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Alignment for radish unigene UN10348

               1      -     51
UN10348        --> GTGAAATGCCTCGAGATCTTCATTGTCATTCACTATTGTTACAAATGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ..................................................
EX898372       <-- ..................................................
FD578331       <-- ..................................................
EV548964       <-- ..................................................
FD540618       <-- ..................................................
EX748866       <-- ..................................................
EV552620       <-- ..................................................
FD582505       --> GTGAAATGCCTCGAGATCTTCAATGTCATTCACTATTGTTACAAATGGCT
EX901949       --> ........gCTCGAAATCTTCATTGTCATTCACTATTGTTACAAATAGCT
EV547502       --> ..................................................
FD554849       --> ..................................................
FD537078       --> ..................................................
EV544541       --> ..................................................

               51     -    101
UN10348        --> AGGGTCTCTCTGTTAATTCTCCAAGCTTTATAATAATTAAACTATCATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ..................................................
EX898372       <-- ..................................................
FD578331       <-- ..................................................
EV548964       <-- ..................................................
FD540618       <-- ..................................................
EX748866       <-- ..................................................
EV552620       <-- ..................................................
FD582505       --> AGGGTCTCTCTGTTAATTCTCCAAGCTTTATAATAATGAAACTATCATTA
EX901949       --> AGGGTCTCTCTGTTAATTCTCCAAGCTTTATAATAATTAAACTATCATTA
EV547502       --> ..................................................
FD554849       --> ..................................................
FD537078       --> ..................................................
EV544541       --> ..................................................

               101    -    151
UN10348        --> AATTAGACCTAATGATCAAGGATCTATATGCTCCTAGTAGTTTGTGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ..................................................
EX898372       <-- ..................................................
FD578331       <-- ..................................................
EV548964       <-- ..................................................
FD540618       <-- ..................................................
EX748866       <-- ..................................................
EV552620       <-- ..................................................
FD582505       --> AATTAGACCTAATGATCAAGGATCTATATGCTCCTAGTAGTTTGTGAACG
EX901949       --> AATTAGACCTAATGATCAAGGATCTATATGCTCCTAGTAGTTTGTGAAGG
EV547502       --> ..................................................
FD554849       --> ..................................................
FD537078       --> ..................................................
EV544541       --> ..................................................

               151    -    201
UN10348        --> AAAAACATAGGTGGCTACATACACATGTAAACGATTAACGAATAATAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ..................................................
EX898372       <-- ..................................................
FD578331       <-- ..................................................
EV548964       <-- ..................................................
FD540618       <-- ..................................................
EX748866       <-- ..................................................
EV552620       <-- ..................................................
FD582505       --> AAAAACATAGGTGGCTACATACACATGTAAACGATTAACGAATAATAGTA
EX901949       --> AAAAACATAGGTGGCTACATATACATGTAAACGATTAACGAATAATAGTA
EV547502       --> .....................CACATGTAAACGATTAACGAATAATAGTA
FD554849       --> ............................gAACGATTAACGAATAATAGTA
FD537078       --> ............................agACGATTAACGAATAATAGTA
EV544541       --> ..................................................

               201    -    251
UN10348        --> TACCTCTTCTTTACAACTCTAATCAAAACTTAAAACATGGTACCCAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ............................CTTAAAACATG-TACCCAAGCA
EX898372       <-- ..................................ACATG-TACCCAAGCA
FD578331       <-- ..................................................
EV548964       <-- ..................................................
FD540618       <-- ..................................................
EX748866       <-- ..................................................
EV552620       <-- ..................................................
FD582505       --> TACCTCTTCTTTACAACTCTAATCAAAACTTAAAACATGGTACCCAAGCA
EX901949       --> TACCTCTTCTTTACAACTCTAATCAAAACTTAAAACATGGTACCCAAGCA
EV547502       --> TACCTCTTCTTTACAACTCTAATCAAAACTTAAAACATGGTACCCAAGCA
FD554849       --> TACCTCTTCTTTACAACTCTAATCAAAACTTAAAACATGGTACCCAAGCA
FD537078       --> TACCTCTTCTTTACAACTCTAATCAAAACTTAAAACATGGTACCCAAGCA
EV544541       --> ..................................................

               251    -    301
UN10348        --> ATATAAATGGACAAAAGACGTAAGAAGGAAATGATGGGTACCAAAGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ATATAAATGGACAAAAGACGTAAGAAGGAAATGATGGGTACCAAAGTGAT
EX898372       <-- ATATAAATG-ACAAA-GACGTAAGAAGGAAATGATGGGTACCAAAGTGAT
FD578331       <-- .............................AATGATGG-TACCAAAGTGAT
EV548964       <-- ..................................ggtagatCAAAGTGAT
FD540618       <-- ..................................................
EX748866       <-- ..................................................
EV552620       <-- ..................................................
FD582505       --> ATATAAATGGACAAAAGACGTAAGAAGGAAATGATGGGTACCAAAGTGAT
EX901949       --> ATATAAATGGACAAAAGACGTAAGAAGGAAATGATGGGTACCAAAGTGAT
EV547502       --> ATATAAATGGACAAAAGACGTAAGAAGGAAATGATGGGTACCAAAGTGAT
FD554849       --> ATATAAATGGACAAAAGACGTAAGAAGGAAATGATGGGTACCAAAGTGAT
FD537078       --> ATATAAATGGACAAAAGACGTAAGAAGGAAATGATAG--ACCAAAGTGAT
EV544541       --> ..................................ggtagatCAAAGTGAT

               301    -    351
UN10348        --> TCATCCAAAGATATATTCTAAATCCATAACAGTTAAGTTCTTCTCCGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- TCATCCAAAGATATATTCTAAATCCATAACAGTTAAGTTCTTCTCCGGTC
EX898372       <-- TCATCCAAAGATATATTCTAAATCCATAGCAGTTAAGTTCTTCTCCGGTC
FD578331       <-- TCATCCAAAGATATATTCTAAATCCATAACAGTTAAGTTCTTCTCCGGTC
EV548964       <-- TCATCCAAAGATATATTCTAAATCCATAACAGTTAAGTTCTTCTCCGGTC
FD540618       <-- ..................................................
EX748866       <-- ..................................................
EV552620       <-- ..................................................
FD582505       --> TCATCCAAAGATATATTCTAAATCCATAACAGTTAAGTTCTTCTCCGGTC
EX901949       --> TCATCCAAAGATATATTCTAAATCCATAGCAGTTAAGTTCTTCTCCGGTC
EV547502       --> TCATCCAAAGATATATTCTAAATCCATAACAGTTAAGCTCTTCTCCGGTC
FD554849       --> TCATCCAAAGATATATTCTAAATCCATAACAGTTAAGTTCTTCTCCGGTC
FD537078       --> TCATCCAAAGATATATTCTAAATCCATAACAGTTAAGTTCTTCTCCGGTC
EV544541       --> TCATCCAAAGATATATTCTAAATCCATAACAGTTAAGTTCTTCTCCGGTC

               351    -    401
UN10348        --> TCCATCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- TCCATCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA
EX898372       <-- TCCATCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA
FD578331       <-- TCCATCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA
EV548964       <-- TCCGTCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA
FD540618       <-- ..................................TATTGATCTATAAAAA
EX748866       <-- ..................................................
EV552620       <-- ..................................................
FD582505       --> TCCATCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA
EX901949       --> TCCATCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA
EV547502       --> TCCATCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA
FD554849       --> TCCATCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA
FD537078       --> TCCATCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA
EV544541       --> TCCGTCGATAAGAAGCATCGCCCATATGATATCATATTGATCTATAAAAA

               401    -    451
UN10348        --> TCCTTCAAACTCACGGGTAAAACCAGATACGCCAGCTCACCTAGTTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- TCCTTCAAACTCACGGGTAAAACCA-ATACGCCAGCTCACCTAGTTGGAA
EX898372       <-- TCCTTCGAACTCACGGGTAAAACCAGATACGCCAGCTCACCTAGTTGGAA
FD578331       <-- TCCTTCAAACTCACGGGTAAAACCAGATACGCCAGCTCACCTAGTTGGAA
EV548964       <-- TCCTTCAAACTCACGGGTAAAACCAGATACGCCAGCTCACCTAGTTGGAA
FD540618       <-- TCCTTCAAACTCACGGGTAAAACCAGATACGCCAGCTCACCTGGTTGGAA
EX748866       <-- ..................AAAACCAGATACGCCAGCTCAC-TAGTTGGAA
EV552620       <-- ..................................................
FD582505       --> TCCTTCAAACTCACGGGTAAAACCAGATACGCCAGCTCACCTAGTTGGAA
EX901949       --> TCCTTCGAACTCACGGGTAAAACCAGATACGCCAGCTCACCTAGTTGGAA
EV547502       --> TCCTTCAAACTCACGGGTAAAACCAGATACGCCAGCTCACCTAGTTGGAA
FD554849       --> TCCTTCAAACTCACGGGTAAAACCA-ATACGCCAGCTCACCTAGTTGGAA
FD537078       --> TCCTTCAAACTCACGGGTAAAACCAGATACGCCAGCTCACCTGGTTGGAA
EV544541       --> TCCTTCAAACTCACGGGTAAAACCAGATACGCCAGCTCACCTAGTTGGAA

               451    -    501
UN10348        --> ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTT-T
EX898372       <-- ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT
FD578331       <-- ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT
EV548964       <-- ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT
FD540618       <-- ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT
EX748866       <-- ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT
EV552620       <-- ..................................................
FD582505       --> ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT
EX901949       --> ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT
EV547502       --> ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT
FD554849       --> ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTT-T
FD537078       --> ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT
EV544541       --> ATAGGGTTTGGACCACTAGGAACTTCATGATCATCATTTGCAAACTTTCT

               501    -    551
UN10348        --> CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTGGATGCAGATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTCGATGCAGATCCA  Raphanus raphanistrum subsp. landra
EX898372       <-- CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTGGATGCAGATCCA  Raphanus sativus cv Early Scarlet Globe
FD578331       <-- CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTCGATGCAGATCCA  Raphanus sativus cv Rat-Tail Radish #3870
EV548964       <-- CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTGGATGCAGATCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540618       <-- CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTGGATGCAGATCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748866       <-- CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTGGATGCAGATCCA  Raphanus raphanistrum subsp. maritimus
EV552620       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD582505       --> CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTCGATGCAGATCCA  Raphanus sativus cv Rat-Tail Radish #3870
EX901949       --> CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTGGATGCAGATCCA  Raphanus sativus cv Early Scarlet Globe
EV547502       --> CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTCGATGCAGATCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554849       --> CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTCGATGCAGATCCA  Raphanus raphanistrum subsp. landra
FD537078       --> CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTGGATGCAGATCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544541       --> CCTTCTAGAAGTATGGCTGCGACGTGTGCGAGCCTTTGGATGCAGATCCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN10348        --> TTGTTGATGAAGCTGGAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- TTGTTGATGAAGCTGGAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus raphanistrum subsp. landra
EX898372       <-- TTGTTGATGAAGCTGAAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus sativus cv Early Scarlet Globe
FD578331       <-- TTGTTGATGAAGCTGGAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus sativus cv Rat-Tail Radish #3870
EV548964       <-- TTGTTGATGAAGCTGAAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540618       <-- TTGTTGATGAAGCTGAAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748866       <-- TTGTTGATGAAGCTGGAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus raphanistrum subsp. maritimus
EV552620       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD582505       --> TTGTTGATGAAGCTGGAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus sativus cv Rat-Tail Radish #3870
EX901949       --> TTGTTGATGAAGCTGAAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus sativus cv Early Scarlet Globe
EV547502       --> TTGTTGATGAAGCTGGAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554849       --> TTGTTGATGAAGCTGGAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus raphanistrum subsp. landra
FD537078       --> TTGTTGATGAAGCTGAAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544541       --> TTGTTGATGAAGCTGAAACGGAAGATTCGAGAAGAACCCTCTCGAAGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN10348        --> GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT
EX898372       <-- GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCGTAAGGTTGAT
FD578331       <-- GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT
EV548964       <-- GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT
FD540618       <-- GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT
EX748866       <-- GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT
EV552620       <-- .......................ATGAGTCATGGGGATCATAAGGTTGAT
FD582505       --> GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT
EX901949       --> GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCGTAAGGTTGAT
EV547502       --> GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT
FD554849       --> GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT
FD537078       --> GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT
EV544541       --> GCAACCGTAGATGTGGATCGATGATGAGTCATGGGGATCATAAGGTTGAT

               651    -    701
UN10348        --> GAAGAGAATGAAAGATAAGAATATGATGAAAAGAAGAAGAGTATGAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- GAAGAGAATGAAAGATAAGAATATGATGAAAAGAAGAAGAGTATGAGAAT  Raphanus raphanistrum subsp. landra
EX898372       <-- GAAGAGAATGAAGGATAAGAATATGATGAAAAGCAGAAGAGTATGAGAAT  Raphanus sativus cv Early Scarlet Globe
FD578331       <-- GAAGAGAATGAAAGATAAGAATATGATGAAAAGAAGAAGAGTATGAGAAT  Raphanus sativus cv Rat-Tail Radish #3870
EV548964       <-- GAAGAGAATGAAAGATAAGAATATGATGAAAAGAAGAAGAGTATTAGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540618       <-- GAAGAGAATGAAAGATAAGAATATGATGTAAAGAAGAAGAGTATTAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748866       <-- GAAGAGAATGAAAGATAAGAATATGATGAAAAGAAGAAGAGTATGAGAAT  Raphanus raphanistrum subsp. maritimus
EV552620       <-- GAAGAGAATGAAAGATAAGAATATGATGAAAAGAAGAAGAGTATGAGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD582505       --> GAAGAGAATGAAAGATAAGAATATGATGAAAAGAAGAAGAGTATGAGAAT  Raphanus sativus cv Rat-Tail Radish #3870
EX901949       --> GAAGAGAATGAAGGATAAGAATATGATGAAAAGCAGAAGAGTATGAGAAT  Raphanus sativus cv Early Scarlet Globe
EV547502       --> GAAGAGAATGAAAGATAAGAATATGATGAAAAGAAGAAGAGTATGAGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554849       --> GAAGAGAA..........................................  Raphanus raphanistrum subsp. landra
FD537078       --> GAAGAGAATGAAAGATAAGAATATGATGTAAAGAAGAAGAGTATTAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544541       --> GAAGAGAATGAAAGATAAGAATATGATGAAAAGAAGAAGAGTATTAGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN10348        --> GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGCAATTTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGCAATTTAGA
EX898372       <-- GTGATGATTTAGTATTGGTTTGGTCATTCGATGTTGCCGTGCAATTTAGA
FD578331       <-- GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGCAATTTAGA
EV548964       <-- GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGCAATTTAGA
FD540618       <-- GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGCAATTTAGA
EX748866       <-- GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGCAATTTAGA
EV552620       <-- GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGAAATTTAGA
FD582505       --> GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGCAATTTAGA
EX901949       --> GTGATGATTTAGTATTGGTTTGGT..........................
EV547502       --> GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGAAATTTAGA
FD554849       --> ..................................................
FD537078       --> GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGCAATTTAGA
EV544541       --> GTGATGATTTAGTATTGGTTTGGTCATTTGATGTTGCCATGCAATTTAAA

               751    -    801
UN10348        --> AAAAGAAATAACCCACCCCCCAAGATCCCAAGAGGGTTCAATATCCATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- AAAA..............................................  Raphanus raphanistrum subsp. landra
EX898372       <-- AAAAGAAATAACCCACCCCCCAAGATCCCAAGAGGGTTCAATATCCATTA  Raphanus sativus cv Early Scarlet Globe
FD578331       <-- AAAAGAGATAACCCACCCCCCAAGATCCCAAGAGGGTTCAATATCCATTA  Raphanus sativus cv Rat-Tail Radish #3870
EV548964       <-- AAAAGAAATAACCCACCCCCCAAGATCCCAAGAGGGTTCAATATCCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540618       <-- AAAAGAGATAACCCACCCACCAAGATCCCAAGAGGGTTCAATATCCATTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748866       <-- AAAAGAAATAACCCACCCCCCAAGATCCCAAGAGGGTTCAATATCCATTG  Raphanus raphanistrum subsp. maritimus
EV552620       <-- AAAAGAAATAACCCACCCCCCAAGATCCCAAGAGGGTTCAATATCCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD582505       --> AAAAGAGATAACCCACCCCCCAAGATCCCAAGAGG-TTCAATATCCATTA  Raphanus sativus cv Rat-Tail Radish #3870
EX901949       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV547502       --> AAAAGAAATAACCCACCCCCCAAGATCCCAAGAGGGTTCAATATCCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554849       --> ..................................................  Raphanus raphanistrum subsp. landra
FD537078       --> AAAAGAGATAACCCACCCACCAAGATCCCAAGAGGGTTCAATATCCATTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544541       --> AAAAGAAATAACCCACCCCCCAAGATCCCAAGAGGGTTCAATATCCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN10348        --> ACCAGAAACGAACAACTCGGGAGCTGGTCAGAGCCACGAGATAGCAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ..................................................
EX898372       <-- ACCAGAAACGAACAACTCGGGAGCTGGTCAGAGCCACGAGATAGCAGAAA
FD578331       <-- ACCAGAAACGAACAACTCGGGAGCTGGTCAGAGCCACGAGATAGCAGAAA
EV548964       <-- ACCAGAAACGAACAACTCGGGAGCTGGTCcc...................
FD540618       <-- ACCAGAAACGAACAACTCGGGAGCTGGTCAGAGCCACGAGATAGCAGAAA
EX748866       <-- ACCAGAAACGAACAACTCGGGAGCTGGTCAGAGCCACGAGATAGCAGAAA
EV552620       <-- ACCAGAAACGAACAACTCGGGAGCTGGTCAGAGCCACGAGATAGCAGAAA
FD582505       --> ..................................................
EX901949       --> ..................................................
EV547502       --> ACCAGAAACGAACAACTCGGGAGCTGGTCAGAGCCACGAGATAGCAGAAA
FD554849       --> ..................................................
FD537078       --> ACCAGAAACGAACAACTCGGGAGCTGGTCAGAGCCACGAGATAGCAGAAA
EV544541       --> ACCAGAAACGAACAACTCGGGAGCTGGTCcc...................

               851    -    901
UN10348        --> GCAGAGAATAAAATAAGAAGATGATGATAAAGAATAAGAAGAAGAATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ..................................................
EX898372       <-- GCAGAGAATAAAATAAGAAGATGATGATAAAGAATAAGAAGAAAAATGAG
FD578331       <-- GCAGAGAATAAAATAAGAAGATGATGATAAAGAACAAGAAGAAGAATGAG
EV548964       <-- ..................................................
FD540618       <-- GTAGAGAATAAAATAAGAAGATGATGATAAAGAATAAGAAGAAGAATGAG
EX748866       <-- GCAGAGAATAAAATAAGAAGATGATGATAAAGAATAAGAAG---AATGAG
EV552620       <-- GCAGAGAATAAAATAAGAAGATGATGATAAAGAACAAGAAGAAGAATGAG
FD582505       --> ..................................................
EX901949       --> ..................................................
EV547502       --> GCAGAGAATAAAATAAGAAGATGATGATAAAGAACAAGAAGAAGAATGAG
FD554849       --> ..................................................
FD537078       --> GTAGAGAATAAAA.....................................
EV544541       --> ..................................................

               901    -    951
UN10348        --> ATGAAACAAAAGAGAGATCTAGTAGTTAAGAAGAAGAAAGAGCCTCTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ..................................................
EX898372       <-- ATGAAACAAAAGAGAGATCTAGTAGTTAAGAAGAAGAAAGAGCCTCTAAG
FD578331       <-- ATGAAACAAAAGAGAGATCTAGTAGTTAAGAAGAAGAAAGAGCCTCTAAG
EV548964       <-- ..................................................
FD540618       <-- ATGAAACAAAAGAGAGATCTAGTAGTTAACAAGAAGAAAGAGCCTCT...
EX748866       <-- ATGAAACAAAAGAGAGATCTAGCAGTTAAGAAGAAGAAAGAGCCTCTAAG
EV552620       <-- ATGAAACAAAAGAGAGATCTAGTAGTTAAGAAGAAGAAAGAGCCTCTAAG
FD582505       --> ..................................................
EX901949       --> ..................................................
EV547502       --> ATGAAACAAAAGAGAGATCTAGTAGTTAAGAAGAAGAAAGAGCCTCTAAG
FD554849       --> ..................................................
FD537078       --> ..................................................
EV544541       --> ..................................................

               951    -   1001
UN10348        --> AAAAGGAGAAGAAGTGAGAGATTTTCAGATTACCACACACACTTGCATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ..................................................
EX898372       <-- AAAAGGAGAAGAAGTGAGAGATTTTCcc......................
FD578331       <-- AAAAGGAGAAaaa.....................................
EV548964       <-- ..................................................
FD540618       <-- ..................................................
EX748866       <-- AAAAGGAGAA-AAATGAGAGATTTTCAGATTACCACACACACTTGCATTT
EV552620       <-- AAAAGGAG..........................................
FD582505       --> ..................................................
EX901949       --> ..................................................
EV547502       --> AAAAGGAG..........................................
FD554849       --> ..................................................
FD537078       --> ..................................................
EV544541       --> ..................................................

               1001   -   1051
UN10348        --> CATTAATAAAGTAAAACCCGAAGTTGTATGCAGAACGGTCACGAGGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ..................................................
EX898372       <-- ..................................................
FD578331       <-- ..................................................
EV548964       <-- ..................................................
FD540618       <-- ..................................................
EX748866       <-- CATTAATAAAGTAAAACCCGAAGTTGTATGCAGAACGGTCACGAGGTATG
EV552620       <-- ..................................................
FD582505       --> ..................................................
EX901949       --> ..................................................
EV547502       --> ..................................................
FD554849       --> ..................................................
FD537078       --> ..................................................
EV544541       --> ..................................................

               1051   -   1101
UN10348        --> AAATTACCAAATCACCCTTTTTGCAAGCAGCGCAGGAAAGAATGGACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559077       <-- ..................................................
EX898372       <-- ..................................................
FD578331       <-- ..................................................
EV548964       <-- ..................................................
FD540618       <-- ..................................................
EX748866       <-- AAATTACCAAATCACCCTTTTTGCAAGCAGCGCAGGAAAGAATGGACAAG
EV552620       <-- ..................................................
FD582505       --> ..................................................
EX901949       --> ..................................................
EV547502       --> ..................................................
FD554849       --> ..................................................
FD537078       --> ..................................................
EV544541       --> ..................................................

               1101   -   1151
UN10348        --> AGTTGAATCC
                   ~~~~~~~~~~
FD559077       <-- ..........
EX898372       <-- ..........
FD578331       <-- ..........
EV548964       <-- ..........
FD540618       <-- ..........
EX748866       <-- AGTTGAATCC
EV552620       <-- ..........
FD582505       --> ..........
EX901949       --> ..........
EV547502       --> ..........
FD554849       --> ..........
FD537078       --> ..........
EV544541       --> ..........