RadishBase

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Alignment for radish unigene UN09975

               1      -     51
UN09975        --> GGGTCCTTCTTTCATCTGCTGTTACAAACCTTAACTTTGATCCTGTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ..................................................
EV572972       <-- ..................................................
FD983905       <-- ..................................................
EV530972       <-- ..................................................
EV524807       --> GGGTCCTTCTTTCATCTGCTGTTACAAACCTTAACTTTGATCCTGTCTGG
EY898680       --> GGGTCCTTCTTTCATCTGCTGTTACAAACCTTAACTTTGATCCTGTCTGG
FD987949       --> ...........ggATCTGCTGTTACAA-CCTTAACTTTGATCCTGCCTGG
FY436665       --> ...........................ACCTTAACTTTGATCCTGTCTGG
FY436775       --> .............................CTTAACTTTGATCCTGTCTGG
FY435917       --> ..................................................
FY434605       --> ..................................................
EV526517       --> ..................................................

               51     -    101
UN09975        --> TCACCATGGCTTCAGCTACTTTCTCTGTCCCCAAACCATCTCTTCAGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ..................................................
EV572972       <-- ..................................................
FD983905       <-- ..................................................
EV530972       <-- ..................................................
EV524807       --> TCACCATGGCTTCAGCTACTTTCTCTGTCCCCAAACCATCTCTTCAGGGT
EY898680       --> TCACCATGGCTTCAGCTACTTTCTCTGTCCCCAAACCATCTCTTCAGGGT
FD987949       --> TCACCATGGCTTCAGCTACTTTCTCTGTCCCCAAACCATCTCTTCAGGGT
FY436665       --> TCACCATGGCTTCAGCTACTTTCTCTGTCCCCAAACCATCTCTTCAGGGT
FY436775       --> TCACCATGGCTTCAGCTACTTTCTCTGTCCCCAAACCATCTCTTCAGGGT
FY435917       --> .....ATGGCTTCAGCTACTTTCTCTGTCCCCAAACCATCTCTTCAGGGT
FY434605       --> ......TGGCTTCAGCTACTTTCTCTGTCCCCAAACCATCTCTTCAGGGT
EV526517       --> ..................................................

               101    -    151
UN09975        --> TTCACTGACTTCTCAGGATTGAGAAGCTCCTCTGCTTCACTTCCCTTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ..................................................
EV572972       <-- ..................................................
FD983905       <-- ..................................................
EV530972       <-- ..................................................
EV524807       --> TTCACTGAATTCTCAGGATTGAGAAGCTCCTCTGCTTCACTTCCTTTCGG
EY898680       --> TTCACTGAATTCTCAGGATTGAGAAGCTCCTCTGCTTCACTTCCTTTCGG
FD987949       --> TTCACTGACTTCTCAGGATTGAGAAGCTCCTCTGCTTCACTTCCCTTCGG
FY436665       --> TTCACTGACTTCTCAGGATTGAGAAGCTCCTCTGCTTCACTTCCCTTCGG
FY436775       --> TTCACTGACTTCTCAGGATTGAGAAGCTCCTCTGCTTCACTTCCCTTCGG
FY435917       --> TTCACTGACTTCTCAGGATTGAGAAGCTCCTCTGCTTCACTTCCCTTCGG
FY434605       --> TTCACTGACTTCTCAGGATTGAGAAGCTCCTCTGCTTCACTTCCCTTCGG
EV526517       --> ..................................................

               151    -    201
UN09975        --> CAAGAAACTTTCTTCCGATGAGTTTGTTTCCGCTGTCTCTTTCCAGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ..................................................
EV572972       <-- ..................................................
FD983905       <-- ..................................................
EV530972       <-- ..................................................
EV524807       --> CAAGAAACTTTCTTCCGATGAGTTTGTTTCCGCTGCCTCTTTCCAGACTT
EY898680       --> CAAGAAACTTTCTTCCGATGAGTTTGTTTCCGCTGCCTCTTTCCAGACTT
FD987949       --> CAAGAAACTTTCTTCCGATGAGTTTGTTTCCGCTGTCTCTTTCCAGACTT
FY436665       --> CAAGAAACTTTCTTCCGATGAGTTTGTTTCCGCTGTCTCTTTCCAGACTT
FY436775       --> CAAGAAACTTTCTTCCGATGAGTTTGTTTCCGCTGTCTCTTTCCAGACTT
FY435917       --> CAAGAAACTTTCTTCCGATGAGTTTGTTTCCGCTGTCTCTTTCCAGACTT
FY434605       --> CAAGAAACTTTCTTCCGATGAGTTTGTTTCCGCTGTCTCTTTCCAGACTT
EV526517       --> ..................................................

               201    -    251
UN09975        --> CTGCAATGGGAAGCAGTGGTGGATACAGGAAAGGTGTCACCGAGGCTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ..................................................
EV572972       <-- ..................................................
FD983905       <-- ..................................................
EV530972       <-- ..................................................
EV524807       --> CTGCAATGGGAAGCAGCGGTGGATACAGGAAAGTTGTCACCGAGGCTAAA
EY898680       --> CTGCAATGGGAAGCAGCGGTGGATACAGGAAAGTTGTCACCGAGGCTAAA
FD987949       --> CTGCAATGGGAAGCAGTGGTGGATACAGGAAAGGTGTCACCGAGGCTAAA
FY436665       --> CTGCAATGGGAAGCAGTGGTGGATACAGGAAAGGTGTCACCGAGGCTAAA
FY436775       --> CTGCAATGGGAAGCAGTGGTGGATACAGGAAAGGTGTCACCGAGGCTAAA
FY435917       --> CTGCAATGGGAAGCAGTGGTGGATACAGGAAAGGTGTCACCGAGGCTAAA
FY434605       --> CTGCAATGGGAAGCAGTGGTGGATACAGGAAAGGTGTCACCGAGGCTAAA
EV526517       --> ..................................................

               251    -    301
UN09975        --> CTTAAGGTGGCCATCAACGGATTCGGTAGGATAGGGAGGAACTTCTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ..................................................
EV572972       <-- ..................................................
FD983905       <-- ..................................................
EV530972       <-- ..................................................
EV524807       --> CTTAAAGTAGCCATCAATGGATTCGGTAGGATAGGGAGGAACTTCTTGAG
EY898680       --> CTTAAAGTAGCCATCAATGGATTCGGTAGGATAGGGAGGAACTTCTTGAG
FD987949       --> CTTAAGGTGGCCATCAACGGATTCGGTAGGATAGGGAGGAACTTCTTGAG
FY436665       --> CTTAAGGTGGCCATCAACGGATTCGGTAGGATAGGGAGGAACTTCTTGAG
FY436775       --> CTTAAGGTGGCCATCAACGGATTCGGTAGGATAGGGAGGAACTTCTTGAG
FY435917       --> CTTAAGGTGGCCATCAACGGATTCGGTAGGATAGGGAGGAACTTCTTGAG
FY434605       --> CTTAAGGTGGCCATCAACGGATTCGGTAGGATAGGGAGGAACTTCTTGAG
EV526517       --> ..................................................

               301    -    351
UN09975        --> ATGCTGGCATGGCCGTAAGGACTCTCCTTTTGATGTCATTGCCATTAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ..................................................
EV572972       <-- ..................................................
FD983905       <-- ..................................................
EV530972       <-- ..................................................
EV524807       --> ATGCTGGCATGGCCGTAAGGACTCTCCTTTTGATGTCATTGCCATTAACG
EY898680       --> ATGCTGGCATGGCCGTAAGGACTCTCCTTTTGATGTCATTGCCATTAACG
FD987949       --> ATGCTGGCATGGCCGTAAGGACTCTCCTTTTGATGTCATTGCCATTAACG
FY436665       --> ATGCTGGCATGGCCGTAAGGACTCTCCTTTTGATGTCATTGCCATTAACG
FY436775       --> ATGCTGGCATGGCCGTAAGGACTCTCCTTTTGATGTCATTGCCATTAACG
FY435917       --> ATGCTGGCATGGCCGTAAGGACTCTCCTTTTGATGTCATTGCCATTAACG
FY434605       --> ATGCTGGCATGGCCGTAAGGACTCTCCTTTTGATGTCATTGCCATTAACG
EV526517       --> ..................................................

               351    -    401
UN09975        --> ACACCGGCGGTGTCAAGCAGGCTTCTCATCTCCTTAAGTACGACTCAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ..................................................
EV572972       <-- ..................................................
FD983905       <-- ..................................................
EV530972       <-- ..................................................
EV524807       --> ACACTGGTGGTGTCAAGCAGGCTTCACATCTCCTTAAATACGACTCAACT
EY898680       --> ACACTGGTGGTGTCAAGCAGGCTTCACATCTCCTTAAATACGACTCAACT
FD987949       --> ACACCGGCGGTGTCAAGCAGGCTTCTCATCTCCTTAAGTACGACTCAACT
FY436665       --> ACACCGGCGGTGTCAAGCAGGCTTCTCATCTCCTTAAGTACGACTCAACT
FY436775       --> ACACCGGCGGTGTCAAGCAGGCTTCTCATCTCCTTAAGTACGACTCAACT
FY435917       --> ACACCGGCGGTGTCAAGCAGGCTTCTCATCTCCTTAAGTACGACTCAACT
FY434605       --> ACACCGGCGGTGTCAAGCAGGCTTCTCATCTCCTTAAGTACGACTCAACT
EV526517       --> ..................................................

               401    -    451
UN09975        --> CTCGGAATCTTCGACGCTGACGTGAAACCTTCCGGAGACGCTGCCCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ..................................................
EV572972       <-- ..................................................
FD983905       <-- ..................................................
EV530972       <-- ..................................................
EV524807       --> CTCGGAATCTTCGACGCTGACGTGAAACCTTCCGGAGATGCTGCCCTCTC
EY898680       --> CTCGGAATCTTCGACGCTGACGTGAAACCTTCCGGAGATGCTGCCCTCTC
FD987949       --> CTCGGAATCTTCGACGCTGACGTGAAACCTTCCGGAGACGCTGCCCTCTC
FY436665       --> CTCGGAATCTTCGACGCTGACGTGAAACCTTCCGGAGACGCTGCCCTCTC
FY436775       --> CTCGGAATCTTCGACGCTGACGTGAAACCTTCCGGAGACGCTGCCCTCTC
FY435917       --> CTCGGAATCTTCGACGCTGACGTGAAACCTTCCGGAGACGCTGCCCTCTC
FY434605       --> CTCGGAATCTTCGACGCTGACGTGAAACCTTCCGGAGACGCTGCCCTCTC
EV526517       --> ..................................................

               451    -    501
UN09975        --> TGTAGATGGAAAGATCATCAAGGTTGTGTCTAACCGCAACCCGTCTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- .............................................TCTTC
EV572972       <-- .............................................TCTTC
FD983905       <-- ..................................................
EV530972       <-- ..................................................
EV524807       --> TGTAGATGGAAAGATCATCAAGGTTGTGTCTAACCGCAACCCGTCTCTTC
EY898680       --> TGTAGATGGAAAGATCATCAAGGTTGTGTCTAACCGCAACCCGTCTCTTC
FD987949       --> TGTAGATGGAAAGATCATCAAGGTTGTGTCTAACCGCAACCCGTCTCTTC
FY436665       --> TGTAGATGGAAAGATCATCAAGGTTGTGTCTAACCGCAACCCGTCTCTTC
FY436775       --> TGTAGATGGAAAGATCATCAAGGTTGTGTCTAACCGCAACCCGTCTCTTC
FY435917       --> TGTAGATGGAAAGATCATCAAGGTTGTGTCTAACCGCAACCCGTCTCTTC
FY434605       --> TGTAGATGGAAAGATCATCAAGGTTGTGTCTAACCGCAACCCGTCTCTTC
EV526517       --> ..................................................

               501    -    551
UN09975        --> TCCCCTGGAAGGAGTTAGGAATCGACATTGTCATTGAAGGAACGGGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- TCCCCTGGAAGGAGTTAGGAATCGACATTGTCATTGAAGGAACGGGAGTG
EV572972       <-- TCCCCTGGAAGGAGTTAGGAATCGACATTGTCATTGAAGGAACAGGAGTG
FD983905       <-- ........AAGGAGTTAGGAATCGACATTGTCATTGAAGGAACGGGAGTG
EV530972       <-- ..................................................
EV524807       --> TCCCCTGGAAGGAGTTAGGAATCGACATTGTCATTGAAGGAACGGGAGTG
EY898680       --> TCCCCTGGAAGGAGTTAGGAATCGACATTGTCATTGAAGGAACGGGAGTG
FD987949       --> TCCCCTGGAAGGAGTTAGGAATCGACATTGTCATTGAAGGAACGGGAGTG
FY436665       --> TCCCCTGGAAGGAGTTAGGAATCGACATTGTCATTGAAGGAACGGGAGTG
FY436775       --> TCCCCTGGAAGGAGTTAGGAATCGACATTGTCATTGAAGGAACGGGAGTG
FY435917       --> TCCCCTGGAAGGAGTTAGGAATCGACATTGTCATTGAAGGAACGGGAGTG
FY434605       --> TCCCCTGGAAGGAGTTAGGAATCGACATTGTCATTGAAGGAACGGGAGTG
EV526517       --> ..................................................

               551    -    601
UN09975        --> TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCTAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCCAAGAA  Raphanus raphanistrum subsp. maritimus
EV572972       <-- TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCTAAGAA  Raphanus raphanistrum subsp. landra
FD983905       <-- TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCCAAGAA  Raphanus raphanistrum subsp. landra
EV530972       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV524807       --> TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCCAAGAA  Raphanus raphanistrum subsp. maritimus
EY898680       --> TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCCAAGAA  Raphanus raphanistrum subsp. maritimus
FD987949       --> TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCCAAGAA  Raphanus raphanistrum subsp. landra
FY436665       --> TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCTAAGAA  Raphanus sativus cv GSK3-1
FY436775       --> TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCTAAGAA  Raphanus sativus cv GSK3-1
FY435917       --> TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCTAAGAA  Raphanus sativus cv GSK3-1
FY434605       --> TTTGTGGACAGAGAAGGTGCAGGGAAACACATTGAAGCTGGAGCTAAGAA  Raphanus sativus cv GSK3-1
EV526517       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN09975        --> GGTTATCATTACTGCTCCAGGCAAAGGAGACATCCCAACTTACGTTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- GGTTATCATTACAGCTCCAGGCAAAGGAGACATCCCAACTTACGTTGTTG  Raphanus raphanistrum subsp. maritimus
EV572972       <-- GGTTATCATTACTGCTCCAGGCAAAGGAGACATCCCAACTTACGTTGTTG  Raphanus raphanistrum subsp. landra
FD983905       <-- GGTTATCATTACAGCTCCAGGCAAAGGAGACATCCCAACTTACGTTGTTG  Raphanus raphanistrum subsp. landra
EV530972       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV524807       --> GGTTATCATTACAGCTCCAGGCAAAGGAGACATCCCAACTTACGTTGTTG  Raphanus raphanistrum subsp. maritimus
EY898680       --> GGTTATCATTACAGCTCCAGGCAAAGGAGACATCCCAACTTACGTTGTTG  Raphanus raphanistrum subsp. maritimus
FD987949       --> GGTTATCATTACAGCTCCAGGCAAAGGAGACATCCCAACTTACGTTGTTG  Raphanus raphanistrum subsp. landra
FY436665       --> GGTTATCATTACTGCTCCAGGCAAAGGGGACATCCCAACTTACGTTGTTG  Raphanus sativus cv GSK3-1
FY436775       --> GGTTATCATTACTGCTCCAGGCAAAGGGGACATCCCAACTTACGTTGTTG  Raphanus sativus cv GSK3-1
FY435917       --> GGTTATCATTACTGCTCCAGGCAAAGGGGACATCCCAACTTACGTTGTTG  Raphanus sativus cv GSK3-1
FY434605       --> GGTTATCATTACTGCTCCAGGCAAAGGGGACATCCCAACTTACGTTGTTG  Raphanus sativus cv GSK3-1
EV526517       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN09975        --> GTGTCAATGCTGATGCTTACAACCCCGACGAGCCGATCATCAGCAATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- GTGTCAATGCTGATGCTTACAACCCCGACGAGCCGATCATCAGCAATGCA  Raphanus raphanistrum subsp. maritimus
EV572972       <-- GTGTCAATGCCGATGCTTACAACCCCGACGAGCCGATCATCAGCAATGCA  Raphanus raphanistrum subsp. landra
FD983905       <-- GTGTCAATGCTGATGCTTACAACCCCGACGAGCCGATCATCAGCAATGCA  Raphanus raphanistrum subsp. landra
EV530972       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV524807       --> GTGTCAATGCTGATGCTTACAACCCCGACGAGCCGATCATCAGCAATGCA  Raphanus raphanistrum subsp. maritimus
EY898680       --> GTGTCAATGCTGATGCTTACAACCCCGACGAGCCGATCATCAGCAATGCA  Raphanus raphanistrum subsp. maritimus
FD987949       --> GTGTCAATGCTGATGCTTACAACCCCGACGAGCCGATCATCAGCAATGCA  Raphanus raphanistrum subsp. landra
FY436665       --> GTGTCAATGCTGATGCTTACAACCCCGACGAACCGATCATCAGCAATGCA  Raphanus sativus cv GSK3-1
FY436775       --> GTGTCAATGCTGATGCTTACAACCCCGACGAACCGATCATCAGCAATGCA  Raphanus sativus cv GSK3-1
FY435917       --> GTGTCAATGCTGATGCTTACAACCCCGACGAACCGATCATCAGCAATGCA  Raphanus sativus cv GSK3-1
FY434605       --> GTGTCAATGCTGATGCTTACAACCCCGACGAACCGATCATCAGCAATGCA  Raphanus sativus cv GSK3-1
EV526517       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN09975        --> TCTTGCACTACTAACTGTCTTGCTCCCTTCGTCAAAGTTCTTGACCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- TCTTGCACTACTAACTGTCTTGCTCCCTTCGTCAAAGTTCTTGACCAGAA  Raphanus raphanistrum subsp. maritimus
EV572972       <-- TCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTAGACCAGAA  Raphanus raphanistrum subsp. landra
FD983905       <-- TCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTAGACCAGAA  Raphanus raphanistrum subsp. landra
EV530972       <-- .....................GCTCCCTTCGTCAAAGTTCTTGACCAGAA  Raphanus raphanistrum subsp. maritimus
EV524807       --> TCTTGCACTACTAACTGTCTTGCTCCCTTCGTCAAAGTTCTTGACCAGAA  Raphanus raphanistrum subsp. maritimus
EY898680       --> TCTTGCACTACTAACTGTCTTGCTCCCTTCGTCAAAGTTCTTGAC.....  Raphanus raphanistrum subsp. maritimus
FD987949       --> TCTTGCACTACTAACTGTCTTGCTCC-TTTGTCAAgtctaga........  Raphanus raphanistrum subsp. landra
FY436665       --> TCTTGCACTACTAACTGTCTTG............................  Raphanus sativus cv GSK3-1
FY436775       --> TCTTGCACTACTAACTGT................................  Raphanus sativus cv GSK3-1
FY435917       --> TCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTAGACCAAAA  Raphanus sativus cv GSK3-1
FY434605       --> TCTTGCACTACTAACTGTCTTGCTCCCTTTGTCAAAGTTCTAGACCAAAA  Raphanus sativus cv GSK3-1
EV526517       --> .....................GCTCCCTTCGTCAAAGTTCTTGACCAGAA  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN09975        --> GTTTGGTATCATAAAGGGTACAATGACAACTACTCACTCCTACACCGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- GTTTGGTATCATAAAGGGTACAATGACAACTACTCACTCCTACACCGGTG
EV572972       <-- GTTTGGTATCATAAAGGGTACAATGACAACCACTCACTCCTACACCGGTG
FD983905       <-- GTTTGGTATCATAAAGGGTACAATGACAACTACTCACTCCTACACCGGTG
EV530972       <-- GTTTGGTATCATAAAGGGTACAATGACAACTACTCACTCCTACACCGGTG
EV524807       --> GTTTGGTATCATAAAGGGTACAATGACAACTACTCACTCCTACACCGGTG
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> GTTTGGTATCATAAAGGGTACAATGACAACTACTCACTCCTACACCGGTG
FY434605       --> GTTTGGTATCATAAAGGGTACAATGACAACTACTCACTCCTACACCGGTG
EV526517       --> GTTTGGTATCATAAAGGGTACAATGACAACTACTCACTCCTACACCGGTG

               801    -    851
UN09975        --> ATCAGAGGTTACTAGACGCTAGCCACCGTGACCTAAGGAGAGCAAGAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ATCAGAGGTTACTAGACGCTAGCCACCGTGACCTAAGGAGAGCAAGAGCA  Raphanus raphanistrum subsp. maritimus
EV572972       <-- ACCAGAGGTTACTAGACGCTAGCCACCGTGACCTAAGGAGAGCAAGAGCA  Raphanus raphanistrum subsp. landra
FD983905       <-- ACCAGAGGTTACTAGACGCTAGCCACCGTGACCTAAGGAGGGCAAGAGCA  Raphanus raphanistrum subsp. landra
EV530972       <-- ATCAGAGGTTACTAGACGCTAGCCACCGTGACCTAAGGAGAGCAAGAGCA  Raphanus raphanistrum subsp. maritimus
EV524807       --> ATCAGAGGTTACTAGACGCTAGCCACCGTGACCTAAG-AGAGCAAGAGCA  Raphanus raphanistrum subsp. maritimus
EY898680       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD987949       --> ..................................................  Raphanus raphanistrum subsp. landra
FY436665       --> ..................................................  Raphanus sativus cv GSK3-1
FY436775       --> ..................................................  Raphanus sativus cv GSK3-1
FY435917       --> ACCAGAGGTTACTAGACGCTAGCCACCGTGATCTAAGGAGAGCAAGAGCA  Raphanus sativus cv GSK3-1
FY434605       --> ACCAGAGGTTACTAGACGCTAGCCACCGTGATCTAAGGAGAGCAAGAGCA  Raphanus sativus cv GSK3-1
EV526517       --> ATCAGAGGTTACTAGACGCTAGCCACCGTGACCTAAGGAGAGCAAGAGCA  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN09975        --> GCTGCTTTAAACATTGTTCCCACATCCACAGGAGCAGCTAAAGCAGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- GCTGCTTTAAACATTGTTCCCACATCCACAGGAGCAGCTAAAGCAGTGGC
EV572972       <-- GCTGCTTTAAACATTGTTCCCACATCCACGGGAGCAGCTAAAGCAGTGGC
FD983905       <-- GCTGCTTTAAACATTGTTCCCACATCCACAGGAGCAGCTAAAGCAGTGGC
EV530972       <-- GCTGCTTTAAACATTGTTCCCACATCCACAGGAGCAGCTAAAGCAGTGGC
EV524807       --> GCTGCTTTAA........................................
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> GCTGCTTTAAACATTGTTCCCACATCCACAGAAGCAGCTAAAGCAGTGGC
FY434605       --> GCTGCTTTAAACATTGTTCCCACATCCACAGGAGCAGCTAAAGCAGTGGC
EV526517       --> GCTGCTTTAAACATTGTTCCCACATCCACAGGAGCAGCTAAAGCAGTGGC

               901    -    951
UN09975        --> TCTCGTGCTCCCTAACCTCAAAGGAAAACTCAACGGAATCGCTCTCCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- TCTCGTGCTCCCTAACCTCAAAGGAAAACTCAACGGAATCGCTCTCCGTG
EV572972       <-- TCTCGTGCTCCCTAACCTCAAAGGAAAACTCAACGGAATCGCTCTCCGTG
FD983905       <-- TCTCGTTCTCCCTAACCTCAAAGGAAAACTCAACGGGATCGCTCTCCGTG
EV530972       <-- TCTCGTGCTCCCTAACCTCAAAGGAAAACTCAACGGAATCGCTCTCCGTG
EV524807       --> ..................................................
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> TCTCGTGCTCCCTAACCT................................
FY434605       --> TCTCGTGCTCCCTAACCTCAAAAGGAAACTCAACGGgat...........
EV526517       --> TCTCGTGCTCCCTAACCTCAAAGGAAAACTCAACGGAATCGCTCTCCGTG

               951    -   1001
UN09975        --> TACCGACACCGAACGTGTCAGTGGTTGATCTCGTTGTGCAGGTGACCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- TACCGACACCGAACGTGTCAGTGGTTGATCTCGTTGTGCAGGTGACTAAG
EV572972       <-- TACCTACACCGAACGTGTCAGTGGTTGATCTTGTTGTGCAGGTCACCAAG
FD983905       <-- TACCTACACCGAACGTGTCAGTGGTTGATCTCGTTGTGCAGGTGACCAAG
EV530972       <-- TACCGACACCGAACGTGTCAGTGGTTGATCTCGTTGTGCAGGTGACCAAG
EV524807       --> ..................................................
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> ..................................................
FY434605       --> ..................................................
EV526517       --> TACCGACACCGAACGTGTCAGTGGTTGATCTCGTTGTGCAGGTGACCAAG

               1001   -   1051
UN09975        --> AAGACTTTCGCTGAGGAAGTTAACGCTGCTTTCAGAGACTCCGCAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- AAGACTTTCGCTGAGGAAGTTAACGCTGCTTTCAGAGACTCCGCAGAGAA
EV572972       <-- AAGACTTTCGCTGAGGAAGTTAACGCTGCTTTTAGAGACTCCGCAGAGAA
FD983905       <-- AAGACTTTCGCTGAGGAAGTTAACGCTGCTTTCAGAGAATCTGCAGAGAA
EV530972       <-- AAGACTTTCGCTGAGGAAGTTAACGCTGCTTTCAGAGACTCCGCAGAGAA
EV524807       --> ..................................................
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> ..................................................
FY434605       --> ..................................................
EV526517       --> AAGACTTTCGCTGAGGAAGTTAACGCTGCTTTCAGAGACTCCGCAGAGAA

               1051   -   1101
UN09975        --> AGAGCTTAAAGGTATACTCGAAGTCTGTGATGAGCCGCTTGTGTCAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- AGAGCTTAAAGGTATACTCGAAGTCTGTGATGAGCCGCTTGTGTCAGTTG
EV572972       <-- AGAGCTTAAAGGTATACTAGAAGTCTGTGATGAGCCGCTTGTGTCAGTTG
FD983905       <-- AGAGCTTAAAGGTATCCTAGAAGTCTGTGATGAGCCGCTCGTGTCAGTTG
EV530972       <-- AGAGCTTAAAGGTATACTCGAAGTCTGTGATGAGCCGCTTGTGTCAGTTG
EV524807       --> ..................................................
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> ..................................................
FY434605       --> ..................................................
EV526517       --> AGAGCTTAAAGGTATACTCGAAGTCTGTGATGAGCCGCTTGTGTCAGTTG

               1101   -   1151
UN09975        --> ATTTCAGATGCTCAGATGTGTCGTCCACCATTGATTCTTCACTCACTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- ATTTCAGATGCTCAGATGTGTCGTCCACCGTTGATTCTTCACTCACTATG
EV572972       <-- ATTTCAGATGCTCAGATGTGTCGTCAACCATTGATTCTTCACTCACTATG
FD983905       <-- ATTTCAGATGCTCGGATGTGTCGTCCACCATTGATTCTTCACTCACTATG
EV530972       <-- ATTTCAGATGCTCAGATGTGTCGTCCACCATTGATTCTTCACTCACTATG
EV524807       --> ..................................................
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> ..................................................
FY434605       --> ..................................................
EV526517       --> ATTTCAGATGCTCAGATGTGTCGTCCACCATTGATTCTTCACTCACTATG

               1151   -   1201
UN09975        --> GTGATGGGAGATGATATGGTTAAGGTGATTGCTTGGTATGATAATGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- GTGATGGGAGATGATATGGTTAAGGTGATTGCTTGGTATGATAATGAATG
EV572972       <-- GTGATGGGAGATGATATGATTAAGGTGATTGCTTGGTATGATAATGAATG
FD983905       <-- GTGATGGGAGATGATATGGTTAAGGTGATTGCTTGGTATGATAATGAATG
EV530972       <-- GTGATGGGAGATGATATGGTTAAGGTGATTGCTTGGTATGATAATGAATG
EV524807       --> ..................................................
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> ..................................................
FY434605       --> ..................................................
EV526517       --> GTGATGGGAGATGATATGGTTAAGGTGATTGCTTGGTATGATAATGAATG

               1201   -   1251
UN09975        --> GGGTTACTCACAGAGAGTTGTTGATTTGGCTGACATTGTTGCCAACAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- GGGTTACTCACAGAGAGTTGTTGATTTGGCTGACATTGTTGCCAACAACT
EV572972       <-- GGGTTACTCACAGAGAGTTGTTGATTTGGCTGACATTGTTGCCAACAACT
FD983905       <-- GGGTTACTCTCAGAGAGTTGTTGATTTGGCTGACATTGTTGCCAACAACT
EV530972       <-- GGGTTACTCACAGAGAGTTGTTGATTTGGCTGACATTGTTGCCAACAACT
EV524807       --> ..................................................
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> ..................................................
FY434605       --> ..................................................
EV526517       --> GGGTTACTCACAGAGAGTTGTTGATTTGGCTGACATTGTTGCCAACAACT

               1251   -   1301
UN09975        --> GGAAGTGATTTGTATCTACTTTTCAAATCAAAACTCTTTATAATTAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- GGAAGTGATTTGTATCTACTTTTCAAATCAAAACTCTTTATAATTAACAG
EV572972       <-- GGAAGTGATTTGTATC-ACTTTTGAAATCAAAACTCTTTAT.........
FD983905       <-- GGAAGTGATTTGTATCTACTTTTCAAATCAAAACTCTTTAT.........
EV530972       <-- GGAAGTGATTTGTATCTACTTTTCAAATCAAAACTCTTTATAATTAACAG
EV524807       --> ..................................................
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> ..................................................
FY434605       --> ..................................................
EV526517       --> GGAAGTGATTTGTATCTACTTTTCAAATCAAAACTCTTTATAATTAACAG

               1301   -   1351
UN09975        --> GTCTCAAAAACAACAAATAATGATAATAATATACAGAGATGTAATGTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529713       <-- GTCTCAAAAACAACAAATAATGATAATAATATACAGAGATGTAATGTTAg
EV572972       <-- ..................................................
FD983905       <-- ..................................................
EV530972       <-- GTCTCAAAAACAACAAATAATGATAATAATATACAGAGATGTAATGTTAT
EV524807       --> ..................................................
EY898680       --> ..................................................
FD987949       --> ..................................................
FY436665       --> ..................................................
FY436775       --> ..................................................
FY435917       --> ..................................................
FY434605       --> ..................................................
EV526517       --> GTCTCAAAAACAACAAATAATGATAATAATATACAGAGATGTAATGTTAT

               1351   -   1401
UN09975        --> AC
                   ~~
EV529713       <-- ..
EV572972       <-- ..
FD983905       <-- ..
EV530972       <-- AC
EV524807       --> ..
EY898680       --> ..
FD987949       --> ..
FY436665       --> ..
FY436775       --> ..
FY435917       --> ..
FY434605       --> ..
EV526517       --> AC