Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN09864

               1      -     51
UN09864        --> TTTTTTTGAGAACTGAACTGATTTTTTTTCTGCCTCATTTAACTTAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- TTTTTTTGAGAACTGAACTGATTTTTTTTCTGCCTCATTTAACTTAGCAA
EV551880       <-- .........agACTGAACTGATTTTTTTTCTGCCTCATTTAACTTAGCAA
EX905360       <-- ........gatggaGAACTGATTTTTTT-CTGCCTCATTTAACTTAGCAA
FY444611       <-- ..................................................
FY448006       <-- ..................................................
FY449817       <-- ..................................................
FY452549       <-- ..................................................
EY912442       --> .......GAGAACTGAACTGATTTTTTTTCTGCCTCATTTAACTTAACAA
FD959883       --> .......GAGAACTGAACTGATTTTTTTTCTGCCTCATTTAACTTAGCAA
EV546903       --> .........agACTGAACTGATTTTTTTTCTGCCTCATTTAACTTAGCAA
FY429041       --> ..............gagaatgaTTTTTTTCTGCCTCATTTAACTTAGCAA
FY430525       --> .............................CTGCCTCATTTAACTTAGCAA
FY441052       --> .............................CTGCCTCAT-CAACTTAGCAA

               51     -    101
UN09864        --> AAAAATCCCAAAACTTGGGTTCGTAGAACAAAAAGCCTTCAGCAAGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- AAAAATCCCAAAACTTGGGTTCGTAGAACAAAAAGCCTTCAGCAAGTATG
EV551880       <-- AAAAATCCCAAAACTTGGGTTCGTAGAACAAAAAGCCTTCAGCAAGTATG
EX905360       <-- AAAAATCCCAAAACTTGGGTTCGTAGAACAAAAAGCCTTCAGCAAGTATG
FY444611       <-- ..................................................
FY448006       <-- ..................................................
FY449817       <-- ..................................................
FY452549       <-- ..................................................
EY912442       --> AAAAATCCCAAAACTTGGGTTCGTAGAACAAAAAGCCTTCAGCAAGTATG
FD959883       --> AAAAATCCCAAAACTTGGGTTCGTAGAACAAAAAGCCTTCAGCAAGTATG
EV546903       --> AAAAATCCCAAAACTTGGGTTCGTAGAACAAAAAGCCTTCAGCAAGTATG
FY429041       --> AAAAATCCCAAAACTTGGGTTCGTAGAACAAAAAGCCTTCAGCAAGTATG
FY430525       --> AAAAATCCCAAAACTTGGGTTCGTAGAACAAAAAGCCTTCAGCAAGTATG
FY441052       --> AAAAATCCCAAAACTTGCCCTTTAAGGACAAAAAGCCTTCAGCAAGTATG

               101    -    151
UN09864        --> ACGATAACAATGAAATCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ACGATAACAATGAAATCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTA
EV551880       <-- ACGATAACAATGAAATCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTA
EX905360       <-- ACGATAACAATGAAGTCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTA
FY444611       <-- ..................................................
FY448006       <-- ..................................................
FY449817       <-- ..................................................
FY452549       <-- ..................................................
EY912442       --> ACGATAACAATGAAATCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTA
FD959883       --> ACGATAACAATGAAATCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTA
EV546903       --> ACGATAACAATGAAATCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTA
FY429041       --> ACGATAACAATGAAATCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTA
FY430525       --> ACGATAACAATGAAATCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTA
FY441052       --> ACGATAACAACGTAATCAGAAGAACAAAAAGAGAACCGGGTGAGAGATTA

               151    -    201
UN09864        --> CAAAAACAAAAGCAGACCAAACGGAGGCTGAAGGACCAGACCAGAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- CAAAAACAAAAGCAGACCAAACGGAGGCTGAAGGACCAGACCAGAGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551880       <-- CAAAAACAAAAGCAGACCAAACGGAGGCTGAAGGACCAGACCAGAGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX905360       <-- CAAAAACAAAAGCAGACCAAACGGAGGCTGAAGGACCAAACCAGAGAGAG  Raphanus sativus cv Rat-Tail Radish #3870
FY444611       <-- ..................................................  Raphanus sativus cv GSK3-1
FY448006       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449817       <-- ..................................................  Raphanus sativus cv GSK3-1
FY452549       <-- ..................................................  Raphanus sativus cv GSK3-1
EY912442       --> CAAAAACAAAAGCAGACCAAACGGAGGCTGAAGGACCAGACCAGAGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959883       --> CAAAAACAAAAGCAGACCAAACGGAGGCTGAAGGACCAGACCAGAGAGAG  Raphanus raphanistrum subsp. maritimus
EV546903       --> CAAAAACAAAAGCAGACCAAACGGAGGCTGAAGGACCAGACCAGAGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY429041       --> CAAAAACAAAAGCAGACCAAACGGAGGCTGAAGGACCAAACCAGAGAGAG  Raphanus sativus cv GSK3-1
FY430525       --> CAAAAACAAAAGCAGACCAAACGGAGGCTGAAGGACCAAACCAGAGAGAG  Raphanus sativus cv GSK3-1
FY441052       --> CAAAAACAAAAGCAGACCAAACGGAGGCTGAAGGACCAAACCAGAGAGAG  Raphanus sativus cv GSK3-1

               201    -    251
UN09864        --> CCTTACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- CCTTACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551880       <-- CCTTACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX905360       <-- CTTCACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGC  Raphanus sativus cv Rat-Tail Radish #3870
FY444611       <-- ..................................................  Raphanus sativus cv GSK3-1
FY448006       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449817       <-- ..................................................  Raphanus sativus cv GSK3-1
FY452549       <-- ..................................................  Raphanus sativus cv GSK3-1
EY912442       --> CCTTACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959883       --> CCTTACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGC  Raphanus raphanistrum subsp. maritimus
EV546903       --> CCTTACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY429041       --> CTTCACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGC  Raphanus sativus cv GSK3-1
FY430525       --> CTTCACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGC  Raphanus sativus cv GSK3-1
FY441052       --> CTTCACTTTCCCAGAGTAGGGAAGTGTGCAGCGTCTTCAATCTTTGGTGC  Raphanus sativus cv GSK3-1

               251    -    301
UN09864        --> AGGCGCAGCAGCCTTTCTCTCAGCTCCTCCTTTTGGTCCACGACCACCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- AGGCGCGGCAGCCATTCTCTCAGCTCCTCCTTTTGGTCCACGACCACCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551880       <-- AGGCGCAGCAGCCTTTCTCTCAGCTCCTCCTTTTGGTCCACGACCACCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX905360       <-- AGGCGCAGCAGCCTTTCTTTCAGCTCCTCCTTTTGGTCCACGACCACCCT  Raphanus sativus cv Rat-Tail Radish #3870
FY444611       <-- ..................................................  Raphanus sativus cv GSK3-1
FY448006       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449817       <-- ..................................................  Raphanus sativus cv GSK3-1
FY452549       <-- ..................................................  Raphanus sativus cv GSK3-1
EY912442       --> AGGCGCGGCAGCCATTCTCTCAGCTCCTCCTTTTGGTCCACGACCACCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959883       --> AGGCGCAGCAGCCTTTCTCTCAGCTCCTCCTTTTGGTCCACGACCACCCT  Raphanus raphanistrum subsp. maritimus
EV546903       --> AGGCGCAGCAGCCTTTCTCTCAGCTCCTCCTTTTGGTCCACGACCACCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY429041       --> AGGCGCAGCAGCCTTTCTTTCAGCTCCTCCTTTTGGTCCACGACCACCCT  Raphanus sativus cv GSK3-1
FY430525       --> AGGCGCAGCAGCCTTTCTTTCAGCTCCTCCTTTTGGTCCACGACCACCCT  Raphanus sativus cv GSK3-1
FY441052       --> AGGCGCAGCAGCCTTTCTTTCAGCTCCTCCTTTTGGTCCACGACCACCCT  Raphanus sativus cv GSK3-1

               301    -    351
UN09864        --> CGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTTGGTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- CGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTTGGTCCA
EV551880       <-- CGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTTGGTCCA
EX905360       <-- CGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTTGGTCCA
FY444611       <-- ..................................................
FY448006       <-- ..................................................
FY449817       <-- ..................................................
FY452549       <-- ..................................................
EY912442       --> CGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTTGGTCCA
FD959883       --> CGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTTGGTCCA
EV546903       --> CGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTTGGTCCA
FY429041       --> CGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTTGGTCCA
FY430525       --> CGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTTGGTCCA
FY441052       --> CGGCTCCACCTCTTGGTCCACGACCTCCCTCATCAGCTCCTCTTGGTCCA

               351    -    401
UN09864        --> CGACCTCCTCTTCCACCACGGTAACCACCTCTGTACCTCTCTCCATTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- CGACCTCCTCTTCCACCACGGTAACCACCTCTGTACCTCTCTCCATTGGC
EV551880       <-- CGACCTCCTCTTCCACCACGGTAACCACCTCTGTACCTCTCTCCATTGGC
EX905360       <-- CGACCTCCTCTTCCACCACGGTAACCACCc....................
FY444611       <-- ..................................................
FY448006       <-- ..................................................
FY449817       <-- ..................................................
FY452549       <-- ..................................................
EY912442       --> CGACCTCCTCTTCCACCACGGTAACCACCTCTGTACCTCTCTCCATTGGC
FD959883       --> CGACCTCCTCTTCCACCACGGTAA..........................
EV546903       --> CGACCTCCTCTTCCACCACGGTAACCACCTCTGTACCTCTCTCCATTGGC
FY429041       --> CGACCTCCTCTTCCACCACGGTAACCACCTCTGT................
FY430525       --> CGACCTCCTCTTCCACCACGGTAACCACCTCTGTACCTCTCTCCATTCGC
FY441052       --> CGACCTCCTCTTCCACCACGGTAACCACCTCTGTACCTCTCTCCATTCGC

               401    -    451
UN09864        --> AGGTTTCAGGAACTCGTTTATGCTCAACGACTTCTTGGTCTTCTCTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- AGGTTTCAGGAACTCGTTTATGCTCAACGACTTCTTGGTCTTCTCTTCCT
EV551880       <-- AGGTTTCAGGAACTCGTTTATGCTCAACGACTTCTTGGTCTTCTCTTCCT
EX905360       <-- ..................................................
FY444611       <-- ..................................................
FY448006       <-- ..................................................
FY449817       <-- ..................................................
FY452549       <-- ..................................................
EY912442       --> AGGTTTCAGGAACTCGTTTATGCTCAACGACTTCTTGGTCTTCTCTTCCT
FD959883       --> ..................................................
EV546903       --> AGGTTTCAGGAACTCGTTTATGCTCAACGACTTCTTGGTCTTCTCTTCCT
FY429041       --> ..................................................
FY430525       --> AGGTTTCAGGAACTCATTTATGCTCAACGACTTCTTGGTCTTCTCTTCCT
FY441052       --> AGGTTTCAGGAACTCATTTATGCTCAACGACTTCTTGGTCTTCTCTTCCT

               451    -    501
UN09864        --> TCTCAACTGGGCGCTTGTCCTTGTCTGTTCCCAGCTTGATGAAGACCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- TCTCAACTGGGCGCTTGTCCTTGTCTGTTCCCAGCTTGATGAAGACCTCA
EV551880       <-- TCTCAACTGGGCGCTTGTCCTTGTCTGTTCCCAGCTTGATGAAGACCTCA
EX905360       <-- ..................................................
FY444611       <-- ..................................................
FY448006       <-- ..................................................
FY449817       <-- ..................................................
FY452549       <-- ..................................................
EY912442       --> TCTCAACTGGGCGCTTGTCCTTGTCTGTTCCCAGCTTGATGAAGACCTCA
FD959883       --> ..................................................
EV546903       --> TCTCAACTGGGCGCTTGTCCTTGTCTGTTCCCAGCTTGATGAAGACCTCA
FY429041       --> ..................................................
FY430525       --> TCTCAGCTGGGCGCTTGTCCTTGTCTGTTCCCAGCTTGATGAAGACCTCA
FY441052       --> TCTCAGCTGGGCGCTTGTCCTTGTCTGTTCCCAGCTTGATGAAGACCTCA

               501    -    551
UN09864        --> TCGTTGTTGCTCTTTTTGCTAGAGAGCTGTTGCATGGACTCAAAGACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- TCGTTGTTGCTCTTTTTGCTAGAGAGCTGTTGCATGGACTCAAAGACTTT
EV551880       <-- TCGTTGTTGCTCTTTTTGCTAGAGAGCTGTTGCATGGACTCAAAGACTTT
EX905360       <-- ..................................................
FY444611       <-- .................GCTAGAGAGCTGTTGCATGGACTCAAAGACTTT
FY448006       <-- .................GCTAGAGAGCTGTTGCATGGACTCAAAGACTTT
FY449817       <-- .................GCTAGAGAGCTGTTGCATGGACTCAAAGACTTG
FY452549       <-- .................................tgGGACTCAAAGACTTT
EY912442       --> TCGTTGTTGCTCTTTTTGCTAGAGAGCTGTTGCATGGACTCAAAGACTTT
FD959883       --> ..................................................
EV546903       --> TCGTTGTTGCTCTTTTTGCTAGAGAGCTGTTGCATGGACTCAAAGACTTT
FY429041       --> ..................................................
FY430525       --> TCGTTGTTGCTCTTTTTGCTAGAGAGCTGTTGCATGGACTCAAAGACTTT
FY441052       --> TCGTTGTTGCTCTTTTTGCTAGAGAGCTGTTGCATGGACTCAAAGACTTT

               551    -    601
UN09864        --> GGTGTCAACCTTCCTCTCCTCAATCTTGGTTGCCTGCAGAGCTTTCCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- GGTGTCAACCTTCCc...................................
EV551880       <-- GGTGTCAACCTTCCTCTCCTCAATCTTGGTTGCCTGCAGAGCTTTCCTCT
EX905360       <-- ..................................................
FY444611       <-- GGTGTCAACCTTCCTCTCCTCAATCTTGGTTGCCTGCAGAGCTTTCCTCT
FY448006       <-- GGTGTCAACCTTCCTCTCCTCAATCTTGGTTGCCTGCAGAGCTTCCCTCT
FY449817       <-- GGTGTCAACCTTCCTCTCCTCAATCTTGGTTGCCTGCAGAGCTTTCCTCT
FY452549       <-- GGTGTCAACCTTCCTCTCCTCAATCTTGGTTGCCTGCAGAGCTTTCCTCT
EY912442       --> GGTGTCAACCTTCCc...................................
FD959883       --> ..................................................
EV546903       --> GGTGTCAACCTTCCTCTCCTCAATCTTGGTTGCCTGCAGAGCTTTCCTCT
FY429041       --> ..................................................
FY430525       --> GGTGTCAACCTTCCTCTCCTCAATCTTGGTTGCCTGCAGAGCTTTCCTCT
FY441052       --> GGTGTCAACCTTCCTCTCCTCAATCTTGGTTGCCTGCAGAGCTTTCCTCT

               601    -    651
UN09864        --> TCTCTTCCAAAACCTTCTCATACTCTTCAAGAGTCATCTCCTTGTCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- TCTCTTCCAAAACCTTC-CATACTCTTCAAGAGTCATCTCCTTGTCCTCA
EX905360       <-- ..................................................
FY444611       <-- TCTCTTCCAAAACCTTCTCATACTCTTCAAGAGTCATCTCCTTGTCCTCA
FY448006       <-- TCTCTTCCAAAACCTTCTCATACTCTTCAAGAGTCATCTCCTTGTCCTCA
FY449817       <-- TCTCTTCCAAAACCTTCTCATACTCTTCAAGAGTCATCTCCTTGTCCTCA
FY452549       <-- TCTCTTCCAAAACCTTCTCATACTCTTCAAGAGTCATCTCCTTGTCCTCA
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> TCTCTTCCAAAACCTTC-CATACTCTTCAAGAGTCATCTCCTTGTCCTCA
FY429041       --> ..................................................
FY430525       --> TCTCTTCCAAAACCTTCTCATACTCTTCAAGAGTCATCTCCTTGTCCTCA
FY441052       --> TCTCTTCCAAAACCTTCTCATACTCTTCAAGAGTCATCTCCTTGTCCTCA

               651    -    701
UN09864        --> GGCTCTTTCTCTGCTTGAGCTTCCACAAGTGTCTCTTTGTTAGCATCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- GGCTCTTTCTCTGCTTGAGC..............................
EX905360       <-- ..................................................
FY444611       <-- GGCTCTTTCTCTGCTTGAGCTTCCACAAGTGTCTCTTTGTTAGCATCAGT
FY448006       <-- GGCTCTTTCTCTGCTTGAGCTTCCACAAGTGTCTCTTTGTTAGCATCAGT
FY449817       <-- GGCTCTTTCTCTGCTTGAGCTTCCACAAGTGTCTCTTTGTTAGCATCAGT
FY452549       <-- GGCTCTTTCTCTGCTTGAGCTTCCACAAGTGTCTCTTTGTTAGCATCAGT
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> GGCTCTTTCTCTGCTTGAGC..............................
FY429041       --> ..................................................
FY430525       --> GGCTCTTTCTCTGCTTGAGCTTCCACAAGTGTCTCTTTGTTAGCATCAGT
FY441052       --> GGCTCTTTCTCTGCTTGAGCTTCCACAAGTGTCTCTTTGTTAGCATCAGT

               701    -    751
UN09864        --> TGCTTCACCTTCACCACCTTCCTTCTCAACAGCCACCACTGTTGTGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- TGCTTCACCTTCACCACCTTCCTTCTCAACAGCCACCACTGTTGTGGATT
FY448006       <-- TGCTTCACCTTCACCACCTTCCTTCTCAACAGCCACCACTGTTGTGGATT
FY449817       <-- TGCTTCACCTTCACCACCTTCCTTCTCAACAGCCACCACTGTTGTGGATT
FY452549       <-- TGCTTCACCTTCACCACCTTCCTTCTCAACAGCCACCACTGTTGTGGATT
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> TGCTTCACCTTCACCACCTTCCTTCTCAACAGCCACCACTGTTGTGGATT
FY441052       --> TGCTTCACCTTCACCACCTTCCTTCTCAACAGCCACCACTGTTGTGGATT

               751    -    801
UN09864        --> CTTCAGTCACCGGAGGAATCTCATCCTCGATGGTTCCCCAGTTGCCACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- CTTCAGTCACCGGAGGAATCTCATCCTCGATGGTTCCCCAGTTGCCACGG
FY448006       <-- CTTCAGTCACCGGAGGAATCTCATCCTCGATGGTTCCCCAGTTGCCACGG
FY449817       <-- CTTCAGTCACCGGAGGAATCTCATCCTCGATGGTTCCCCAGTTGCCACGG
FY452549       <-- CTTCAGTCACCGGAGGAATCTCATCCTCGATGGTTCCCCAGTTGCCACGG
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> CTTCAGTCACCGGAGGAATCTCATCCTCGATGGTTCCCCAGTTGCCACGG
FY441052       --> CTTCAGTCACCGGAGGAATCTCATCCTCGATGGTTCCCCAGTTGCCACGG

               801    -    851
UN09864        --> CCAGCACCATCACGTTTGAACTCATTTCCGTGACCGGTTCCACTGTGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- CCAGCACCATCACGTTTGAACTCATTTCCGTGACCGGTTCCACTGTGACG
FY448006       <-- CCAGCACCATCACGTTTGAACTCATTTCCGTGACCGGTTCCACTGTGACG
FY449817       <-- CCAGCACCATCACGTTTGAACTCATTTCCGTGACCGGTTCCACTGTGACG
FY452549       <-- CCAGCACCATCACGTTTGAACTCATTTCCGTGACCGGTTCCACTGTGACG
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> CCAGCACCATCACGTTTGAACTCATTTCCGTGACCGGTTC..........
FY441052       --> CCAGCACCATCACGTTTGAACTCATTTCCGTGACCGGTTCCACTGTGACG

               851    -    901
UN09864        --> TTCAAAGTTCCTACGAGGGCGCTCTACGTCACCAGAATCTCCGTGGCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- TTCAAAGTTCCTACGAGGGCGCTCTACGTCACCAGAATCTCCGTGGCGAC
FY448006       <-- TTCAAAGTTCCTACGAGGGCGCTCTACGTCACCAGAATCTCCGTGGCGAC
FY449817       <-- TTCAAAGTTCCTACGAGGGCGCTCTACGTCACCAGAATCTCCGTGGCGAC
FY452549       <-- TTCAAAGTTCCTACGAGGGCGCTCTACGTCACCAGAATCTCCGTGGCGAC
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> ..................................................
FY441052       --> TTCAAAGTTCCTACGAGGGCGCTCTACGTCACCAGAATCTCCGTGGCGAC

               901    -    951
UN09864        --> CACCACCGCGTCCACCACGTTGGTATCCACCACGTCTCCCTGCATCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- CACCACCGCGTCCACCACGTTGGTATCCACCACGTCTCCCTGCATCTCCT
FY448006       <-- CACCACCGCGTCCACCACGTTGGTATCCACCACGTCTCCCTGCATCTCCT
FY449817       <-- CACCACCGCGTCCACCACGTTGGTATCCACCACGTCTCCCTGCATCTCCT
FY452549       <-- CACCACCGCGTCCACCACGTTGGTATCCACCACGTCTCCCTGCATCTCCT
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> ..................................................
FY441052       --> CACCACCGCGTCCACCACGTTG............................

               951    -   1001
UN09864        --> CCTTCAGAGCGTCTGTAGCCTCCAACGTAGCCGTTCTCATTAGCAGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- CCTTCAGAGCGTCTGTAGCCTCCAACGTAGCCGTTCTCATTAGCAGGAGC
FY448006       <-- CCTTCAGAGCGTCTGTAGCCTCCAACGTAGCCGTTCTCATTAGCAGGAGC
FY449817       <-- CCTTCAGAGCGTCTGTAGCCTCCAACGTAGCCGTTCTCATTAGCAGGAGC
FY452549       <-- CCTTCAGAGCGTCTGTAGCCTCCAACGTAGCCGTTCTCATTAGCAGGAGC
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> ..................................................
FY441052       --> ..................................................

               1001   -   1051
UN09864        --> ATCACTGTTCCTGGATTCCCTGTTGAATCCACCACTTCTTCCACGGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- ATCACTGTTCCTGGATTCCCTGTTGAATCCACCACTTCTTCCACGGCCAC
FY448006       <-- ATCACTGTTCCTGGATTCCCTGTTGAATCCACCACTTCTTCCACGGCCAC
FY449817       <-- ATCACTGTTCCTGGATTCCCTGTTGAATCCACCACTTCTTCCACGGCCAC
FY452549       <-- ATCACTGTTCCTGGATTCCCTGTTGAATCCACCACTTCTTCCACGGCCAC
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> ..................................................
FY441052       --> ..................................................

               1051   -   1101
UN09864        --> CACCACGTGGTCCACCATTGCGACCTCCTCTGGCTTCCCTCACAGCTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- CACCACGTGGTCCACCATTGCGACCTCCTCTGGCTTCCCTCACAGCTTGG
FY448006       <-- CACCACGTGGTCCACCATTGCGACCTCCTCTGGCTTCCCTCACAGCTTGG
FY449817       <-- CACCACGTGGTCCACCATTGCGACCTCCTCTGGCTTCCCTCACAGCTTGG
FY452549       <-- CACCACGTGGTCCACCATTGCGACCTCCTCTGGCTTCCCTCACAGCTTGG
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> ..................................................
FY441052       --> ..................................................

               1101   -   1151
UN09864        --> GAAGGAGGAGTGGGCTTAGTGGGCAGCTTAGCAGGCTGAGCTGGAGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- GAAGGAGGAGTGGGCTTAGTGGGCAGCTTAGCAGGCTGAGCTGGAGCAGC
FY448006       <-- GAAGGAGGAGTGGGCTTAGTGGGCAGCTTAGCAGGCTGAGCTGGAGCAGC
FY449817       <-- GAAGGAGGAGTGGGCTTAGTGGGCAGCTTAGCAGGCTGAGCTGGAGCAGC
FY452549       <-- GAAGGAGGAGTGGGCTTAGTGGGCAGCTTAGCAGGCTGAGCTGGAGCAGC
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> ..................................................
FY441052       --> ..................................................

               1151   -   1201
UN09864        --> TTTCTCAACCTTCAATGGCTTAGCAGCAGCGAGCAGGGTTGGATCCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- TTTCTCAACCTTCAATGGCTTAGCAGCAGCGAGCAGGGTTGGATCCTCTG
FY448006       <-- TTTCTCAACCTTCAATGGCTTAGCAGCAGCGAGCAGGGTTGGATCCTCTG
FY449817       <-- TTTCTCAACCTTCAATGGCTTAGCAGCAGCGAGCAGGGTTGGATCCTCTG
FY452549       <-- TTTCTCAACCTTCAATGGCTTAGCAGCAGCGAGCAGGGTTGGATCCTCTG
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> ..................................................
FY441052       --> ..................................................

               1201   -   1251
UN09864        --> TGTCATCGTCCAACAGATCGAAAGGGTTCAAAGTCGTCATTTCACAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- TGTCATCGTCCAACAGATCGAAAGGGTTCAAAGTCGTCATTTCACAAGAC
FY448006       <-- TGTCATCGTCCAACAGATCGAAAGGGTTCAAAGTCGTCATTTCACAAGAC
FY449817       <-- TGTCATCGTCCAACAGATCGAAAGGGTTCAAAGTCGTCATTTCACAAGAC
FY452549       <-- TGTCATCGTCCAACAGATCGAAAGGGTTCAAAGTCGTCATTTCACAAGAC
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> ..................................................
FY441052       --> ..................................................

               1251   -   1301
UN09864        --> CAACTAGTCCCCGAGGTTATTGTTTTTGAAGATGAAAACCCCAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- CAACTAGTCCCCGAGGTTATTGTTTTTGAAGATGAAAACCCCAAAAAAAA
FY448006       <-- CAACTAGTCCCCGAGGTTATTGTTTTTGAAGATGAAAACCCCAAAAAAAA
FY449817       <-- CAACTAGTCCCCGAGGTTATTGTTTTTGAAGATGAAAACCCCAAAAAAAA
FY452549       <-- CAACTAGTCCCCGAGGTTATTGTTTTTGAAGATGAAAACCCCAAAAAAAA
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> ..................................................
FY441052       --> ..................................................

               1301   -   1351
UN09864        --> AGAATCAGAAAATAGAAGATATGGTTCGGACAGAACCAAACTAAGTGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ..................................................
EV551880       <-- ..................................................
EX905360       <-- ..................................................
FY444611       <-- AGAATCAGAAAATAGAAGATATGGTTCGGACAGAACCAAACTAAGTGTAG
FY448006       <-- AGAATCAGAAAATAGAAGATATGGTTCGGACAGAACCAAACTAAGTGTAG
FY449817       <-- -GAATCAGAAAATAGAAGATATGGTTCGGACAGAACCAAACTAAGTGTAG
FY452549       <-- AGAATCAGAAAATAGAAGATATGGTTCGGACAGAACCAAACTAAGTGTAG
EY912442       --> ..................................................
FD959883       --> ..................................................
EV546903       --> ..................................................
FY429041       --> ..................................................
FY430525       --> ..................................................
FY441052       --> ..................................................

               1351   -   1401
UN09864        --> GGAGAAAGAGGAAGAAGCTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~
EY916834       <-- ......................
EV551880       <-- ......................
EX905360       <-- ......................
FY444611       <-- GGAGAAAG..............
FY448006       <-- GGAGAAAGAGGAAGAAGCTGCG
FY449817       <-- GGAGAAA...............
FY452549       <-- GGAGA.................
EY912442       --> ......................
FD959883       --> ......................
EV546903       --> ......................
FY429041       --> ......................
FY430525       --> ......................
FY441052       --> ......................