1      -     51
UN10137        --> GGATCACAGCTCCGTCCCTTTATCTATCCAGCCATCCACCCACCCACCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- ..................................................
FD985211       <-- ..................................................
EV542809       <-- ..................................................
EX759108       <-- ..................................................
EV538896       --> GGATCACAGCTCCGTCCCTTTATCTATCCAGCCATCCACCCACCCACCCA
FD989374       --> ..................................................
FD989431       --> ..................................................
EX754889       --> ..................................................

               51     -    101
UN10137        --> ATAATCTCGTCGTCTTCCGTTGATCATCTTCTTCCCATCAATCAATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- ..................................................
FD985211       <-- ..................................................
EV542809       <-- ..................................................
EX759108       <-- ..................................................
EV538896       --> ATAATCTCGTCGTCTTCCGTTGATCATCTTCTTCCCATCAATCAATCAAA
FD989374       --> ..................................................
FD989431       --> ..................................................
EX754889       --> ..................................................

               101    -    151
UN10137        --> GAGAGTCTCTCGAGGATTCAGAATCTCTCTCCTTCCGTCAAATTCAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- .................TCAGAATCTCTCTCCTTCCGTCAAATTCAAATT
FD985211       <-- .................TCAGAATCTCTCTCCTTCCGTCAAATTCAAATT
EV542809       <-- ..................................................
EX759108       <-- ..................................................
EV538896       --> GAGAGTCTCTCGAGGATTCAGAATCTCTCTCCTTCCGTCAAATTCAAATT
FD989374       --> .................TCAGAATCTCTCTCCTTCCGTCAAATTCAAATT
FD989431       --> .................TCAGAATCTCTCTCCTTCCGTCAAATTCAAATT
EX754889       --> ..................................................

               151    -    201
UN10137        --> CTCTCTCT--TTATATAATAGATTCCGAGAAGGATTTTTCTGATGGTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- CTCTCTCT--TTATATAATAGATTCCGAGAAGGATTTTTCTGATGGTAGA
FD985211       <-- CTCTCTCT--TTATATAATAGATTCCGAGAAGGATTTTTCTGATGGTAGA
EV542809       <-- ..................................................
EX759108       <-- ..................................................
EV538896       --> CTCTCTCTATTTATATAATAGATTCCGAGAAGGAGTTTTCTGATGGTAGA
FD989374       --> CTCTCTCT--TTATATAATAGATTCCGAGAAGGATTTTTCTGATGGTAGA
FD989431       --> CTCTCTCT--TTATATAATAGATTCCGAGAAGGATTTTTCTGATGGTAGA
EX754889       --> ..................................................

               201    -    251
UN10137        --> GAGCTACAGTAACCTATCGTGGCTGGTATGGATCCAAATGTTCGTCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- GAGCTACAGTAACCTATCGTGGCTGGTATGGATCCAAATGTTCGTCTTCT
FD985211       <-- GAGCTACAGTAACCTATCGTGGCTGGTATGGATCCAAATGTTCGTCTTCT
EV542809       <-- ..................................................
EX759108       <-- ..................................................
EV538896       --> GAGCTACAGTAACCTCTCGTGGCTGGTATGGATCCAAATGTTCGTCTTCT
FD989374       --> GAGCTACAGTAACCTATCGTGGCTGGTATGGATCCAAATGTTCGTCTTCT
FD989431       --> GAGCTACAGTAACCTATCGTGGCTGGTATGGATCCAAATGTTCGTCTTCT
EX754889       --> ..................................................

               251    -    301
UN10137        --> TCCTCCTCCTACTCCTCTTCTGCGTCTTCGGATTACTATCCTCCTCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- TCCTCCTCCTACTCCTCTTCTGCGTCTTCGGATTACTATCCTCCTCAGAT
FD985211       <-- TCCTCCTCCTACTCCTCTTCTGCGTCTTCGGATTACTATCCTCCTCAGAT
EV542809       <-- ........................TCTTCGGATTATTATCCTCCTCAGAT
EX759108       <-- ..................................................
EV538896       --> TCCTCCTCCTACTCCTCTTCTGCGTCTTCGGATTATTATCCTCCTCAGAT
FD989374       --> TCCTCCTCCTACTCCTCTTCTGCGTCTTCGGATTACTATCCTCCTCAGAT
FD989431       --> TCCTCCTCCTACTCCTCTTCTGCGTCTTCGGATTACTATCCTCCTCAGAT
EX754889       --> .................................................T

               301    -    351
UN10137        --> ATCAGCGTCTCATCCGGTGATTCACTTCCTTCTTCGTCCGCCTCTCGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- ATCAGCGTCTCATCCGGTGATTCACTTCCTTCTTCGTCCGCCTCTCGGAG  Raphanus raphanistrum subsp. landra
FD985211       <-- ATCAGCGTCTCATCCGGTGATTCACTTCCTTCTTCGTCCGCCTCTCGGAG  Raphanus raphanistrum subsp. landra
EV542809       <-- ATCAGCGTCTCATCCGCTGATTCACTTCCTTCTTCGTCCGCCTCTCGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759108       <-- ...............................................GAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538896       --> ATCAGCGTCTCATCCGCTGATTCACTTCCTTCTTCGTCCGCCTCTCGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989374       --> ATCAGCGTCTCATCCGGTGATTCACTTCCTTCTTCGTCCGCCTCTCGGAG  Raphanus raphanistrum subsp. landra
FD989431       --> ATCAGCGTCTCATCCGGTGATTCACTTCCTTCTTCGTCCGCCTCTCGGAG  Raphanus raphanistrum subsp. landra
EX754889       --> ATCAGCGTCTCATCCGCTGATTCACTTCCTTCTTCGTCCGCCTCTCGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN10137        --> GTTTCTATCTGGAGATCCGATTCCGATCAGCCGCCACCATGGCTTGGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- GTTTCTATCTGGAGATCCGATTCCGATCAGCCGCCACCACGGCTTGGGGT  Raphanus raphanistrum subsp. landra
FD985211       <-- GTTTCTATCTGGAGATCCGATTCCGATCAGCCGCCACCACGGCTTGGGGT  Raphanus raphanistrum subsp. landra
EV542809       <-- GTTTCTATCTGGAGATCCGATTCCGATCAGCCGCCACCATGGCTTGGGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759108       <-- GTTTCTATCAGGAGATCCGATTCCGATCAGCCGCCACCATGGCTTGGGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538896       --> GTTTCTATCTGGAGATCCGATTCCGATCAGCCGCCACCATGGCTTGGGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989374       --> GTTTCTATCTGGAGATCCGATTCCGATCAGCCGCCACCACGGCTTGGGGT  Raphanus raphanistrum subsp. landra
FD989431       --> GTTTCTATCTGGAGATCCGATTCCGATCAGCCGCCACCACGGCTTGGGGT  Raphanus raphanistrum subsp. landra
EX754889       --> GTTTCTATCATGAGATCCGATTCCGATCAGCCGCCACCATGGCTTGGGGT  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN10137        --> TCTCCGTAGTTCAGTCTAATCAGATGGGAAGTTCTCAGGCCATAAAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- TCTCCGTAGTTCAGTCTAATCAGATGGGAAGTTCTCAGGCCATAAAAGGA  Raphanus raphanistrum subsp. landra
FD985211       <-- TCTCCGTAGTTCAGTCTAATCAGATGGGAAGTTCTCAGGCCATAAAAGGA  Raphanus raphanistrum subsp. landra
EV542809       <-- TCTCCGTAGTACAGTCTAATCAGATGGGAAGTTCTCAGGCCATAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759108       <-- TCTCCGTAGTACAGTCTAATCAGATGGGAAGTTCTCAGGCCATAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538896       --> TCTCCGTAGTACAGTCTAATCAGATGGGAAGTTCTCAGGCCATAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989374       --> TCTCCGTAGTTCAGTCTAATCAGATGGGAAGTTCTCAGGCCATAAAAGGA  Raphanus raphanistrum subsp. landra
FD989431       --> TCTCCGTAGTTCAGTCTAATCAGATGGGAAGTTCTCAGGCCATAAAAGGA  Raphanus raphanistrum subsp. landra
EX754889       --> TCTCCGTAGTACAGTCTAATCAGATGGGAAGTTCTCAAGCCATAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN10137        --> GAGATAGTACCAGCTGAAACAAGGAGAGTGACGAGAACAGAGGAAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- GAGATAGTACCAGCTGAAACAAGGAGAGTGACGAGAACAGAGGAAGAAGA  Raphanus raphanistrum subsp. landra
FD985211       <-- GAGATAGTACCAGCTGAAACAAGGAGAGTGACGAGAACAGAGGAAGAAGA  Raphanus raphanistrum subsp. landra
EV542809       <-- GAGATAGCACCAGCTGAAACAAGGAGAGTGACGAGAACAGAGGAAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759108       <-- GAGATAGCACCAGCTGAAACAAGGAGAGTGACGAGAACAGAGGAAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538896       --> GAGATAGCACCAGCTGAAACAAGGAGAGTGACGAGAACAGAGGAAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989374       --> GAGATAGTACCAGCTGAAACAAGGAGAGTGACGAGAACAGAGGAAGAAGA  Raphanus raphanistrum subsp. landra
FD989431       --> GAGATAGTACCAGCTGAAACAAGGAGAGTGACGAGAACAGAGGAAGAAGA  Raphanus raphanistrum subsp. landra
EX754889       --> GAGATAGCACCAGCTGAAACAAGGAGAGTGACGAGAACAGAGGAAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN10137        --> AAGTTCTTCTTCTGATGAAGACTCGAGTAGTAGTAGTATTTTGTATCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- AAGTTCTTCTTCTGATGAAGACTCGAGTAGTAG---TATTTTGTATCATC  Raphanus raphanistrum subsp. landra
FD985211       <-- AAGTTCTTCTTCTGATGAAGACTCGAGTAGTAG---TATTTTGTATCATC  Raphanus raphanistrum subsp. landra
EV542809       <-- AAGTTCTTCTTCTGATGAAGACTCGAGTAGTAGTAGTATTTTGTATCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759108       <-- AAGTTCTTCTTCTGATGAAGACTCGAGTAGTAGTAGTATTTTGTATCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538896       --> AAGTTCTTCTTCTGATGAAGACTCGAGTAGTAGTAGTATTTTGTATCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989374       --> AAGTTCTTCTTCTGATGAAGACTCGAGTAGTAGTA---TTTTGTATCATC  Raphanus raphanistrum subsp. landra
FD989431       --> AAGTTCTTCTTCTGATGAAGACTCGAGTAGTAGTA---TTTTGTATCATC  Raphanus raphanistrum subsp. landra
EX754889       --> AAGTTCTTCTTCTGATGAAGACTCGAGTAGTAGTAGTATTTTGTATCATC  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN10137        --> CCTGCAATCTGTTTCAGCTTGCTGGAACTGCATTCCTTAAGTGTTTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- CCTGCAATCTGTTTCAGCTTGCTGGAACTGCATTCCTAAAGTGTTTTGGG  Raphanus raphanistrum subsp. landra
FD985211       <-- CCTGCAATCTGTTTCAGCTTGCTGGAACTGCATTCCTAAAGTGTTTTGGG  Raphanus raphanistrum subsp. landra
EV542809       <-- CCTGCAATCTGTTTCAGCTTGCTGGAACTGCATTCCTTAAGTGTTTTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759108       <-- CCTGCAATCTGTTTCAGCTTGCTGGAACTGCATTCCTTAAGTGTTTTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538896       --> CCTGCAATCTGTTTCAGCTTGCTGGAACTGCATTCCTTAAGTGTTTTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989374       --> CCTGCAATCTG.......................................  Raphanus raphanistrum subsp. landra
FD989431       --> CCTGCAATCTGTTTCAGCTTGCTGGAACTGCATTCCTAAAGTGTTTTGGG  Raphanus raphanistrum subsp. landra
EX754889       --> CCTGCAATCTGTTTCAGCTTGCTGGAACTGCATTCCTTAAGTGTTTTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN10137        --> CTTGACCGGAGTACAGAAGAAACTGATGATTCTCCGAGACCAGAATCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- CTTGACCGGAGTACAGTAGAAACTGATGATTCTCCGAGACCAGAATCTAA  Raphanus raphanistrum subsp. landra
FD985211       <-- CTTGACCGGAGTACAGTAGAAACTGATGATTCTCCGAGACCAGAATCTAA  Raphanus raphanistrum subsp. landra
EV542809       <-- CTTGACCGGAGTACAGAAGAAACTGATGATTCTCCGAGACCAGAATCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759108       <-- CTTGACCGGAGTACAGAAGAAACTGATGATTTTCCGAGACCAGAATCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538896       --> CTTGACCGGAGTACAGAAGAAACTGATGATTCTCCGAGACCAGAATCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989374       --> ..................................................  Raphanus raphanistrum subsp. landra
FD989431       --> CTTGACCGGAGTACAGTAGAAACTGATGATTCTCCGAGACCAGAATCTAA  Raphanus raphanistrum subsp. landra
EX754889       --> CTTGACCGGAGTACAGAAGAAACTGATGATTCTCCGAGACCAGAATCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN10137        --> GAAACAGAGGTGATCCCAAGTTCCTGTGAATATAGAAGAAGAACATACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- GAAACAGAGGTGATCCCAAGTTCTTGTGAATATAGAAGAACAACATACAC  Raphanus raphanistrum subsp. landra
FD985211       <-- GAAACAGAGGTGATCCCAAGTTCTTGTGAATATAGAAGAACAACATACAC  Raphanus raphanistrum subsp. landra
EV542809       <-- GAAACAGAGGTGATCCCAAGTTCCTGTGAATATAGAAGAAGAACATACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759108       <-- GAAACAGAGGTAATCCCAAGTTCCTGTGAATATAGAAGAAGAACATACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538896       --> GAAACAGAGGTGATCCCAAGTTCCTGTGAATATAGAAGAAGAACATACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989374       --> ..................................................  Raphanus raphanistrum subsp. landra
FD989431       --> GAAACAGAGGTGATCCCAAGTTCTTGTGAATATAGAAGAACAACATACAC  Raphanus raphanistrum subsp. landra
EX754889       --> GAAACAGAGGTAATCCCAAGTTCCTGTGAATATAGAAGA-GAACATACAC  Raphanus raphanistrum subsp. raphanistrum (MS)

               701    -    751
UN10137        --> GTTTCTAATATGAGTTCATTCGTAGTAAATTGAGTTAGGAGAGGATTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- GTTTCTAATATGAGTTCATTCGTAGTAAATTGAGTTAGGAGAGGATTAAG
FD985211       <-- GTTTCTAATATGAGTTCATTCGTAGTAAATTGAGTTAGGAGAGGATTAAG
EV542809       <-- GTTTCTAATATGAGTTCATTCGTAGTAAATTGAGTTAGGAGAGGATTAAG
EX759108       <-- GTTTTTAATATGAGTTCATTCGTGGTAAATTGAGTTAGGAGAGGATTAAG
EV538896       --> GTTTCTAATATGAGTTCATTCGTAGTAAATTGAGTTAGGAGAGGATTAAG
FD989374       --> ..................................................
FD989431       --> GTTTCTAATATGAGTTCATTCGTAGTAAATTGAGTTAGGAGAGGATTAAG
EX754889       --> GTT-CTAATATGAGTTCA................................

               751    -    801
UN10137        --> AAACTTGTAAAGTTTATACTATGGAAAGGTTATATTGTTGGGGTTAACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- AAACTTGTAAAGTTTATACTATGGAAAGGTTATATTGTTGGGGTT.....  Raphanus raphanistrum subsp. landra
FD985211       <-- AAACTTGTAAAGTTTATACTATGGAAAGGTTATATTGTTGGGGTT.....  Raphanus raphanistrum subsp. landra
EV542809       <-- AAACTTGTAAAGTATATACTATGGAAAGGTTATATTGTTGGGGTTAACGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759108       <-- AAACTTGTAAAGTATATACTATGGAAAGGTTATATTGTTGGGGTTAACGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538896       --> AAACTTGTAAAGTATATACTATGGAAAGGTTATATTGTTGGGGTTAACGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989374       --> ..................................................  Raphanus raphanistrum subsp. landra
FD989431       --> AAACTTGTAAAGTTTATACTATGGAAA.......................  Raphanus raphanistrum subsp. landra
EX754889       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               801    -    851
UN10137        --> GAACGAGTTAACTCAGTGAATAACTTCTTTTTTTTT--GTCAGCCAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- ..................................................
FD985211       <-- ..................................................
EV542809       <-- GAACGAGTTAACTCAGTGAATAACTTCTTTTTTTTT-TGTCAGCC.....
EX759108       <-- GAACGAGTTAACTCAGTGAATAACTTCTTTTTTTTT--GTCAGCCAGTGA
EV538896       --> GAACGAGTTAACTCAGTGAATAACTTCTTTTTTTTTTTGTCAGCCAaaa.
FD989374       --> ..................................................
FD989431       --> ..................................................
EX754889       --> ..................................................

               851    -    901
UN10137        --> ATAACTGTTATTAAAATATTTCAAATGCGGTTTATATGGGTGATACATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- ..................................................
FD985211       <-- ..................................................
EV542809       <-- ..................................................
EX759108       <-- ATAACTGTTATTAAAATATTTCAAATGCGGTTTATATGGGTGATACATTT
EV538896       --> ..................................................
FD989374       --> ..................................................
FD989431       --> ..................................................
EX754889       --> ..................................................

               901    -    951
UN10137        --> GAAATCTGCTGACTGCATGTCAATATATCCCCTTTGAATGTGAAGCACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- ..................................................
FD985211       <-- ..................................................
EV542809       <-- ..................................................
EX759108       <-- GAAATCTGCTGACTGCATGTCAATATATCCCCTTTGAATGTGAAGCACGC
EV538896       --> ..................................................
FD989374       --> ..................................................
FD989431       --> ..................................................
EX754889       --> ..................................................

               951    -   1001
UN10137        --> CAAATGTAGGCCAATTTTAATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~
FD985162       <-- .......................
FD985211       <-- .......................
EV542809       <-- .......................
EX759108       <-- CAAATGTAGGCCAATTTTAATGC
EV538896       --> .......................
FD989374       --> .......................
FD989431       --> .......................
EX754889       --> .......................