1      -     51
UN10399        --> GGATCCCAGAAACTCCTCATCTCAAATCTCAAAAACCTAATTCTCCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- GGATCCCAGAAACTCCTCATCTCAAATCTCAAAAACCTAATTCTCCTCCA
EW718437       <-- ..................................................
EW718699       <-- ..................................................
FD942972       <-- ..................................................
FD945192       <-- ..................................................
EX887514       --> GGATCCCAGAAACTCCTCATCTCAAATCTCAAAAACCTAATTCTCCTCCA
FD946137       --> ................ggATCTCAAATCTCAAAAACCTAATTCTCCTCCA
FD981140       --> ..................................................
EW713733       --> ..................................................
EW713732       --> ..................................................
FD946948       --> ..................................................
FD949559       --> ..................................................
FD979183       --> ..................................................

               51     -    101
UN10399        --> CTCCCAAAAACAAGAATCAAAGATGGCACCAAAGGCAGGAAAGAAGCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- CTCCCAAAAACAAGAATCAAAGATGGCACCAAAGGCAGGAAAGAAGCCAG
EW718437       <-- ..................................................
EW718699       <-- ..................................................
FD942972       <-- ..................................................
FD945192       <-- ..................................................
EX887514       --> CTCCCAAAAACAAGAATCAAAGATGGCACCAAAGGCAGGAAAGAAGCCAG
FD946137       --> CTCCCAAAAACAAGAATCAAAGATGGCACCAAAGGCAGGAAAGAAGCCAG
FD981140       --> ..................................................
EW713733       --> ..................................................
EW713732       --> ..................................................
FD946948       --> ..................................................
FD949559       --> ..................................................
FD979183       --> ..................................................

               101    -    151
UN10399        --> CAGAGAAGAAACCCGCCGCCGCCGCCGCTGAGAAGCCAGCTGAGGAGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- CAGAGAAGAAACCCGCCGCCGCCGCCGCTGAGAAGCCAGCTGAGGAGGTC
EW718437       <-- ..................................................
EW718699       <-- ..................................................
FD942972       <-- ..................................................
FD945192       <-- ..................................................
EX887514       --> CAGAGAAGAAACCCGCCGCCGCCGCCGCTGAGAAGCCAGCTGAGGAGGTC
FD946137       --> CAGAGAAGAAACCCGCCGCCGCCGCCGCTGAGAAGCCAGCTGAGGAGGTC
FD981140       --> ..................................................
EW713733       --> ..................................................
EW713732       --> ..................................................
FD946948       --> ..................................................
FD949559       --> ..................................................
FD979183       --> ..................................................

               151    -    201
UN10399        --> GCCGAGAAAGCCCCGGCGGAGAAGAAGCCAAAGGCCGGGAAGAAGCTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- GCCGAGAAAGCCCCGGCGGAGAAGAAGCCAAAGGCCGGGAAGAAGCTCCC
EW718437       <-- ..................................................
EW718699       <-- ..................................................
FD942972       <-- ..................................................
FD945192       <-- ..................................................
EX887514       --> GCCGAGAAAGCCCCGGCGGAGAAGAAGCCAAAGGCCGGGAAGAAGCTCCC
FD946137       --> GCCGAGAAAGCCCCGGCGGAGAAGAAGCCAAAGGCCGGGAAGAAGCTCCC
FD981140       --> ..................................................
EW713733       --> ..................................................
EW713732       --> ..................................................
FD946948       --> ..................................................
FD949559       --> ..................................................
FD979183       --> ..................................................

               201    -    251
UN10399        --> GAAGGAGGCCGGGGCCATCGACAAGAAGAAGAAGCGGAACAAGAAGAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- GAAGGAGGCCGGGGCCATCGACAAGAAGAAGAAGCGGAACAAGAAGAGCA
EW718437       <-- .........................................gGAAGAGCA
EW718699       <-- .........................................gGAAGAGCA
FD942972       <-- ..................................................
FD945192       <-- ..................................................
EX887514       --> GAAGGAGGCCGGGGCCATCGACAAGAAGAAGAAGCGGAACAAGAAGAGCA
FD946137       --> GAAGGAGGCCGGGGCCATCGACAAGAAGAAGAAGCGGAACAAGAAGAGCA
FD981140       --> ..............................GAAGCGGAACAAGAAGAGCA
EW713733       --> ......................................ggggGAAGAGCA
EW713732       --> ..................................................
FD946948       --> ..................................................
FD949559       --> ..................................................
FD979183       --> ..................................................

               251    -    301
UN10399        --> TCGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAACAGGTCCACCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- TCGAGACTTACA......................................
EW718437       <-- TCGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAACAGGTCCACCCG
EW718699       <-- TCGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAACAGGTCCACCCG
FD942972       <-- ..................................................
FD945192       <-- ..................................................
EX887514       --> TCGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAACAGGTCCACCCG
FD946137       --> TCGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAACAGGTCCACCCG
FD981140       --> TCGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAACAGGTCCACCCG
EW713733       --> TCGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAACAGGTCCACCCG
EW713732       --> .................................TGAAACAGGTCCACCCG
FD946948       --> ..................................................
FD949559       --> ..................................................
FD979183       --> ..................................................

               301    -    351
UN10399        --> GTCATCGGGATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- ..................................................
EW718437       <-- GTCATCGGGATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAA
EW718699       <-- GTCATCGGGATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAA
FD942972       <-- .................................ATGAACAGCTTCATCAA
FD945192       <-- ..................................................
EX887514       --> GACATCGGGATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAA
FD946137       --> GACATCGGGATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAA
FD981140       --> GACATCGGGATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAA
EW713733       --> GTCATCGGGATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAA
EW713732       --> GTCATCGGGATCTCGAGCAAGGCCATGGGGATCATGAACAGCTTCATCAA
FD946948       --> .................................ATGAACAGCTTCATCAA
FD949559       --> ..................................gggACAGCTTCATCAA
FD979183       --> ..................................................

               351    -    401
UN10399        --> CGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCCAAGCTCGCTAGGTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- ..................................................
EW718437       <-- CGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCCAAGCTCGCTAGGTACA
EW718699       <-- CGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCCAAGCTCGCTAGGTACA
FD942972       <-- CGACATCTTCGAGAAGCTCGCCCAGGCGGCCTCCAAGCTCGCTAGGTACA
FD945192       <-- ..................................................
EX887514       --> CGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCCAAGCTCGCTAGGTACA
FD946137       --> CGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCCAAGCTCGCTAGGTACA
FD981140       --> CGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCCAAGCTCGCTAGGTACA
EW713733       --> CGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCCAAGCTCGCTAGGTACA
EW713732       --> CGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCCAAGCTCGCTAGGTACA
FD946948       --> CGACATCTTCGAGAAGCTCGCCCAGGCGGCCTCCAAGCTCGCTAGGTACA
FD949559       --> CGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCCAAGCTCGCTAGGTACA
FD979183       --> ..................................................

               401    -    451
UN10399        --> ACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- ..................................................
EW718437       <-- ACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
EW718699       <-- ACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
FD942972       <-- ACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
FD945192       <-- ..................................................
EX887514       --> ACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
FD946137       --> ACAAGAGGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
FD981140       --> ACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
EW713733       --> ACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
EW713732       --> ACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
FD946948       --> ACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
FD949559       --> ACAAGAAGCCGACCATCACCTCGAGGGAGATCCAGACCGCTGTCAGGCTT
FD979183       --> ..................................................

               451    -    501
UN10399        --> GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- ..................................................
EW718437       <-- GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
EW718699       <-- GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
FD942972       <-- GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
FD945192       <-- ................................................GC
EX887514       --> GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
FD946137       --> GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
FD981140       --> GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
EW713733       --> GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
EW713732       --> GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
FD946948       --> GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
FD949559       --> GTTCTGCCCGGGGAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC
FD979183       --> ............GAGCTCGCTAAGCACGCCGTCTCTGAGGGCACTAAGGC

               501    -    551
UN10399        --> TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- ..................................................
EW718437       <-- TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA
EW718699       <-- TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA
FD942972       <-- TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA
FD945192       <-- TGTTATTAAGTTTACTAGCTCTTGAATCGTGCCGTGTTGGGTTTGGCTTA
EX887514       --> TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA
FD946137       --> TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA
FD981140       --> TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA
EW713733       --> TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA
EW713732       --> TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA
FD946948       --> TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA
FD949559       --> TGTTACTAAGTTTACTAGCTCTTGAATCGTGCCGTGTTGGGTTTGGCTTA
FD979183       --> TGTTACTAAGTTTACTAGCTCTTGAATCGTGTCGTGTTGGGTTTGGCTTA

               551    -    601
UN10399        --> GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- ..................................................
EW718437       <-- GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
EW718699       <-- GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
FD942972       <-- GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
FD945192       <-- GGGATCTATATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
EX887514       --> GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
FD946137       --> GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
FD981140       --> GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
EW713733       --> GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
EW713732       --> GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
FD946948       --> GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
FD949559       --> GGGATCTATATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT
FD979183       --> GGGATCTAGATCTGGTCGCTTTTGGTTTTTATCTACTAAGAAAAAGTCGT

               601    -    651
UN10399        --> ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTGGTTTGTAATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- ..................................................
EW718437       <-- ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTGGTTTGTAATTGT
EW718699       <-- ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTGGTTTGTAATTGT
FD942972       <-- ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTGGTTTGTAATTGT
FD945192       <-- ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTGGTTTGTAATTGT
EX887514       --> ATTGGTTATGCTTTATCTAGTTTTTT---AATGATTTG............
FD946137       --> ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTGGTTTGTAATTGT
FD981140       --> ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTG............
EW713733       --> ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTGGTTTGTAATTGT
EW713732       --> ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTGGTTTGTAATTGT
FD946948       --> ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTGGTTTGTAATTGT
FD949559       --> ATTGGTTATGCTTTATCTAGTTTTTTTT-AATGATTTGGTTTGTAATTGT
FD979183       --> ATTGGTTATGCTTTATCTAGTTTTTTTTTAATGATTTGGTTTGTAATTGT

               651    -    701
UN10399        --> CGGAAGAACATATGTTATGGTTTTAATGAATCTCAATCCCTTTTGTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX891651       <-- ..................................................  Raphanus sativus var. oleiformis
EW718437       <-- CGGAAGAACATATGTTATGGTTTTAATGAATCTCAATCCCTCTTGTTC..  Raphanus sativus var. oleiformis
EW718699       <-- CGGAAGAACATATGTTATGGTTTTAATGAATCTCAATCCCTCTTGTTC..  Raphanus sativus var. oleiformis
FD942972       <-- CGGAAGAACATATGTTATGGTTTTAATGAATCTCAATCCCTTTTGTTCAA  Raphanus sativus cv Early Scarlet Globe
FD945192       <-- CGGA..............................................  Raphanus sativus cv Early Scarlet Globe
EX887514       --> ..................................................  Raphanus sativus var. oleiformis
FD946137       --> CGGAAGAACATATGTTATGGTTTTAATGAATCTCAATCCCTTTTG.....  Raphanus sativus cv Early Scarlet Globe
FD981140       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW713733       --> CGGAAGAACATATGTTATGGTTTTAATGAATCTCAATCCCTCTTGTTC..  Raphanus sativus var. oleiformis
EW713732       --> CGGAAGAACATATGTTATGGTTTTAATGAATCTCAATCCCTCTTGTTC..  Raphanus sativus var. oleiformis
FD946948       --> CGGAAGAACATATGTTATGGTTTTAATGAATCTCAATCCCTTTTGTTCAA  Raphanus sativus cv Early Scarlet Globe
FD949559       --> CGGAAGAACATATGTTATGGTTTTAATGAATCTCAATCCCTTTTGTTC..  Raphanus sativus cv Early Scarlet Globe
FD979183       --> CGGAAGAACATATGTTATGGTTTTAATGAATCTCAATCCCTTTTGTTC..  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN10399        --> TAATTGTTTCG
                   ~~~~~~~~~~~
EX891651       <-- ...........
EW718437       <-- ...........
EW718699       <-- ...........
FD942972       <-- TAATTGTTTCG
FD945192       <-- ...........
EX887514       --> ...........
FD946137       --> ...........
FD981140       --> ...........
EW713733       --> ...........
EW713732       --> ...........
FD946948       --> TAATTGTTTCG
FD949559       --> ...........
FD979183       --> ...........