................................................
FD574941       <-- ..................................................
FD552299       --> AGCGACGGCGAGGAACAACAACCTGTATCGGCTTCTGAACAGCTAAGCTT
FD957626       --> AGCGACGGCGAGGAACAACAACCTGTATCGGCTTCTGAACAGCTAAGCTT
EY897052       --> AGCGACGGCGAGGAACAACAACCTGTATCGGCTTCTGAACAGCTAAGCTT
EX748970       --> AGCGACGGCGAGGAACAACAACCTGTATCGGCTTCTGAACAGCTAAGCTT
FD568637       --> AGCGACGGCGAGGAACAACAACCTGTATCGCCTTCTGAACAGCTAAGCTT
FD580290       --> AGCGACGGCGAGGAACAACAACCTGTATCGGCTTCTGAACAGCTAAGCTT
FD571031       --> AGCGACGGCGAGGAACAACAACCTGTATCGCCTTCTGAACAGCTAAGCTT
FD564178       --> AGCGACGGCGAGGAACAACAGCCTGTATCGGCTTCTGAACAGCTAAGCTT
EY921654       --> AGCGACGGCGAGGAACAACAACCTGTATCGGCTTCTGAACAGCTAAGCTT
EY940519       --> AGCGACGGCGAGGAACAACAACCTGTATCGGCTTCTGAACAGCTAAGCTT

               244    -    294
UN09863        --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- ....TTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG
FD548098       <-- .....TAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG
FD584108       <-- ..................................................
FD574941       <-- ..................................................
FD552299       --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG
FD957626       --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG
EY897052       --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG
EX748970       --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCCCTCCTTTAG
FD568637       --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG
FD580290       --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTT...
FD571031       --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG
FD564178       --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG
EY921654       --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG
EY940519       --> CTTCTTAAAGCAGCTTGATTCCGCCATTGGTGTCCGTGTCTCTCCTTTAG

               294    -    344
UN09863        --> AGCTTGATCCCATTAAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- AGCTTGATCCCATTAAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
FD548098       <-- AGCTTGATCCCAT-AAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
FD584108       <-- ..................................................
FD574941       <-- ..................................................
FD552299       --> AGCTTGATCCCAT-AAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
FD957626       --> AGCTTGACCCCATTAAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
EY897052       --> AGCTTGATCCCATTAAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
EX748970       --> AGCTTGATCCCATTAAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
FD568637       --> AGCTTGATCCCATTAAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
FD580290       --> ..................................................
FD571031       --> AGCTTGATCCCATTAAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
FD564178       --> AGCTTGATCCCATTAAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
EY921654       --> AGCTTGATCCCATTAAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG
EY940519       --> AGCT--ATCCCATTAAAGACAAGTGTGTAGTTGAGTTATCTCAAAAGTTG

               344    -    394
UN09863        --> GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGTCTTATGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGTCTTATGGATC
FD548098       <-- GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGTCTTGTGGATC
FD584108       <-- ..................................................
FD574941       <-- ..................................................
FD552299       --> GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGTCTTGTGGATC
FD957626       --> GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGGCTTATGGATC
EY897052       --> GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGTCTTATGGATC
EX748970       --> GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGTCTTATGGATC
FD568637       --> GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGTCTTATGGATC
FD580290       --> ..................................................
FD571031       --> GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGTCTTATGGATC
FD564178       --> GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGTCTTATGGATC
EY921654       --> GATCAGAATGTAAGCAACTTGGGAGAGCATATTAAGATGTCTTATGGATC
EY940519       --> G.................................................

               394    -    444
UN09863        --> TTCCTGGAGAGAGACTCTTTGTGAAGGGGAGGCAATCGAAGGGAAAGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- TTCCTGGAGAGAGACTCTTTGTGAAGGGGAGGCAATCGAAGGGAAAGTCG
FD548098       <-- TTCCTGTAGAGAGACTCTTTGTGAAGGGGAGGCAATCGAAGGGAAAGTCG
FD584108       <-- ...............................................TCG
FD574941       <-- ..................................................
FD552299       --> TTCCTGTAGAGAGACTCTTTGTGAAGGGGAGGCAATCGAAGGGAAAGTCG
FD957626       --> TTCCTGGAGAGAGACTCTTTGCGAAGGAGAGGCTATTGAAGGGAAAGTCG
EY897052       --> TTCCTGGAGAGAGACTCTTTGTGAAGGGGAGGCAATCGAAGGGAAAGTCG
EX748970       --> TTCCTGGAGAGAGACTCTTTGTGAAGGGGAGGCAATCGAAGGGAAAGTCG
FD568637       --> TTCCTGGAGAGAGACTCTTTGTGAAGGGGAGGCAATCGAAGGGAAAGTCG
FD580290       --> ..................................................
FD571031       --> TTCCTGGAGAGAGACTCTTTGTGAAGGGGAGGCAATCGAAGGGAAAGTCG
FD564178       --> TTCCTGGAGAGAGACTCTTTGTGAAGGGGAGGCAATCGAAGGGAAAGTCG
EY921654       --> TTCCTGGAGAGAGACTCTTTGTGAAGGGGAGGCAATCGAAGGGAAAGTCG
EY940519       --> ..................................................

               444    -    494
UN09863        --> ATCCCGGAAACCCAGCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- ATCCCGGAAACCCAGCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
FD548098       <-- ATCCCGGAAACCCAGCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
FD584108       <-- ATCCCGGAAACCCATCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
FD574941       <-- ...................................TCTGCTCTGAGATCT
FD552299       --> ATCCCGGAAACCCAGCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
FD957626       --> ATCCCGGAAACCCATCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
EY897052       --> ATCCCGGAAACCCAGCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
EX748970       --> ATCCCGGAAACCCAGCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
FD568637       --> ATCCCGGAAACCCAGCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
FD580290       --> ..................................................
FD571031       --> ATCCCGGAAACCCAGCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
FD564178       --> ATCCCGGAAACCCAGCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
EY921654       --> ATCCCGGAAACCCAGCTGTTCTCGTTGTTAGCTCCTCTGCTCTGAGATCT
EY940519       --> ..................................................

               494    -    544
UN09863        --> TTGGAACTTATAA-GGGGTTTGCATTCACTGACCAAGCAGTGTCCAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- TTGGAACTTATAA-GGGGTTTGCATTCACTGACCAAGCAGTGTCCGGCTT  Raphanus sativus cv Early Scarlet Globe
FD548098       <-- TTGGAACTTATAA-GGGGTTTGCATTCACTGACCAAGCAGTGTCCAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD584108       <-- TTGGAACTTATAA-GGGGTTTGCATTCACTTACTAAGCAGTGTCCAGCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD574941       <-- TTGGAACTTATAA-GGGGTTTGCATTCACTGACCAAGCAGTGTCCGGCTT  Raphanus sativus cv Early Scarlet Globe
FD552299       --> TTGGAACTTATAA-GGGGTTTGCATTCACTGACCAAGCAGTGTCCAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD957626       --> TTGGAACTTATAAAGGGGTTTGCATTCACTTACTAAGCAGTGTCCAGCTT  Raphanus sativus cv Rat-Tail Radish #3870
EY897052       --> TTGGAACTTATAA-GGGGGTTGCATT........................  Raphanus raphanistrum subsp. maritimus
EX748970       --> TTGGAACTTATAA-GGGGTTTGCATTCACTGACCAAGCAGTGTCCAGCTT  Raphanus raphanistrum subsp. maritimus
FD568637       --> TTGGAACTTATAA-GGGGTTTGCATTCACTGACCAAGCAGTGTCCGGCTT  Raphanus sativus cv Early Scarlet Globe
FD580290       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD571031       --> TTGGAACTTATAA-GGGGTTTGCATTCACTGACCAAGCAGTGTCCGGCTT  Raphanus sativus cv Early Scarlet Globe
FD564178       --> TTGGAACTTATAA-GGGGTTTGCATTCACTGACCAAGCAGTGTCCAGCTT  Raphanus sativus var. oleiformis
EY921654       --> TTGGAACTTATAA-GGGGTTTGCATTCACTGACCAAGCAGTGTCCAGCTT  Raphanus raphanistrum subsp. landra
EY940519       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               544    -    594
UN09863        --> TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTCTCTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTCTCTGTTG
FD548098       <-- TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTCTCTGTTG
FD584108       <-- TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTCTCTGTTG
FD574941       <-- TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTTTCTGTTG
FD552299       --> TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTCTCTGTTG
FD957626       --> TGAAGTTGTTCTCAAAGCATTTG...........................
EY897052       --> ..................................................
EX748970       --> TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTCTCTGTTG
FD568637       --> TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTCTCTGTTG
FD580290       --> ..................................................
FD571031       --> TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTCTCTGTTG
FD564178       --> TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTCTCTGTTG
EY921654       --> TGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTGTCTCTGTTG
EY940519       --> ..................................................

               594    -    644
UN09863        --> AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCAGAATAAAAAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCGGAATAAAAAAGCT
FD548098       <-- AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCAGAATAAAAAAGCT
FD584108       <-- AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCAGAATAAAAAAGCT
FD574941       <-- AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCAGAATAAAAAAGCT
FD552299       --> AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCAGAATAAAAAAGCT
FD957626       --> ..................................................
EY897052       --> ..................................................
EX748970       --> AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCAGAATAAAAAAGCT
FD568637       --> AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCGGAATAAAAAA...
FD580290       --> ..................................................
FD571031       --> AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCAGAATAAAAAAGCT
FD564178       --> AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCAGAATAAAAAAGCT
EY921654       --> AAAAAACGAGTTAATATTGGGAGCGGCACACCGAGCAGAATAAAAAAGCT
EY940519       --> ..................................................

               644    -    694
UN09863        --> GATCGACATAGAGGCATTAGGGCTTTCACGTTTAGATATGATTGTGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- GATCGACATAGAGGCATTAGGGCTTTCACGTTTAGATATGATTGTGCTTG
FD548098       <-- GATCGACATAGAGGCATTAGGGCTTTCACGTTTAGATATGATTGTGCTCG
FD584108       <-- GATCGACATAGAGGCATTAGGGCTTTCACGTTTAGATATGATTGTGCTTG
FD574941       <-- GATCGACATAGAGGCATTAGGGCTTTCACGTTTAGATATGATTGTGCTTG
FD552299       --> GATCGACATAGAGGCATTAGGGCTTTCACGTTTAGATATGATTGTGCTCG
FD957626       --> ..................................................
EY897052       --> ..................................................
EX748970       --> GATCGACATAGAGGCATTAGGGCTTTCACGTTTAGATATGATTGTGCTTG
FD568637       --> ..................................................
FD580290       --> ..................................................
FD571031       --> GATCGACATAGAGGCATTAGGGCTTTCACGTTTAGATATGATTGTGCTTG
FD564178       --> GATCGAGATAGAGGCATTAGGGCTTTCACGTTTAGATATGATTGTGCTTG
EY921654       --> GATCGACATAGAGGCATTAGGGCTTTCACGTTTAGATATGATTGTGCTTG
EY940519       --> ..................................................

               694    -    744
UN09863        --> ACATGGACACAGATGTCAAGGGATTTTCCTTATTCACTTTGCCCCAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- ACATGGAC--AGATGTCAAGGGATTTTCCTTATTCACTTTGCCCCAAGTC
FD548098       <-- ACATGGACACAGATGTCAAGGGATTTTCCTTATTCACTTTGCCCCAAGTC
FD584108       <-- ACATGGACACAGATGTCAAGGGATTTTCCTTATTCACTTTGCCCCAAGTC
FD574941       <-- ACATGGACACAGATGTCAAGGGATTTTCCTTATTCACTTTGCCCCAAGTC
FD552299       --> ACATGGACACAGATGTCAAGGGATTT-CCTTATTCACTTTGCCCaag...
FD957626       --> ..................................................
EY897052       --> ..................................................
EX748970       --> ACATGGACACAGATGTCAAGG.............................
FD568637       --> ..................................................
FD580290       --> ..................................................
FD571031       --> ACATGGACACAGATGTCAAGGGATTTTCCTTATTCACTTTGCCC-AAGTC
FD564178       --> ACATGCACACAGATGTCAAGGGATTT-CCTTATTCACTTTGCCC-AAGTC
EY921654       --> ACATGGACACAGATGTCAAGGGATTTTCCTTATTCACTTTGCCC-AAGTC
EY940519       --> ..................................................

               744    -    794
UN09863        --> AGAGATGAGTTTTGGGATTTGTATAAGACATGCTTCCACCAGAGAGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- AGAGATGAGTTTTGGGATTTGTATAAGACATGCTTCCACCAGAGAGTGCT
FD548098       <-- AGAGATGAGTTTTGGGATTTGTATAAGACATTCTTCCACCAGAGAGTGCT
FD584108       <-- AGAGATGAGTTTTGGGATTTGTATAAGACATGCTTCCACCGGAGAGTGCT
FD574941       <-- AGAGATGAGTTTTGGGATTTGTATAAGACATGCTTCCACCAGAGAGTGCT
FD552299       --> ..................................................
FD957626       --> ..................................................
EY897052       --> ..................................................
EX748970       --> ..................................................
FD568637       --> ..................................................
FD580290       --> ..................................................
FD571031       --> AGAGATGAGTTTTGGGATTTGTATAAGACATGCTTCCACCAGAGAGTG..
FD564178       --> AGAGATGAGTTT-GGGATTTGTATAAGACATGCTTCCACCAGAGAGTGCT
EY921654       --> AGAGATGAGTTTTGGGATTTGTATAAGACATGCTTCC-CCAGAGAGTGCT
EY940519       --> ..................................................

               794    -    844
UN09863        --> AGAAGGAAGTCTACGTATCTGTCTGTATGGTCCAAAGCCATCAGCTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- AGAAGGAAGTCTACGTATCTGTCTGTATG-TCCAAAGCCATCAGCTCCAA
FD548098       <-- AGAAGGAAGTCTACGTATCTGTCTGTATGGTCCAAAGCCATCAGCTCCAA
FD584108       <-- AGAAGGAAGTTTACGTATCTGTCTGTATGGTCCAAAGCCATCAGCTCCAA
FD574941       <-- AGAAGGAAGTCTACGTATCTGTCTGTATGGTCCAAAGCCATCAGCTCCAA
FD552299       --> ..................................................
FD957626       --> ..................................................
EY897052       --> ..................................................
EX748970       --> ..................................................
FD568637       --> ..................................................
FD580290       --> ..................................................
FD571031       --> ..................................................
FD564178       --> AGAAGGA-GTCTACGTATCTGTCTGTATGGTC-AAAGC-AGCAGCTCCAA
EY921654       --> ..................................................
EY940519       --> ..................................................

               844    -    894
UN09863        --> AGCTTAAGAACAATAAGAAACAGAGACAAAACGAGCATTGAGCAATGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- AGCTTAAGAACAATAAGAAACAGAGACAAAACGAGCATTGAGCAATGGCA
FD548098       <-- AGGTTAAGAACAATAAGAAACAGAGACAAAACGAGCATTGAGCAATGGCA
FD584108       <-- AGCTTAAGAACAATAAGAAACAGAGACAAAACGAGCATTGAGCAATGGCA
FD574941       <-- AGCTTAAGAACAATAAGAAACAGAGACAAAACGAGCATTGAGCAATGGCA
FD552299       --> ..................................................
FD957626       --> ..................................................
EY897052       --> ..................................................
EX748970       --> ..................................................
FD568637       --> ..................................................
FD580290       --> ..................................................
FD571031       --> ..................................................
FD564178       --> gctaagaa..........................................
EY921654       --> ..................................................
EY940519       --> ..................................................

               894    -    944
UN09863        --> GATTTTACTCCAATTTTGATATATTTAACTCGTTTTGCTATGTGATTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- GATTTTACTCCAATTTTGATATATTTAACTCGTTTTGCTATGTGATTCGT
FD548098       <-- GATTTTACTCCAATTTTGATATATTTAACTCGTTTTGCTATGTGATTCGT
FD584108       <-- GATTTTACTCCAATTTTGATATATTTAACTCGTTTTGCTATGTGATTCGT
FD574941       <-- GATTTTACTCCAATTTTGATATATTTAACTCGTTTTGCTATGTGATTCGT
FD552299       --> ..................................................
FD957626       --> ..................................................
EY897052       --> ..................................................
EX748970       --> ..................................................
FD568637       --> ..................................................
FD580290       --> ..................................................
FD571031       --> ..................................................
FD564178       --> ..................................................
EY921654       --> ..................................................
EY940519       --> ..................................................

               944    -    994
UN09863        --> CTTTCTACCATACGAAGTGAATTTATTGTTAATTAGTGTTCTTGTGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- CTTTCTACCATACGAAGTGAATTTATTGTTAATTAGTGTTCTTGTGAGAA
FD548098       <-- CTTTCTACCATACGAAGTGAATTTATTGTTAATTAGTGTTCTTGTGAG..
FD584108       <-- CTTTCTACCATACGAAGTGAATTTATTGTTAATTAGTGTTCTTGTGAGAA
FD574941       <-- CTTTCTACCATACGAAGTGAATTTATTGTTAATTAGTGTTCTTGTGAGAA
FD552299       --> ..................................................
FD957626       --> ..................................................
EY897052       --> ..................................................
EX748970       --> ..................................................
FD568637       --> ..................................................
FD580290       --> ..................................................
FD571031       --> ..................................................
FD564178       --> ..................................................
EY921654       --> ..................................................
EY940519       --> ..................................................

               994    -   1044
UN09863        --> ATACAGTGTTCTGTTAATTAGTGTTCTTTTGGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572949       <-- ATACAGTGTTCTGTTAATT................
FD548098       <-- ...................................
FD584108       <-- ATACAGTGTTCTGTTAATTAGTGTTCTTTTGGCCG
FD574941       <-- ATACAGTGTTCTGc.....................
FD552299       --> ...................................
FD957626       --> ...................................
EY897052       --> ...................................
EX748970       --> ...................................
FD568637       --> ...................................
FD580290       --> ...................................
FD571031       --> ...................................
FD564178       --> ...................................
EY921654       --> ...................................
EY940519       --> ...................................