Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN10392

               1      -     51
UN10392        --> AAATGGGTATGAGATTTGTGTTTTCATACTTGCGGAAGAAGATAAATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- AAATGGGTATGAGATTTGTGTTTTCATACTTGCGGAAGAAGATAAATCCT
EV542225       <-- ..................................................
EX766459       <-- ..................................................
FD568054       <-- ..................................................
FD937455       <-- ..................................................
EX762110       --> ..................................................
FD941929       --> ..................................................

               51     -    101
UN10392        --> CAGAGCTAGCTTGAATATTGGTTTAAGTGCATTGACTTGGATGCAAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- CAGAGCTAGCTTGAATATTGGTTTAAGTGCATTGACTTGGATGCAAATGG
EV542225       <-- .......................................GATGCAAATGG
EX766459       <-- ..................................................
FD568054       <-- ..................................................
FD937455       <-- ..................................................
EX762110       --> ..................................................
FD941929       --> ..................................................

               101    -    151
UN10392        --> GATACTGACGCGAAATGAGATGCAATTCTTTTATGAGGAGCAGTTACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- GATACTGACGCGAAATGAGATGCAATTCTTTTATGAGGAGCAATTACATC
EV542225       <-- GATACTGACGCGAAATGAGATGCAATTCTTTTATGAGGAGCAGTTACATC
EX766459       <-- ........ggaGAAATGAGATGCAATTCTTTTATGAGGAGCAGTTACATC
FD568054       <-- ..................................................
FD937455       <-- ..................................................
EX762110       --> ........ggaGAAATGAGATGCAATTCTTTTATGAGGAGCAGTTACATC
FD941929       --> ................GAGATGCAATTCTTTTATGAGGAGCAGTTACATC

               151    -    201
UN10392        --> GAATGGAGTGTATGGCGCAAGAGGCTGTTCTTTTTGAGGATATATTATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- GAATGGAGTGTATGGCGCAAGAGGCTGTTCTTTTTGAGGATATATTATGT
EV542225       <-- GAATGGAGTGTATGGCGCAAGAGGCTGTTCTTTTTGAGGATATATTATGT
EX766459       <-- GAATGGAGTGTATGGCGCAAGAGGCTGTTCTTTTTGAGGATATATTATGT
FD568054       <-- ..................................................
FD937455       <-- ..................................................
EX762110       --> GAATGGAGTGTATGGCGCAAGAGGCTGTTCTTTTTGAGGATATATTATGT
FD941929       --> GAATGGAGTGTATGGCGCAAGAGGCTGTTCTTTTTGAGGATATATTATGT

               201    -    251
UN10392        --> CAGCTAATTGATATGATCGGACCAGAGAATGAAAGCTATATAACCCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- CAGCTAATTGATATGATCGGACCAGAGAATGAAAGCTATATAACCCTGAA
EV542225       <-- CAGCTAATTGATATGATCGGACCAGAGAATGAAAGCTATATAACCCTGAA
EX766459       <-- CAGCTAATTGATATGATCGGACCAGAGAATGAAAGCTATATAACCCTGAA
FD568054       <-- .................................................A
FD937455       <-- ..................................................
EX762110       --> CAGCTAATTGATATGATCGGACCAGAGAATGAAAGCTATATAACCCTGAA
FD941929       --> CAGCTAATTGATATGATCGGACCAGAGAATGAAAGCTATATAACCCTGAA

               251    -    301
UN10392        --> TGACCTGAAGGGCTCCAAACTCTCTGGAAACGTCTTCAACATCCTTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- TGACCTGAAGGGCTCCAAACTCTCTGGAAACGTCTTCAACGTCCTTTTTA
EV542225       <-- TGACCTGAAGGGCTCCAAACTCTCTGGAAACGTCTTCAACATCCTTTTTA
EX766459       <-- TGACCTGAAGGGCTCCAAACTCTCTGGAAACGTCTTCAACATCCTTTTTA
FD568054       <-- TGACCTGAAGGGCTCCAAACTCTCTGGAAACGTCTTCAACATCCTTTTTA
FD937455       <-- ........AGGGCTCCAAACTCTCTGGAAACGTCTTCAACATCCTTTTTA
EX762110       --> TGACCTGAAGGGCTCCAAACTCTCTGGAAACGTCTTCAACATCCTTTTTA
FD941929       --> TGACCTGAAGGGCTCCAAACTCTCTGGAAACGTCTTCAACATCCTTTTTA

               301    -    351
UN10392        --> ATCTTAATAAATTTATGGCATTTGAGACACGGGATCCATTCCTCATTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- ATCTTAATAAATTTATGGCATTTGAGACACGGGATCCATTCCTCATTCGT
EV542225       <-- ATCTTAATAAATTTATGGCATTTGAGACACGGGATCCATTCCTCATTCGT
EX766459       <-- ATCTTAATAAATTTATGGCATTTGAGACACGGGATCCATTCCTCATTCGT
FD568054       <-- ATCTTAATAAATTTATGGCATTTGAGACACGGGATCCATTCCTCATTCGT
FD937455       <-- ATCTTAATAAATTTATGGCATTTGAGACACGGGATCCATTCCTCATTCGT
EX762110       --> ATCTTAATAAATTTATGGCATTTGAGACACGGGATCCATTCCTCATTCGT
FD941929       --> ATCTTAATAAATTTATGGCATTTGAGACACGGGATCCATTCCTCATTCGT

               351    -    401
UN10392        --> CAGGAGCGTGAGAACCCTACATTGACAGAGTGGGACCGTTTTGCACATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- CAGGAGCGTGAGAACCCTACATTGACAGAGTGGGACCGTTTTGCACATAG
EV542225       <-- CAGGAGCGTGAGAACCCTACATTGACAGAGTGGGATCGTTTTGCACATAG
EX766459       <-- CAGGAGCGTGAGAACCCTACATTGACAGAGTGGGACCGTTTTGCACATAG
FD568054       <-- CAGGAGCGTGAGAACCCTACATTGACAGAGTGGGACCGTTTTGCACATAG
FD937455       <-- CAGGAGCGTGAGAACCCTACATTGACAGAGTGGGATCGTTTTGCACATAG
EX762110       --> CAGGAGCGTGAGAACCCTACATTGACAGAGTGGGACCGTTTTGCACATAG
FD941929       --> CAGGAGCGTGAGAACCCTACATTGACAGAGTGGGATCGTTTTGCACATAG

               401    -    451
UN10392        --> AGAGTACATAAGGCTTTCGATGGAAGAAGATGTTGAAGATGCATCGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- AGAGTACATAAGGCTTTCGATGGAAGAAGATGTTGAAGATGCATCGAATG
EV542225       <-- AGAGTACATAAGGCTTTCGATGGAAGAAGATGTTGAAGATGCATCGAATG
EX766459       <-- AGAGTACATAGGGCTTTCGATGGAAGAAGATGTTGAAGATGCTTCGAATG
FD568054       <-- AGAGTACATAAGGCTTTCGATGGAAGAAGATGTTGAAGATGCATCGAATG
FD937455       <-- AGAGTACATAAGGCTTTCGATGGAAGAAGATGTTGAAGATGCATCGAATG
EX762110       --> AGAGTACATAGGGCTTTCGATGGAAGAAGATGTTGAAGATGCTTCGAATG
FD941929       --> AGAGTACATAAGGCTTTCGATGGAAGAAGATGTTGAAGATGCATCGAATG

               451    -    501
UN10392        --> GAAGTGCTGAGGTTTGGGATGAGTCATTGGAGGCTCCCTTCTGAGTTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- GAAGTGCTGAGGTTTGGGATGAGTCATTGGAGGCTCCCTTCTGAGTTCAT
EV542225       <-- GAAGTGCTGAGGTTTGGGATGAGTCATTGGAGGCTCCCTTCTGAGTTCAT
EX766459       <-- GAAGTGCTGAGGTTTGGGATGAGTCATTGGAGGCTCCCTTCTGAGTTCAT
FD568054       <-- GAAGTGCTGAGGTTTGGGATGAGTCATTGGAGGCTCTCTTCTGAGTTCAT
FD937455       <-- GAAGTGCTGAGGTTTGGGATGAGTCATTGGAGGCTCCCTTCTGAGTTCAT
EX762110       --> GAAGTGCTGAGGTTTGGGATGAGTCATTGGAGGCTCCCTTCTGAGTTCAT
FD941929       --> GAAGTGCTGAGGTTTGGGATGAGTCATTGGAGGCTCCCTTCTGAGTTCAT

               501    -    551
UN10392        --> CTAGGGTATTAGTGAACAGAAGAAATATCAAAATCATTGCGAAAAATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- CTAGGGTATTAGTGAACAGAAGAAATATCAAAATCATTGAGAAAAATCTT
EV542225       <-- CTAGGGTATTAGTGAACAGAAGAAATATCAAAATCATTGCGAAAAATCTT
EX766459       <-- CTAGGGTATTAGTGAACAGAAGAAATATCAAAATCATTGCGAAAAATCTT
FD568054       <-- CTAGGGTATTAGTGAACAGAAGAAATATCAAAATCATTGAGAAAAATCTT
FD937455       <-- CTAGGGTATTAGTGAACAGAAGAAATATCAAAATCATTGCGAAAAATCTT
EX762110       --> CTAGGGTATTAGTGAACAGAAGAAATATCAAAATCATTGCGAAAAATCTT
FD941929       --> CTAGGGTATTAGTGAACAGAAGAAATATCAAAATCATTGCGAAAAATCTT

               551    -    601
UN10392        --> GGGAGCTATGTGAAGTAACGAAAGAGAAAGAAGAGTATATCCTCTGTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- GGGAGCTATGTGAAGTAACGAAAGAGAAAGAAGAGTATATCCTCTATCTG
EV542225       <-- GGGAGCTATGTGAAGTAACGAAAGAGAAAGAAGAGTATATCCTCTGTCTG
EX766459       <-- GGGAGCTATGTGAAGTAACGAAAGAGAAAGAAGAGTACATCCTCTGTCTG
FD568054       <-- GGGAGCTATGTGAAGTAACGAAAGAGAAAGAAGAGTATATCCTCTATCTG
FD937455       <-- GGGAGCTATGTGGAGTAACGAAAGAGAAAGAAGAGTATATCCTCTGTCTG
EX762110       --> GGGAGCTATGTGAAGTAACGAAAGAGAAAGAAGAGTACATCCTCTGTCTG
FD941929       --> GGGAGCTATGTGGAGTAACGAAAGAGAAAGAAGAGTATATCCTCTGTCTG

               601    -    651
UN10392        --> CTTCAACATTCGTTGTTTGGTCAT--GGTCATCTTTGGGAGGTACCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- CTTCAACATTCGTTGTT-GGTCAT--GGTCATCTTTGGGAGGTACCATCT
EV542225       <-- CTTCAACATTCGTTGTTTGGTCAT--GGTCATCTTTGGGAGGTACCATCT
EX766459       <-- CTTCAACATTCGTTGTTTGGTCATATGGTCATCTTTGGGAGGTACCATCT
FD568054       <-- CTTCAACATTCGTTGTT-GGTCAT--GGTCATCTTCGGGAGGTACCATCT
FD937455       <-- CTTCAACATTCGTTGTTTGGTCAT--GGTCATCTTTGGGAGGTACCATCT
EX762110       --> CTTCAACATTCGTTGTTTGGTCATATGGTCATCTTTGGGAGGTACCATCT
FD941929       --> CTTCAACATTCGTTGTTTGGTCAT--GGTCATCTTTGGGAGGTACCATCT

               651    -    701
UN10392        --> TCCTCAGGGTTTACAATTGTGAATTCAGGTTTGAAACTGAGAAGTTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- TCCTCAGGGTTTACAATTGTGAATTCAGGTTTGAAACTGAGAAGTTTCTG  Raphanus sativus var. oleiformis
EV542225       <-- TCCTCAGGGTTTACAATTGTGAATTCAGGTTTGAAACTGGGAAGTTTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX766459       <-- TCCTCAGGGTTTACAATTGTGAATTCAGGTTTGAAACTGGGAAGTTTGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568054       <-- TCCTCAGGGTTTACAATTGTGAATTCAGGTTTGAGACTGAGAAGTTTCTG  Raphanus sativus var. oleiformis
FD937455       <-- TCCTCAGGGTTTACAATTGTGAATTCAGGTTTGAAACTGAGAAGTTTCTG  Raphanus sativus var. oleiformis
EX762110       --> TCCTCAGGGTTTACAATTGTGAATTCAGGTTTGAAACTGGGAAGTTTGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941929       --> TCCTCAGGGTTTACAATTGTGAATTCAGGTTTGAAACTGAGAAGTTTCTG  Raphanus sativus var. oleiformis

               701    -    751
UN10392        --> TTTTCATTTCAGTTTATAGCTATTGTTTTATGCGCAACGAGTTTCATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- TTTTCATTTCAGTTTATAGCTATTGTTTAATGCGCAACGAGTTTCATTTA
EV542225       <-- TTTTCATTTCAGTTTATAGCTATTGTTTTATGCGCAACGAGTTTCATTTA
EX766459       <-- GTTTCATTTCAGTTTATAGCTATTGTTTTATGCACAACGAGTTTCATTTA
FD568054       <-- TTTTCATTTCAGTTTATAGCTATTGTTTAATGCGCAACGAGTTTCATTTA
FD937455       <-- TTTTCATTTCAGTTTATAGCTATTGTTTTATGCGCAACGAGTTTCATTTA
EX762110       --> GTTTCATTTCAGTTTATAGCTATTGTTTTATGCACAACGAGTTTCATTTA
FD941929       --> TTTTCATTTCAGTTTATAGCTATTGTTTTATGCGCAACGAGTTTCATTTA

               751    -    801
UN10392        --> TTTAATTTAAATAATCAGCGAGCAATGCTGATTTGCATGTTACACAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- TTTAATTTAAATAATCAGCGAGCAATGCTGATTTGCATGTTA........
EV542225       <-- TTTAATTTAAATAATCAGCGAGCAATGCTGATTTGCATGTTTCACAATTG
EX766459       <-- TTTAATTTAAATAATCAGCGAGCAATGCTGATTTGCATGTTtaaac....
FD568054       <-- TTTAATTTAAATAATCAGCGAGCAATGCTGATTTGCATGTTACACAATTG
FD937455       <-- TTTAATTTAAATAATCAGCGAGCAATGCTGATTTGCATGTTACACAATTG
EX762110       --> TTTAATTTAAATAATCAGCGAGCAATGCTGATTTGCATGTTtaaacaaaa
FD941929       --> TTTAATTTAAATAATCAGCGAGCAATGCTGATTTGCATGTTACACAATTG

               801    -    851
UN10392        --> GCACTTGTTCATCCTGGTGTTTTGTATTTTCTGTACTTGTGTTAATCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- ..................................................
EV542225       <-- GCACTTGTTCACCCTGGTGTTTTGTATTTTCTGTACTTGTGTTAATCTAT
EX766459       <-- ..................................................
FD568054       <-- GCACTTGTTCATCCTGGTGTTTTGTATTTTCTGTACTTGTGTTAATCTCT
FD937455       <-- GCACTTGTTCATCCTGGTGTTTTGTATTTTCTGTACTTGTGTTAATCTCT
EX762110       --> aaa...............................................
FD941929       --> GCACTTGTTCATCCTGGTGTTTTGTATTTTCTGTACTTGTGTTAATCTCT

               851    -    901
UN10392        --> TT-ATCTGTACTTTGTAGCGAAGTTACTTTCTACACATCATATCTTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- ..................................................
EV542225       <-- TT-ATCTGTACTTTGTAGCGAAGTTACTTTCTACACATCATATCTTTCTG
EX766459       <-- ..................................................
FD568054       <-- CT-ATCTGTACTTTGTAGCTAAATTACTTTCTACACATCATATCTT-CTG
FD937455       <-- TTTATCTGTACTTTGTAGCGAAGTTACTTTCTACACATC...........
EX762110       --> ..................................................
FD941929       --> TT-ATCTGTACTTTGTAGC...............................

               901    -    951
UN10392        --> TTGTTGTTTTCAGAATTGTTAATGTGACTTTAATCAATTGGTTGGTATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX892666       <-- ..................................................
EV542225       <-- TTGTTGTTTTCAGAATTGTTAATGTGACTTTAATC...............
EX766459       <-- ..................................................
FD568054       <-- TTGTTGTTTTCAGAATTGTTAATGTGACTTTAATCAATTGGTTGGTATTA
FD937455       <-- ..................................................
EX762110       --> ..................................................
FD941929       --> ..................................................

               951    -   1001
UN10392        --> CTTTTTTTCTTT
                   ~~~~~~~~~~~~
EX892666       <-- ............
EV542225       <-- ............
EX766459       <-- ............
FD568054       <-- CTTTTTTTCTTT
FD937455       <-- ............
EX762110       --> ............
FD941929       --> ............