1      -     51
UN09966        --> AAAAAACGTAATAATCTTTATATAAATTTTATTGTCTGTTGTGGACATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- ..................................................
FD557502       <-- ..................................................
FD557361       <-- ..................................................
FD934556       --> AAAAAACGTAATAATCTTTATATAAATTTTATTGTCTGTTGTGGACATGT
FD553480       --> .......GTAATAATCTTTATATAAATTTTATTGTCTGTTGTGGACATGT
FD553596       --> .......GTAATAATCTTTATATAAATTTTATTGTCTGTTGTGGACATGT
FD530018       --> ................................TGTCTGTTGTGGACATGT
FD529851       --> .................................GTCTGTTGTGGATATGT
FD530779       --> ...................................CTGTTGTGGACATGT
EY893290       --> ..................................ctgtTTGTGGACATGT
EY893979       --> ..................................................
EX767464       --> ..................................................

               51     -    101
UN09966        --> ACATAAAACATTTTGTCATAAAATTTTGAAGCTATTAGTTTTATCAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- ....................................AGTTTTATCAAAAA
FD557502       <-- ..................................................
FD557361       <-- ..................................................
FD934556       --> ACATAAAACATTTTGTCATAAAATTTTGAAGCTATTAGTTTTATCAAAAA
FD553480       --> ACATAAAACATTTTGTCATAAAATTTTGAAGCTATTAGTTTTATCAAAAA
FD553596       --> ACATAAAACATTTTGTCATAAAATTTTGAAGCTATTAGTTTTATCAAAAA
FD530018       --> ACATAAAACATTTTGTCATAAAATTTTGAAGCTATTAGTTTTATCAAAAA
FD529851       --> ACATAAAACATTTTGTCATAAAATTTTGAAGCTATTAGTTTTATCAAAAA
FD530779       --> ACATAAAACATTTTGTCATAAAATTTTGAAGCTATTAGTTTTATCAAAAA
EY893290       --> ACATAAAACATTTTGTCATAAAATTTTGAAGCTATTAGTTTTATCAAAAA
EY893979       --> ..............GTCATAAAATTTTGAAGCTATTAGTTTTATCAAAAA
EX767464       --> ...............TCATAAAATTTTGAAGCTATTAGTTTTATCAAAAA

               101    -    151
UN09966        --> AAATTTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- AA-TTTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus sativus var. oleiformis
FD557502       <-- ....TTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus raphanistrum subsp. landra
FD557361       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD934556       --> AATTTTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus sativus var. oleiformis
FD553480       --> AA-TTTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus raphanistrum subsp. landra
FD553596       --> AA-TTTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus raphanistrum subsp. landra
FD530018       --> AAAATTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus raphanistrum subsp. maritimus
FD529851       --> AAAATTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus raphanistrum subsp. maritimus
FD530779       --> AAAATTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus raphanistrum subsp. maritimus
EY893290       --> AAAATTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus raphanistrum subsp. maritimus
EY893979       --> AAAATTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus raphanistrum subsp. maritimus
EX767464       --> AATTTTTTTGAAGCTATTAGCCGATTATCGATATTGTTCCCCACCGATCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN09966        --> AACCTCTTTTGTATTTTTTTTTTTTT------GTATTTTATCTTCCTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- AACCTCTTTTGTATTTTTTTTTTTTT----TTGTATCTTATCTTCCTTAC
FD557502       <-- AAC-TCTTTTGTATTTTTTTTTTTT-------GTATTTTATCTTCCTTAC
FD557361       <-- ..................................................
FD934556       --> AACCTCTTTTGTATTTTTTTTTTTTT------GTATTTTATCTTCCTTAC
FD553480       --> AACCTCTTTTGTATTTTTTTTTTTTT------GTATTTTATCTTCCTTAC
FD553596       --> AACCTCTTTTGTATTTTTTTTTTTTT------GTATTTTATCTTCCTTAC
FD530018       --> AACCTCTTTTGTATTTTTTTTTTTTT------GTATTTTATCTTCCTTAC
FD529851       --> AACCTCTTTTGTATTTTTTTTTTTTT----TTGTATTTTATCTTCCTTAC
FD530779       --> AACCTCTTTTGTATTTTTTTTTTTTTTTTTTTGTATTTTATCTTCCTTAC
EY893290       --> AACCTCTTTTGTATTTTTTTTTTTTT---TTTGTATTTTATCTTCCTTAC
EY893979       --> AACCTCTTTTGTATTTTTTTTTTTTT------TTTTTTTgtattttatct
EX767464       --> AACCTCTTTTGTATTTTTTTTTTTTT--TTTTGTATTTTATCTTCC....

               201    -    251
UN09966        --> GACTTACTTATTTATTTTTCCCTGGACATATATAATAATTAACGTTATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- GACTTACTTATTTATTTTTCCCTGGACATATATAATAATTAACGTTATGT
FD557502       <-- GACTTACTTATTTATTTTTCCCTGGACATATATAATAATTAACGTTATGT
FD557361       <-- ..................................................
FD934556       --> GACTTACTTATTTATTTTTCCCTGGACATATATAATAATTAACGTTATGT
FD553480       --> GACTTACTTATTTATTTTTCCCTGGACATATATAATAATTAACGTTATGT
FD553596       --> GACTTACTTATTTATTTTTCCCTGGACATATATAATAATTAACGTTATGT
FD530018       --> GACTTACTTATTTATTTTTCCCTGGACATATATAATAATTAACGTTATGT
FD529851       --> GACTTACTTATTTATTTTTCCCTGGACATATATAATAATTAACGTTATGT
FD530779       --> GACTTACTTATTTATTTTTCCCTGGACATATATAATAATTAACGTTATGT
EY893290       --> GACTTACATATTTATTTTTCCCTGGACATATATAATAATTAACGTTATGT
EY893979       --> tcctta............................................
EX767464       --> ..................................................

               251    -    301
UN09966        --> AATTTCAATAACATTCAGGACTTTGGTACTTAAAGCGATCAGTGCAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- AATTTCAATAACATTCAGGACTTTGGTACTTAGAGCGATCAGTGCAATAG
FD557502       <-- AATTTCAATAACATTCAGGACTTTGGTACTTAGAGCGATCAGTGCAATAG
FD557361       <-- ..................................................
FD934556       --> AATTTCAATAACATTCAGGACTTTGGTACTTAAAGCGATCAGTGCAATAG
FD553480       --> AATTTCAATAACATTCAGGACTTTGGTACTTAAAGCGATCAGTGCAATAG
FD553596       --> AATTTCAATAACATTCAGGACTTTGGTACTTAGAGCGATCAGTGCAATAG
FD530018       --> AATTTCAATAACATTCAGGACTTTGGTACTTAAAGCGATCAGTGCAATAG
FD529851       --> AATTTCAATAACATTCAGGACTTTGGTACTTAGAGCGATCAGTGCAATAG
FD530779       --> AATTTCAATAACATTCAGGACTTTGGTACTTAAAGCGATCAGTGCAATAG
EY893290       --> AATTTCAATAACATTCAGGACTTTGGTACTTAAAGCGATCAGTGCAATAG
EY893979       --> ..................................................
EX767464       --> ..................................................

               301    -    351
UN09966        --> TCATAGTTCATGTACTTATTTCTGAAATGCTCATAAATTTTCTGTTCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- TCATAGTTCATGTACTTATTTCTGAAATGCTCATAGATTTTCTGTTCGTA
FD557502       <-- TCATAGTTCATGTACTTATTTCTGAAATGCTCATAGATTTTTTGTTTGTA
FD557361       <-- ..................................................
FD934556       --> TCATAGTTCATGTACTTATTTCTGAAATGCTCATAAATTTTCTGTTCGTA
FD553480       --> TCATAGTTCATGTACTTATTTCTGAAATGCTCATAAATTTTTTGTTTGTA
FD553596       --> TCATAGTTCATGTACTTATTTCTGAAATGCTCATAGATTTTTTGTTTGTA
FD530018       --> TCATAGTTCATGTACTTATTTCTGAAATGCTCATAAATTTTCTGTTCGTA
FD529851       --> TCATAGTTCATGTACTTATTTCTGAAATGCTCATAGATTTTCTGTTCGTA
FD530779       --> TCATAGTTCATGTACTTATTTCTGAAATGCTCATAAATTTTCTGTTCGTA
EY893290       --> TCATAGTTCATGTACTTATTTCTGAAATGCTCATAAATTTTCTGTTCGTA
EY893979       --> ..................................................
EX767464       --> ..................................................

               351    -    401
UN09966        --> TCCCCTTAGCCTTTGATATTTGCCTCCATTCCACCAATAGTTGGAAAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- TCCCCTTAGCCTTTGATATTTGCCTCCATTCCACCAATAGTTGG......
FD557502       <-- TCCCCTTAGCCTTTGATATTTGCCTCCATTCCACCAATAGTTGGAAGATC
FD557361       <-- ..................................................
FD934556       --> TCCCCTTAGCCTTTGATATTTGCCTCCATTCCACCAATAGTTGGAAAATC
FD553480       --> TCCCCTTAGCCTTTGATATTTGCCTCCATTCCACCAATAGTTGGAAAATC
FD553596       --> TCCCCTTAGCCTTTGATATTTGCCTCCATTCCACCAATAGTTGGAAGATC
FD530018       --> TCCCCTTAGCCTTTGATATTTGCCTCCATTCCACCAATAGTTGGAAAATC
FD529851       --> TCCCCTTAGCCTTTGATATTTGCCTCCATTCCACCAATAGTTGGAAGATC
FD530779       --> TCCCCTTAGCCTTTGATATTTGCCTCCATTCCACCAATAGTTGGAAAATC
EY893290       --> TCCCCTTAGCCTTTGATATTTGCCTCCATTCCACCAATAGTTGGAAAATC
EY893979       --> ..................................................
EX767464       --> ..................................................

               401    -    451
UN09966        --> CACAAGTGGCAACGTTATCACTCCGACCATCTACGTAGCAGCCTGAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- ..................................................
FD557502       <-- CACAAGTGGCAACGTTATCACTCCGACCATCTACGTAGCAGCCTGAGAGG
FD557361       <-- ..................................................
FD934556       --> CACAAGTGGCAACGTTATCACTCCGACCATCTACGTAGCAGCCTGAGAGG
FD553480       --> CACAAGTGGCAACGTTATCACTCCGACCATCTACGTAGCAGCCTGAGAGG
FD553596       --> CACAAGTGGCAACGTTATCACTCCGACCATCTACGTAGCAGCCTGAGAGG
FD530018       --> CACAAGTGGCAACGTTATCACTCCGACCATCTACGTAGCAGCCTGAGAGG
FD529851       --> CACAAGTGGCAACGTTATCACTCCGACCATCTACGTAGCAGCCTGAGAGG
FD530779       --> CACAAGTGGCAACGTTATCACTCCGACCATCTACGTAGCAGCCTGAAAGG
EY893290       --> CACAAGTGGCAACGTTATCACTCCGGCCATCTACGTAGCAGCCTGAAAGG
EY893979       --> ..................................................
EX767464       --> ..................................................

               451    -    501
UN09966        --> CCGGAAAAGTCTTGGAAATGGGCGATGAAAGGAGAAAATGCATAGTTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- ..................................................
FD557502       <-- CCGGAGAAGTCTTGGAAATGGGCGATGAAAGGAGAAAATGCATAGTTAAT
FD557361       <-- .........TCTTGGAAATGGGCGATGAAAGGAGAAAATGCATAGTTAAT
FD934556       --> CCGGAAAAGTCTTGGAAATGGGCGATGAAAGGAGAAAATGCATAGTTAAT
FD553480       --> CCGGAAAAGTCTTGGAAATGGGCGATGAAAGGAGAAAATGCATAGTTAAT
FD553596       --> CCGGAAAAGTCTTGGAAATGGGCGATGAAAGGAGAAAATGCATAGTTAAT
FD530018       --> CCGGAAAAGTCTTGGAAATGGGCGATGAAAGGAGAAAATGCATAGTTAAT
FD529851       --> CCGGAAAAGTCTTGGAAATGGGCGATGAAAGGAGAAAATGCATAGTTAAT
FD530779       --> CCGGAAAAGTCTTGGAAATGGGCGATGAAAGGAGAAAATGCATAGTTAAT
EY893290       --> CCGGAAAAGTCTTGGAAATGGGCGATGAAAGGAGAAAATGCATAGTTAAT
EY893979       --> ..................................................
EX767464       --> ..................................................

               501    -    551
UN09966        --> CTTGGTCCGACCGCCATCAGTCGCCCAAGAGTCACCGTTCCAGAGACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- ..................................................
FD557502       <-- CTTGGTCCGACCGCCATCAGTCGCCCAAGAGTCACCGTTCCAGAGACTGG
FD557361       <-- CTTGGTCCGACCGCCATCAGTCGCCCAAGAGTCACCGTTCCAGAGACTGG
FD934556       --> CTTGGTCCGACCGCC...................................
FD553480       --> CTTGGTCCGACCGCCATCAGTCGCCCAAGAGTCACCGTTCCAGAAACTGG
FD553596       --> CTTGGTCCGACCGCCATCAGTCGCCCAAGAGTCACCGTTCCAGAAACTGG
FD530018       --> CTTGGTCCGACCGCCATCAGTCGCCCAAGAGT..................
FD529851       --> CTTGGTCCGACCGCCATCAGTCGCCCAAGAGTCACCGTTCCAGAGACTGG
FD530779       --> CTTGGTCCGACCGCCATCAGTCCCCCA.......................
EY893290       --> CTTGGTCCGACCGCCATCAGTCGCCCAAGAGTCACCGTT...........
EY893979       --> ..................................................
EX767464       --> ..................................................

               551    -    601
UN09966        --> CTTCTACTTTCATCGGCTTTGATGGATAGTTAACACCTTTCTCGTTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- ..................................................
FD557502       <-- CTTCTACTTTCATCGGCTTTGATGGATAGTTAACACCTTTCTCGTTCTTG
FD557361       <-- CTTCTACTTTCATCGGCTTTGATGGATAGTTAACACCTTTCTCGTTCTTG
FD934556       --> ..................................................
FD553480       --> CTTCTACTTTCATCGGCTTTGATGGATAGTTAACACCTTTCTCGTTCTTG
FD553596       --> CTTCTACTTTCATCGGCTTTGATGGATAGTTAACACCTTTCTCGTTCTTG
FD530018       --> ..................................................
FD529851       --> CTTCTACTTTCATCGGCTTTGATGGATAGTTAACACCTTTCTCGTTCTTG
FD530779       --> ..................................................
EY893290       --> ..................................................
EY893979       --> ..................................................
EX767464       --> ..................................................

               601    -    651
UN09966        --> TACACTCTTATTGGGACGTTGTCAACGTAAAACACAATTTGGTAAGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- ..................................................
FD557502       <-- TACACTCTTATTGGGACGTTGTCAACGTAAAACACAATTTGGTAAGGGTT
FD557361       <-- TACACTCTTATTGGGACGTTGTCAACGTAAAACACAATTTGGTAAGGGTT
FD934556       --> ..................................................
FD553480       --> TACACTCTTATTGGGACGTTGTCAACGTAAAACACAATTTGGTAAGGGTT
FD553596       --> TACACTCTTATTGGGACGTTGTCAACGTAAAACACAATTTGGTAAGGGTT
FD530018       --> ..................................................
FD529851       --> TACACTCTTATTGGGACGTTGTCAACGTAAAACACAATTTGGTAAGGGTT
FD530779       --> ..................................................
EY893290       --> ..................................................
EY893979       --> ..................................................
EX767464       --> ..................................................

               651    -    701
UN09966        --> CCAAAGAATCCCATAAGTGTGGTAATGTTTGATGGGGTTAAACCAAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- ..................................................
FD557502       <-- CCAAAGAATCCCATAAGTGTGGTAATGTTTGATGGGGTTAAACCAAAGCA
FD557361       <-- CCAAAGAATCCCATAAGTGTGGTAATGTTTGATGGGGTTAAACCAAAGCA
FD934556       --> ..................................................
FD553480       --> CCAAAGAATCCCATAAGTGTGGTAATGTTTGATGGGGTTAAACCAAAGCA
FD553596       --> CCAAAGAATCCCATAAGTGTGGTAATGTTTGATGGGGTTAAACCAAAGCA
FD530018       --> ..................................................
FD529851       --> CCAAAGAATCCCATAAGTGTGGTAATGTTTGATGGGGTTAAACCAAAGCA
FD530779       --> ..................................................
EY893290       --> ..................................................
EY893979       --> ..................................................
EX767464       --> ..................................................

               701    -    751
UN09966        --> AGAACCT--GTTCTCTGTTTCCTTCTCCATTCGCAAAGATATTTGTCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- ..................................................
FD557502       <-- AGAACCT--GTTCTCTGTTTCCTTCTCCATTCGCAAAGATATTTGTCTGT
FD557361       <-- AGAACCT--GTTCTCTGTTTCCTTCTCCATTCGCAAAGATATTTGTCTGT
FD934556       --> ..................................................
FD553480       --> AGAACCT--GTTCTCTGTTTCCTTCTCCATT...................
FD553596       --> AGAACCT--GTTCTCTGTTTCCTTCTCCATT...................
FD530018       --> ..................................................
FD529851       --> AGAACCTCTGTTCTCTGTTTCCTTCTCCATTCGCAAAGATATTTGTCTG.
FD530779       --> ..................................................
EY893290       --> ..................................................
EY893979       --> ..................................................
EX767464       --> ..................................................

               751    -    801
UN09966        --> AACGTTATTGGTTTTCCATCGTAGTTGCCTAAGAACTCGAAGTCAATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715815       <-- ..................................................
FD557502       <-- AACGTTATTGGTTTTCCATCGTAG..........................
FD557361       <-- AACGTTATTGGTTTTCCATCGTAGTTGCCTAAGAACTCGAAGTCAATCTC
FD934556       --> ..................................................
FD553480       --> ..................................................
FD553596       --> ..................................................
FD530018       --> ..................................................
FD529851       --> ..................................................
FD530779       --> ..................................................
EY893290       --> ..................................................
EY893979       --> ..................................................
EX767464       --> ..................................................

               801    -    851
UN09966        --> ATCGC
                   ~~~~~
EW715815       <-- .....
FD557502       <-- .....
FD557361       <-- ATCGC
FD934556       --> .....
FD553480       --> .....
FD553596       --> .....
FD530018       --> .....
FD529851       --> .....
FD530779       --> .....
EY893290       --> .....
EY893979       --> .....
EX767464       --> .....