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Alignment for radish unigene UN10240

               1      -     51
UN10240        --> GGACAACACAACACAATCCAAATCCACAATCTTTATCCCAAAATTTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> GGACAACACAACACAATCCAAATCCACAATCTTTATCCCAAAATTTCCAC
EV566313       --> GGACAACACAACACAATCCAAATCCACAATCTTTATCCCCAAATTTCCAC
EY906420       --> .....ggACAACACAATCCAAATCCACAATCTTTATCCCAAAATTTCCAC
EV549615       --> ..................................................
FD551228       --> ..................................................
FD964486       --> ..................................................

               51     -    101
UN10240        --> CTAATGGCTCCAACACTCTCTACCGCCCGATTCGCAGACCCAGCTGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> CTAATGGCTCCAACACTCTCTACCGCCCGATTCGCAGACCCAGCTGAAGT
EV566313       --> CTAATGGCTCCAACACTCTCTACCGCCCGATTCGCAGACCCAGCTGAAGT
EY906420       --> CTAATGGCTCCAACACTCTCTACCGCCCGATTCGCAGACCCAGCTGAAGT
EV549615       --> ..................................................
FD551228       --> ..................................................
FD964486       --> ..................................................

               101    -    151
UN10240        --> AACCGAGTTCGTTGTAAACAAAGGCAACGGCGTAAAGGGTTTATCAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> AACCGAGTTCGTTGTAAACAAAGGCAACGGCGTAAAGGGTTTATCAGAAA
EV566313       --> AACCGAGTTCGTTGTAAACAAAGGCAACGGCGTAAAGGGTTTATCAGAAA
EY906420       --> AACCGAGTTCGTCGTAAACAAAGGCAACGGCGTAAAGGGTTTATCAGAAA
EV549615       --> ..................................................
FD551228       --> ..................................................
FD964486       --> ..................................................

               151    -    201
UN10240        --> CAGGAATCAAAGCTCTCCCAGACCAATACATTCAACCATTCGAAGAACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> CAGGAATCAAAGCTCTCCCAGACCAATACATTCAACCATTCGAAGAACGT
EV566313       --> CAGGAATCAAAGCTCTCCCAGACCAATACATTCAACCATTCGAAGAACGT
EY906420       --> CAGGAATCAAAGCTCTCCCAGACCAATACATTCAACCATTCGAAGAACGT
EV549615       --> ..................................................
FD551228       --> ..................................................
FD964486       --> ..................................................

               201    -    251
UN10240        --> CTCATCAACAAGTTCGTCAACGAGACAGATGAAGCCATTCCTGTCATCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> CTCATCAACAAGTTCGTCAACGAGACAGATGAAGCCATTCCTGTCATCGA
EV566313       --> CTCATCAACAAGTTCGTCAACGAGACAGATGAAGCCATTCCTGTCATCGA
EY906420       --> CTCATCAACAAGTTCGTCAACGAGACAGACGAGGCCATTCCTGTCATCGA
EV549615       --> ............................................gATCGA
FD551228       --> ..................................................
FD964486       --> ..................................................

               251    -    301
UN10240        --> CATGTCGAACCCCGACGAGAGCAAAGTCGCTGAAGCTATATGTGACGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> CATGTCGAACCCCGACGAGAGCAAAGTCGCTGAAGCTATATGTGACGCTG
EV566313       --> CATGTCGTACCCCGACGAGAGCAAAGTCGCTGAAGCTATATGTGACGCTG
EY906420       --> CATGTCGAACCCCGACGAGGGCAGAGTCGCTGAAGCTATATGTGACGCTG
EV549615       --> CATGTC-AACCCCGACGAGAGCAAAGTCGCTGAAGCTATATGTGACGCTG
FD551228       --> ..................................................
FD964486       --> ..................................................

               301    -    351
UN10240        --> CTGAGAATTGGGGTTTCTTCCAAGTGATCAACCATGGAGTTCCTTTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> CTGAGAAATGGGGTTTCTTCCAAGTGATCAACCATGGAGTTCCTTTGGAA
EV566313       --> CTGAGAAATGGGGTTTCTTCCAAGTGATCAACCATGGAGTTCCTTTGGAA
EY906420       --> CTGAGAATTGGGGTTTCTTCCAAGTGATCAACCATGGAGTTCCTTTGGAA
EV549615       --> CTGAGAATTGGGGTTTCTTCCAAGTGATCAACCATGGAGTTCCTTTGGAA
FD551228       --> ..................................................
FD964486       --> ..................................................

               351    -    401
UN10240        --> GTTCTTGACAACGTGAAGGCCGCTACTCACATGTTCTTTAATCTTCCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> GTTCTTGACAACGTGAAGGCCGCTACTCACATGTTCTTTAATCTTCCTGT
EV566313       --> GTTCTTGACAACGTGAAGGCCGCTACTCACATGTTCTTTAATCTTCCTGT
EY906420       --> GTTCTTGACAACGTGAAGGCCGCTACTCACATGTTCTTTAATCTCCCAGT
EV549615       --> GTTCTTGACAACGTGAAGGCCGCTACTCACATGTTCTTTAATCTCCCAGT
FD551228       --> ..................................................
FD964486       --> ..................................................

               401    -    451
UN10240        --> TGAGGAGAAGAGCAAATACACAAAGGAGAATTCTCTGTCTACGAATGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> TGAGGAGAAGAGCAAATACACAAAGGAGAATTCTCTGTCTACGAATGTTA
EV566313       --> TGAGGAGAAGAGCAAATACACAAAGGAGAATTCTCTGTCTACGAATGTTA
EY906420       --> TGAGGAGAAGAGCAAATACACAAAGGAGAATTCTCTGTCTACGAATGTTA
EV549615       --> TGAGGAGAAGAGCAAATACACAAAGGAGAATTCTCTGTCTACAAATGTTA
FD551228       --> ..................................................
FD964486       --> ..................................................

               451    -    501
UN10240        --> GGTTCGGTACGAGTTTTAGTCCTCGTGCAGAGAAGGCTCTGGAGTGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> GGTTCGGTACGAGTTTTAGTCCTCGTGCAGAGAAGGCTCTGGAGTGGAAA
EV566313       --> GGTTCGGTACGAGTTTTAGTCCTCGTGCAGAGAAGGCTCTGGAGTGGAAA
EY906420       --> GGTTCGGTACGAGTTTTAGTCCTCGTGCAGAGAAGGCTCTGGAGTGGAAA
EV549615       --> GGTTCGGTACGAGTTTTAGTCCTCGTGCAGAGAAGGCTCTGGAGTGGAAA
FD551228       --> ..gTCGGTACGAGTTTTAGTCCTCGTGCAGAGAAGGCTCTGGAGTGGAAA
FD964486       --> ..................................................

               501    -    551
UN10240        --> GATTATCTCAGTCTCTTCTTTGTCTCTGAAGCTGAAGCTGAACAGTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- .ATTATCTCAGTCTCTTCTTTGTCTCTGAAGCTGAAGCTGAACAGTTTTG
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> GATTATCTCAGTCTCTTCTTTGTCTCTGAAGCTGAAGCTGAACAGTTTTG
EV566313       --> GATTATCTCAGTCTCTTCTTTGTCTCTGAAGCTGAAGCTGAACAGTTTTG
EY906420       --> GATTATCTCAGTCTCTTCTTTGTCTCTGAAGCCGAAGCTGAACAGTTTTG
EV549615       --> GATTATCTCAGTCTCTTCTTTGTCTCTGAAGCTGAAGCTGAACATTTTTG
FD551228       --> GATTATCTCAGTCTCTTCTTTGTCTCTGAAGCTGAAGCTGAACAGTTTTG
FD964486       --> ...gATCTCAGTCTCTTCTTTGTCTCTGAAGCTGAAGCTGAACAGTTTTG

               551    -    601
UN10240        --> GCCTGATGTTTGCAAGAATGAAGCTCTAGAGTACATGAACAAGTCCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- GCCTGATGTTTGCAAGAATGAGGCTCTAGAGTACATGAACAAGTCCAAGA
FD547125       <-- ..................................................
EV545053       <-- ..................................................
EV528870       --> GCCTGATGTTTGCAAGAATGAAGCTCTAGAGTACATGAACAAGTCCAAGA
EV566313       --> GCCTGATGTTTGCAAGAATGAGGCTCTAGAGTACATGAACAAGTCCAAGA
EY906420       --> GCCTGATGTTTGCAAGAATGAAGCTCTAGAGTACATGAACAAGTCCAAGA
EV549615       --> GCCTGATGTTTGCAAGAATGAAGCTCTAGAGTACATGAACAAGTCCAAGA
FD551228       --> GCCTGATGTTTGCAAGAATGAAGCTCTAGAGTACATGAACAAGTCCAAGA
FD964486       --> GCCTGATGTTTGCAAGAATGAAGCTCTAGAGTACATGAACAAGTCCAAGA

               601    -    651
UN10240        --> CAATGGTGAGGAAGCTTCTAGAGTACTTAGGGAAGAACCTCAATGTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- CAATGGTGAGGAAGCTTCTAGAGTACTTAGGGAAGAACCTCAATGTGAAA
FD547125       <-- ..........................................ATGTGAAA
EV545053       <-- ..................................................
EV528870       --> CAATGGTGAGGAAGCTTCTAGAGTACTTAGGGAAGAACCTCAATGTGAAA
EV566313       --> CAATGGTGAGGAAGCTTCTAGAGTACTTAGGGAAGAACCTCAATGTGAAA
EY906420       --> CAATGGTGATGAAGCTTCTAGAGTAC........................
EV549615       --> CAATGGTGAGGAAGCTTCTAGAGTACTTAGGGAAGAACCTCAATGTGAAA
FD551228       --> CAATGGTGAGGAAGCTTCTAGAGTACTTAGGGAAGAACCTCAATGTGAAA
FD964486       --> CAATGGTGAGGAAGCTTCTAGAGTACTTAGGGAAGAACCTCAATGTGAAA

               651    -    701
UN10240        --> GAGCTAGACAAGACCAAAGAGTCACTCTTCATGGGTTCAGTTCGAGTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- GAGCTAGACAAGACCAAAGAGTCACTCTTCATGGGTTCAGTTCGAGTCAA  Raphanus raphanistrum subsp. landra
FD547125       <-- GAGCTAGACGAGACCAAAGAGTCACTCTTCATGGGTTCAGTTCGAGTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545053       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV528870       --> GAGCTAGACAAGACCAAAGAGTCACTCTTCATGGGTTCAGTTCGAGTCAA  Raphanus raphanistrum subsp. maritimus
EV566313       --> GAGCTAGACAAGACCAAAGAGTCACTCTTCATGGGTTCAGTTCGAGTCAA  Raphanus raphanistrum subsp. landra
EY906420       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV549615       --> GAGCTAGACGAGACCAAAGAGTCACTCTTCATGGGTTCAGTTCGAGTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551228       --> GAGCTAGACGAGACCAAAGAGTCACTCTTCATGGGTTCAGTTCGAGTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964486       --> GAGCTAGACAAGACCAAAGAGTCACTCTTCATGGGTTCAGTTCGAGTCAA  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN10240        --> CCTCAACTACTATCCCATCTGTCCTAACCCTGACCTAACTGTTGGCGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- CCTCAACTACTATCCCATCTGTCCTAACCCTGACCTAACTGTTGGCGTTG
FD547125       <-- CCTCAACTACTATCCCATCTGTCCTAACCCTGACCTAACTGTTGGCGTTG
EV545053       <-- ..................................................
EV528870       --> CCTCAACTACTATCCCATCTGTCCTAACCCTGACCTAACTGTTGGCGTTG
EV566313       --> CCTCAACTACTATCCCATCTGTCCTAACCCTGACCTAACTGTTGGCGTTG
EY906420       --> ..................................................
EV549615       --> CCTCAACTACTATCCCATCTGTCCTAACCCTGATCTAACTGTTGGCGTTG
FD551228       --> CCTCAACTACTATCCCATCTGTCCTAACCCTGACCTAACTGTTGGCGTTG
FD964486       --> CCTCAACTACTATCCCATCTGTCCTAACCCTGACCTAACTGTCGGCGTTG

               751    -    801
UN10240        --> GTCGCCACTCAGACGTCTCTTCCCTCACCATTCTCTTACAAGACCAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- GTCGCCACTCAGACGTCTCTTCCCTCACCATTCTCTTACAAGACCAGATC
FD547125       <-- GTCGCCACTCAGACGTCTCTTCCCTCACCATTCTCTTACAAGACCAGATC
EV545053       <-- ...................................TTACAAGACCAGATC
EV528870       --> GTCGCCACTCAGACGTCTCTTCCCTCACCATTCTCTTACAAG........
EV566313       --> GTCGCCACTCAGACGTCTCTTCCCTCACCATTCTCTTACAAGACCAGATC
EY906420       --> ..................................................
EV549615       --> GTCGCCACTCAGACGTCTCTTCCCTCACCATTCTCTTACAAGACCAGATC
FD551228       --> GTCGCCACTCAGACGTCTCTTCCCTCACCATTCTCTTACAAGACCAGATC
FD964486       --> GTCGCCACTCAGACGTCTCTTCCCTCACCATTCTCTTACAAGACCAGATC

               801    -    851
UN10240        --> GGTGGCCTCCACGTGCGTTCTCTGTCGTCAGGGAACTGGGTTCACGTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- GGTGGCCTCCATGTGCGCTCTCTGTCGTCAGGGAACTGGGTTCACGTGCC  Raphanus raphanistrum subsp. landra
FD547125       <-- GGTGGCCTCCACGTGCGTTCTCTGTCGTCAGGGAACTGGGTTCACGTGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545053       <-- GGTGGCCTCCACGTGCGTTCTCTGT--CCAGGGAACTGGGTTCACGTGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV528870       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV566313       --> GGTGGCCTCCATGTGCGCTCTCTGTCG.......................  Raphanus raphanistrum subsp. landra
EY906420       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV549615       --> GGTGGCCTCCACGTGCGTTCTCTGTC--CAGGGAACTGGGTTCACGTGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551228       --> GGTGGCCTCCACGTGCGTTCTCTGTCGTCAGGGAACTGGGTTCACGTGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964486       --> GGTGGCCTCCATGCGCGCTCTCTGTCGTCAGGGAACTGGGTTCACTTGCC  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN10240        --> ACCGGTCCCCGGATCTTTCGTGATTAACATCGGAGACGCCATGCAGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ACCGGTCCCCGGATCTTTCGTGATCAACATCGGAGACGCCATGCAGATCT
FD547125       <-- ACCGGTCCCCGGATCTTTCGTGATTAACATCGGAGACGCCATGCAGATCT
EV545053       <-- ACCGGTCCCCGGATCTTTCGTGATTAACATCGGAGACGCCATGCAGATCT
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> ACCGGTCCCCGGATCTTTCGTGATTAACATCGGAGACGCCATGCAGATCT
FD551228       --> ACCGGTCCCCGGATCTTTCGTGATTAACATCGGAGACGCCATGCAGATCT
FD964486       --> ACCGGTCCCCGGATCTTTCGTGATCTACATCGGAGACGCCATGCAGATCT

               901    -    951
UN10240        --> TGAGCAATGGTCGTTACAAGAGCGTGGAGCATCGTGTCTTAGCTAACGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- TGAGCAATGGTCGTTACAAGAGCGTGGAGCACCGTGTCTTAGCTAACGGT
FD547125       <-- TGAGCAATGGTCGTTACAAGAGCGTGGAGCATCGTGTCTTAGCTAACGGT
EV545053       <-- TGAGCAATGGTCGTTACAAGAGCGTGGAGCATCGTGTTTTAGCTAACGGT
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> TGAGCAATGGTCGTTACAAGAGCGTGGAGCATCGTGTCTTAGCTAACGGT
FD551228       --> TGAGCAATGGTCGTTACAAGAGCGTGGAGCATCGTGTCTTAGCTAACGGT
FD964486       --> TGAGCAATGGTCGTTACAAGAGCGTGGAGCACCGTGTCTTAGCTAACGGT

               951    -   1001
UN10240        --> AGTAACAACAGAATCTCGGTTCCTATCTTTGTGAATCCAAAACCAGAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- AGCAACAATAGAATCTCGGTTCCTATCTTTGTGAATCCGAAACCAGAATC
FD547125       <-- AGTAACAACAGAATCTCGGTTCCTATCTTTGTGAATCCAAAACCAGAGTC
EV545053       <-- AGTAACAACAGAATCTCGGTTCCTATCTTTGTGAATCCAAAACCAGAGTC
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> AGTAACAACAGAATCTCGGTTCCTATCTTTGTGAATCCAAAAC.......
FD551228       --> AGTAACAACAGAATCTCGGTTCCTATCTTTGTGAATCCAAAACCAGAGTC
FD964486       --> AGCAACAATAGAATCTCGGTTCCTATCTTTGTGAATCCGAAACCAGAATC

               1001   -   1051
UN10240        --> CGTGATTGGTCCTCTTCCTGAGGTGATAGCAAATGGAGAGGAACCTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- AGTGATTGGTCCTCTTCCTGAGGTGATAGCAAATGGAGAGGAACCTATCT
FD547125       <-- CGTGATTGGTCCTCTTCCTGAGGTGATAGCAAATGGAGAGGAACCTATCT
EV545053       <-- CGTGATTGGTCCTCTTCCTGAGGTGATAGCAAATGGAGAGGAACCTATCT
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> ..................................................
FD551228       --> CGTGATTGGTCCTCTTCCTGAGGTGATAGCAAATGGAGAGGAACCTATCT
FD964486       --> AGTGATTGGTCCTCTTCCTGAGGTGATAGCAAATGGAGAGGAACCTATCT

               1051   -   1101
UN10240        --> ACAGAGATGTCGTGTACTCTGATTATGTCAGGTACTTCTTCAAGAAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ATAGAGAGGTCGTGTATTCTGATTACGTCAGGTACTTCTTCAAGAAGGCA
FD547125       <-- ACAGAGATGTCGTGTACTCTGATTATGTCAGGTACTTCTTCAAGAAGGCA
EV545053       <-- ACAGAGATGTCGTGTACTCTGATTATGTCAGGTACTTTTTCAAGAAGGCA
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> ..................................................
FD551228       --> ACAGAGATGTCGTGTACTCTGATTATGTCAG-TACTTCTTCAAGAAGGCA
FD964486       --> ATAGAGAGGTCGTGTATTCTGATTAcg.......................

               1101   -   1151
UN10240        --> CATGATGGAAAGAAGACCGTTGATTATGCCAAGATATGATCACAATCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- CATGATGGAAAGAATACTGTTGATTTTGCCAAGATATGATCACAATCAGC
FD547125       <-- CATGATGGAAAGAAGACCGTTGATTATGCCAAGATATGATCACAATCAGC
EV545053       <-- CATGATGGAAAGAAGACCGTTGATTATGCCAAGATATGATCACAATCAGC
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> ..................................................
FD551228       --> CATGATGGAAAGAAGACCGTTGATTATGCCAAGATATGATCACAATCAGC
FD964486       --> ..................................................

               1151   -   1201
UN10240        --> TCTCGATGGAGTTTGGTTTCTTGGTTTTATTTGTTTGTTGCTCCTTGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- TCTCGATGGAGTTTGGTTTCTTGGTTTTATTTGTTTGTTGCTCCTTGTCT
FD547125       <-- TCTCGATGGAGTTTGGTTTCTTGGTTTTATTTGTTTGTTGCTCCTTGTCT
EV545053       <-- TCTCGATGGAGTTTGGTTTCTTGGTTTTATTTGTTTGTTGCTCCTTGTCT
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> ..................................................
FD551228       --> TCTCGATGGAGTTTGGTTTCTTGGTTTTATTTGTTTGTTGCTCCTTGTCT
FD964486       --> ..................................................

               1201   -   1251
UN10240        --> GTATTTGTGTGTGAATAAAGAAGAGACATAGTCTGATGGCTTCTTGGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- GTATTTGTGTGTGAATAAAGAAGAGACATAGTCTGATGGCTTCTTGGGAC
FD547125       <-- GTATTTGTGTGTGAATAAAGAAGAGACATAGTCTGATGGCTTCTTGGGAC
EV545053       <-- GTATTTGTGTGTGAATAAAGAAGAGACATAGTTTGATGGCTTCTTGGGAC
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> ..................................................
FD551228       --> GTATTTGTGTGTGAA-AAAGA-GAGACATAGTCTGATGGCTTCTTGGGAC
FD964486       --> ..................................................

               1251   -   1301
UN10240        --> TTTATTTGATAGTGTTGTATAAGCTGCAATTTCTCTTTTTGTCTACTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- TTTATTTGATAGTGTTGTATAAGCTGCAATTTCTCTTTTTGTCTACTTAA
EV545053       <-- TTTATTTGATAGTGTTGTATAAGCTGCAATTTCTCTTTTTGTCTACTTAA
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> ..................................................
FD551228       --> TTTATTTGATAGTGTTGTATA.............................
FD964486       --> ..................................................

               1301   -   1351
UN10240        --> GTGTTACGCAATTTGCCCATGATTTATTCGTTTGTATTTGTATTTTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- GTGTTACGCAATTTGCCCATGATTTATTCGTTTGTATTTGTATTTTTTAT
EV545053       <-- GTGTTACGCAATTTGCCCATGATTTATTCGTTTGTATTTGTATTTTTTAT
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> ..................................................
FD551228       --> ..................................................
FD964486       --> ..................................................

               1351   -   1401
UN10240        --> TATAAGCTTCGAGTATTATGCAATATTTTTGAAATTGGTTATTTTACCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571473       <-- ..................................................
FD547125       <-- TATAAGCTTCGAGTATTATGCAATATTTTTGAAATTGGTTATTTTACCCG
EV545053       <-- TATAAGCTTCGAGTATTATGCAAT..........................
EV528870       --> ..................................................
EV566313       --> ..................................................
EY906420       --> ..................................................
EV549615       --> ..................................................
FD551228       --> ..................................................
FD964486       --> ..................................................