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Alignment for radish unigene UN10544

               1      -     51
UN10544        --> ATAAATTCGTTTTACCATTTAGCAAAGTAGTGATAAGTACGAACAAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ...................................AGTACGAACAAATGT
FY440148       <-- ..................................................
EY931359       <-- ..................................................
FY447572       <-- ..................................................
FD560625       <-- ..................................................
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> ATAAATTCGTTTTACCATTTAGCAAAGTAGTGATAAGTACGAACAAATGT
FY439916       --> .aAAATTCGTTTTAC-ATTTAGCAAAGTAGTGATAAGTACGAACAAATGT
FY439987       --> ....................AGCAAAGTAGTGATAAGTACGAACAAATGT
EY934377       --> ...............................GATAAGTACGAACAAATGT
FD529334       --> ...................................AGTACGAACAAATGT
EW730854       --> .......................................ctAACAAATGT
EY919604       --> ..................................................
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> ..................................................
FD537180       --> ..................................................

               51     -    101
UN10544        --> GTTTATCAAATACATTTTAATAAGAACAAACACGGC-TTTGATGACATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- GTTTATCAAATACATTTTAATAAGAACAAACACGGC-TTTGATGACATGT
FY440148       <-- ..................................................
EY931359       <-- ..................................................
FY447572       <-- ..................................................
FD560625       <-- ..................................................
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> GTTTATCAAATACATTTTAATAAGAACAAACACGGC-TTTGATGACATGT
FY439916       --> GTTTATCAAATACATTT-AATAAGAACAAACACGGCGTTTGATGACATGT
FY439987       --> GTTTATCAAATACATTT-AATAAGAACAAACACGGC-TTTGATGACATGT
EY934377       --> GTTTATCAAATACATTTAAATAAGAACAAACACGGC-TTTGATGACATGT
FD529334       --> GTTTATCAAATACATTTTAATAAAAACAAACACGGC-TTTGATGACATGT
EW730854       --> GTTTATCAAATACATTTAAATAAGAACAAACACGGC-TTTGATGACATGT
EY919604       --> ....ATCAAATACATTTTAATAAGAACAAACACGGC-TTTGATGACACGT
FD969282       --> ....ATCAAATACATTTTAATAAGAACAAAGA-GGC-TTTGATGACATGT
FD564998       --> .................................GGC-TTTGATGACATGT
EX768716       --> ..................................................
FD537180       --> ..................................................

               101    -    151
UN10544        --> CAATTCCTTCTCCATG--ACAAACAACATAAACTAAATAAAATGCGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- CAATTCCTTCTCCATG--ACAAACAACATAAACTAAATAAAATGCGAGAA
FY440148       <-- ..................................................
EY931359       <-- ..................................................
FY447572       <-- ..................................................
FD560625       <-- ..................................................
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> CAATTCCTTCTCCATG--ACAAACAACATAAACTAAATAAAATGCGAGAA
FY439916       --> CAATTCCTTCTCCATG--ACAAACAACATAAACTAAATAAAATGCGAGAA
FY439987       --> CAATTCCTTCTCCATG--ACAAACAACATAAACTAAATAAAATGCGAGAA
EY934377       --> CAATTCCTTCTCCATA--ACAAACAACATAAACTAAATAAAATGCGAGAA
FD529334       --> CAATTCCTTCCCCATG--ACAAACAACATAAACTAAATAAAATGCGAGAA
EW730854       --> CAATTCCTTCTCCATG--ACAAACAACATAAACTAAATAAAATGCGAGAA
EY919604       --> CAATTCCTTCTCCATG--ACAAACAACATAAACTAAATAAAATGCGAGAA
FD969282       --> CAATTCCTTCTCCATGTGACAAACAACATAAACTAAATAAAATGCGAGAA
FD564998       --> CAATTCCTTCTCCATG--ACAAACAACATAAACTAAATAAAATGCGAGAA
EX768716       --> ..................................................
FD537180       --> ..................................................

               151    -    201
UN10544        --> AAGAACAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- AAGAACAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
FY440148       <-- ..................................................
EY931359       <-- ..................................................
FY447572       <-- ..................................................
FD560625       <-- ..................................................
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> AAGAACAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
FY439916       --> AAGAACAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
FY439987       --> AAGAACAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
EY934377       --> AAGAACAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
FD529334       --> AAAAACAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
EW730854       --> AAGAACAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
EY919604       --> AAGAACAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
FD969282       --> AAGAGCAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
FD564998       --> AAGAACAAAACCCAGCCCCGACACACTTATATATCATGACCCACATTTGT
EX768716       --> .cGAACAAAACCCAGTCCCGACACACTTATATATCATGACCCACATTTGT
FD537180       --> ..................................................

               201    -    251
UN10544        --> CCGAAGTAGCAGTTTTCATGTGAGCTTAAGAAAAAAAGCAGTTAGTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- CCGAAGTAGCAGTTTTCATGTGAGCTTAAGAAAAAAAGCAGTTAGTAACA
FY440148       <-- ..................................................
EY931359       <-- ..................................................
FY447572       <-- ..................................................
FD560625       <-- ..................................................
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> CCGAAGTAGCAGTTTTCATGTGAGCTTAAGAAAAAAAGCAGTTAGTAACA
FY439916       --> CCGAAGTAGCAGTTTTCATGTGAGCTTAA-AAAAAAAGCAGTTAGTAACA
FY439987       --> CCGAAGTAGCAGTTTTCATGTGAGCTTAA-AAAAAAAGCAGTTAGTAACA
EY934377       --> CCGAAGTAGCAGTTTTCATGTGAGCTTAAGAAAAAAAGCAGTTAGTAACA
FD529334       --> CCGAAGTAGCAGTTTTCATGTGAGCTTAAAAAAAAAAGCAGTTAGTAACA
EW730854       --> CCGAAGTAGCAGTTTTCATGTGAGCTTAAGAAAAAAAGCAGTTAGTAACA
EY919604       --> CCGAAGTAACAGTTTTCATGTGAGCTTAAGAAAAAAAGCAGTTAGTAACA
FD969282       --> CCGAAGTAGCAGTTTTCATGTGAGCTTAAGAAAAAAAGCAGTTAGTAACA
FD564998       --> CCGAAGTAGCAGTTTTCATGTGAGCTTAAGAAAAAAAGCAGTTAGTAACA
EX768716       --> CCGAAGTAGCAGTTTTCATGTGAGCTTAAGAAAAAAAGCAGTTAGTAACA
FD537180       --> .............TTTCATGTGAGCTTAAGAAAAAAAGCAGTTAGTAACA

               251    -    301
UN10544        --> ACTTTGAAGACGTAAGAGATAAGACACACCTGAAAAATATCAACTACTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ACTTTGAAGACGTAAGAGATAAGACACACCTGAAAAATATCAACTACTAC
FY440148       <-- ..................................................
EY931359       <-- ..................................................
FY447572       <-- ..................................................
FD560625       <-- ..................................................
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> ACTTTGAAGACGTAAGAGATAAGACACACCTGAAAAATATCAACTACTAC
FY439916       --> ACTTTGAAGACGTAAGAGATAAGACACACCTGAAAAATATCAACTGCTAC
FY439987       --> ACTTTGAAGACGTAAGAGATAAGACACACCTGAAAAATATCAACTGCTAC
EY934377       --> ACTTTGAAGACGTAAGAGATAAGACACACCTGAAAAATATCAACTACTAC
FD529334       --> ACTTTGAAGACGTAAGAAATAAAACACACCTGAAAAATATCAACTACTAC
EW730854       --> ACTTTGAAGACGTAAGAGACAAGACACACCTGAAAAATATCAACTACTAC
EY919604       --> ACTTTGAAGACGTAAGAGATAAGACACACCTGAAAAATATCAACTACTAC
FD969282       --> ACTTTGAAGACGTAAGAGATAAGACACACCTGAAAAATATCAACTACTAC
FD564998       --> ACTTTGAAGACGTAAGAGATAAGACACACCTGAAAAATATCAACTACTAC
EX768716       --> ACTTTGAAGACGTAAGAGATAAGACACACCTGAAAAATATCAACTACTAC
FD537180       --> ACTTTGAAGACGTAAGAAATAAGACACACCTGAAAAATATCAACTACTAC

               301    -    351
UN10544        --> TACTACTCCCCTTATCTTTTTCTTTCGTGAAGCTGAGTAGATTTGCCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- TACTACTCCCCTTATCTTTTTCTTTCGTGAAGCTGAGTAGATTTGCCTAC
FY440148       <-- ..................................................
EY931359       <-- ..................................................
FY447572       <-- ..................................................
FD560625       <-- ..................................................
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> TACTACTCTTCTTATCTTTTTCTTTCGTGAAGCTGAGTAGATTTGCCTAC
FY439916       --> TACTACTCCCCTTATCTTTTTCTT-CGTGAAGCTGAGTAGATTTGCCTAC
FY439987       --> TACTACTCCCCTTATCTTTTTCTT-CGTGAAGCTGAGTAGATTTGCCTAC
EY934377       --> TACTACTCCCCTTATCTTTTTCTTTCGTGAAGCTGAGTAGACTTGCCTAC
FD529334       --> TACTACTCCCCTTATCTTTTTCTTTCGTGAAGCTGAATAAATTTGCCTAC
EW730854       --> TACTACTCCCCTTATCTTTTTCTTTCGTGAAGCTGAGTAGATTTGCCTAC
EY919604       --> TACTACTCTTCTTATCTTTTTCTTTCGTGAAGCTGAGTAGATTTGCCTAC
FD969282       --> TACTACTCCCCTTATCTTTTTCTTTCGTGAAGCTGACTAGATTTGTCTAC
FD564998       --> TACT---CCCCTTATCTTTTTCTTTCGTGAAGCTGGGTAGATTTGCCTAC
EX768716       --> TACTACTCTTCTTATCTTTTTCTTTCGTGAAGCTGAGTAGATTTGCCTAC
FD537180       --> TACTACTCCCCTTATCTTTTTCTTTCGTGAAGCTGACTAGATTTGCCTAC

               351    -    401
UN10544        --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
FY440148       <-- ..................................................
EY931359       <-- ..................................................
FY447572       <-- ..................................................
FD560625       <-- ..................................................
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
FY439916       --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
FY439987       --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
EY934377       --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
FD529334       --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
EW730854       --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
EY919604       --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
FD969282       --> ATCTTCTCCACGCATAACTTCTTCGTCAGGACCATATTTTAATTTACTAA
FD564998       --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
EX768716       --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA
FD537180       --> ATCTTCTCCACACATAACTTCTTCATCAGGACCATATTTTAATTTACTAA

               401    -    451
UN10544        --> TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
FY440148       <-- ..................................................
EY931359       <-- ..................................................
FY447572       <-- ..................................................
FD560625       <-- ..................................................
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
FY439916       --> TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
FY439987       --> TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
EY934377       --> TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
FD529334       --> TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
EW730854       --> TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
EY919604       --> TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
FD969282       --> TCGGACTTGATACCTCCGTTCTGCTTATTGCTCTTCTTGGACGACTCTTT
FD564998       --> TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
EX768716       --> TCGGACTTGATACCTCCGTTCTGCTTGTTGCTCTTCTTGGACGACTCTTT
FD537180       --> TCGGACTTGATAACTCCGTTCTGCTTGTTGCTCTTCGTGGACGACTCTTT

               451    -    501
UN10544        --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
FY440148       <-- ...........................TCGGTAACCCT-GTCAGTTTCCA
EY931359       <-- ..............................GTAACCCTTGTCAGTT-CCA
FY447572       <-- ..................................................
FD560625       <-- ..................................................
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
FY439916       --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
FY439987       --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
EY934377       --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
FD529334       --> GATCTGCTCAAAAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
EW730854       --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
EY919604       --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
FD969282       --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
FD564998       --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA
EX768716       --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAGCCCTTGTCAGTT-CCA
FD537180       --> GATCTGCTCAAGAAGCTTCTTTTGGAATCGGTAACCCTTGTCAGTT-CCA

               501    -    551
UN10544        --> TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- TAAATGTAGTCACAATAc................................
FY440148       <-- TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
EY931359       <-- TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
FY447572       <-- TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
FD560625       <-- ..........................................TGGCTTTG
FD973630       <-- ..................................................
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
FY439916       --> TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
FY439987       --> TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
EY934377       --> TAAATGTAGTCGCAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
FD529334       --> TAAATGTAGTCACA....................................
EW730854       --> TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
EY919604       --> TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
FD969282       --> TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
FD564998       --> TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
EX768716       --> TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG
FD537180       --> TAAATGTAGTCACAATAAGTAAAAACTGAAGCGAAGTTGCTGTGGCTTTG

               551    -    601
UN10544        --> TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCACCACCATAGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY440148       <-- TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCCCCACCATAGAAAG  Raphanus sativus cv GSK3-1
EY931359       <-- TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCACCACCATAGAAAG  Raphanus sativus var. oleiformis
FY447572       <-- TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCCCCACCATAGAAAG  Raphanus sativus cv GSK3-1
FD560625       <-- TCCTCCAACGTAGTGATGGTAGTCATGGTAT-CAGCACCACCATAGAAAG  Raphanus sativus var. oleiformis
FD973630       <-- .....................GTCATG-TATTCAGCACCACCATAGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725578       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX764884       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770029       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD549567       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY923863       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY938186       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD545616       --> TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCACCACCATAGAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY439916       --> TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCCCCAC.........  Raphanus sativus cv GSK3-1
FY439987       --> TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCCCCAC.........  Raphanus sativus cv GSK3-1
EY934377       --> TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCACCACCATAGAAAG  Raphanus sativus cv Early Scarlet Globe
FD529334       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW730854       --> TCCTCCAACGTAGTAATGGTAGTCATGGTATTCAGCACCACCATAGAAAG  Raphanus sativus cv Early Scarlet Globe
EY919604       --> TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCACCACCATAGAAAG  Raphanus raphanistrum subsp. landra
FD969282       --> TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCACCACCATAGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD564998       --> TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCACCACCATAGAAAG  Raphanus sativus var. oleiformis
EX768716       --> TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCACCACCATAGAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537180       --> TCCTCCAACGTAGTGATGGTAGTCATGGTATTCAGCACC...........  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN10544        --> GGATGTATTTTGTTGGACTCCATGGAAAATCATATCCACTGTGCGTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- GGATGTATTTTGTTGGACTCCATGGAAAATCATATCCACTGTGCGTCTCT
EY931359       <-- GGATGTATTTTGTTGGACTCCATGAAAAATCATATCCACTGTGCGTCTCT
FY447572       <-- GGATGTATTTTGTTGGACTCCATGGAAAATCATATCCACTGTGCGTCTCT
FD560625       <-- GGATGTATTT-GTT-GACTCCATGGAAAATCATATCCACTGTGCGTCTCT
FD973630       <-- GGATGTATTT-GTTGGACTCCATGGAAAATCATATCCACTGTGAGTCTCT
EW725578       <-- ..................................................
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> GGATGTATTTTGTTGGACTCCATGGAAAATCATGTCCACTGTGCGTCTCT
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> GGATGTATTTTGTTGGACTCCATGGAAAATCATATCCACTGTGCGTCTCT
FD529334       --> ..................................................
EW730854       --> GGATGTATTTTGTTGGACTCCATGGAAAATCATATCCACTGTGCGCCTCT
EY919604       --> GGATGTATTTTGTTGGACTCCATGGAAAATCATATCCACTGTGCGTCTCT
FD969282       --> GGATGTATTTTGTTGGACTCCATGGAAAATCATATCCACTGTGAGTCTCT
FD564998       --> GGATGTATTTTGTTGGACTCCATGGAAAATCATATCCACTGTGCGTCTCT
EX768716       --> GGATGTATTTTGTTGGACTCCATGGAAAATCATATCCACTGTGCGTCTCT
FD537180       --> ..................................................

               651    -    701
UN10544        --> ATAGCCTCAATTTGCCTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- ATAGCCTCAATTTGCCTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
EY931359       <-- ATAGCCTCAATTTGCCTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
FY447572       <-- ATAGCCTCAATTTGCCTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
FD560625       <-- ATAGC-TCAATTTGCTTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
FD973630       <-- ATAGC-TCAATT-G-CTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
EW725578       <-- .........ATTTGC-TTAAAGCTATCCACAACCAAAAGGTTATCATGTG
EX764884       <-- ..................................................
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> ATAGCCTCAATTTGCCTTAAAGCTATCCACAACCAA..............
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ATAGCCTCAATTTGCCTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
FD529334       --> ..................................................
EW730854       --> ATAGCCTCAATTTGCCTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
EY919604       --> ATAGCCTCAATTTGCCTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
FD969282       --> ATAGCCTCAATTTGCCTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
FD564998       --> ATAGCCTCAATTTGCCTTAAAGCTATCCACAACCAAAAGGTTATCATGTG
EX768716       --> ATAGCCTCAATTTGCCTTAAAGCTATCCACAGCCAAAAGGTTATCATGTG
FD537180       --> ..................................................

               701    -    751
UN10544        --> ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
EY931359       <-- ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
FY447572       <-- ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
FD560625       <-- ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
FD973630       <-- ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
EW725578       <-- ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
EX764884       <-- ............................................AGCAAC
EX770029       <-- ..................................................
FD549567       <-- ..................................................
EY923863       <-- ..................................................
EY938186       <-- ..................................................
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
FD529334       --> ..................................................
EW730854       --> ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
EY919604       --> ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
FD969282       --> ACCAGGAGCAATCGCTGGGTCCCATAAACGT...................
FD564998       --> ACCAGGAGCAATCGCTGG-TCCCATAAACGTTGGGATTCCAAGAAGCAAC
EX768716       --> ACCAGGAGCAATCGCTGG-TTCCATAAACGTTGGGATTCCAAGAAGCAAC
FD537180       --> ..................................................

               751    -    801
UN10544        --> ACTTCAGCCCAGTGTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- ACTTCAGCCCAGTGTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
EY931359       <-- ACTTCAGCCCAGTGTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
FY447572       <-- ACTTCAGCCCAGTGTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
FD560625       <-- ACTTCAGCCCAGTGTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
FD973630       <-- ACTTCAGCCCAGTGTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
EW725578       <-- ACTTCAGCCCAGTGTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
EX764884       <-- ACTTCAGCCCAGTGTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
EX770029       <-- ...........GTGTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
FD549567       <-- .............GTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
EY923863       <-- ..................................CAATAGGAGCTGTGTA
EY938186       <-- ............................................TGTGTA
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ACTTCAGCCCAGTGTGC.................................
FD529334       --> ..................................................
EW730854       --> ACTTCAGCCCAGTGTGCATAAG-TGCAGCGTA..................
EY919604       --> ACTTCAGCCCAGTGTGCATAAGGGGCAGCGTATCCAATAGGAGCTGTGTA
FD969282       --> ..................................................
FD564998       --> ACTTCAGCCCAGTGTG..................................
EX768716       --> ACTTCAGCCCAGTGTGCATAAGGTGCAGCGTATCCAATAGGAGCTGTGTA
FD537180       --> ..................................................

               801    -    851
UN10544        --> CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
EY931359       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
FY447572       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
FD560625       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
FD973630       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
EW725578       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
EX764884       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
EX770029       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCCCACTTACTGTGGAAA
FD549567       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
EY923863       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
EY938186       <-- CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ..................................................
FD529334       --> ..................................................
EW730854       --> ..................................................
EY919604       --> CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC--CTTACTGTGGAAA
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> CTCGTGATGAACGCGATGAATGTTCTCGTATCCCC-ACTTACTGTGGAAA
FD537180       --> ..................................................

               851    -    901
UN10544        --> AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
EY931359       <-- AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
FY447572       <-- AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
FD560625       <-- AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
FD973630       <-- AATCTGTGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
EW725578       <-- AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
EX764884       <-- AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
EX770029       <-- AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
FD549567       <-- AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
EY923863       <-- AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
EY938186       <-- AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ..................................................
FD529334       --> ..................................................
EW730854       --> ..................................................
EY919604       --> A-TCTATGTACCCAATAGTTTGTGTAGTCTTCTATCA-G-AGTAGACGAc
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> AATCTATGTACCCAATAGTTTGTGTAGTCTTCTATCAAGAAGTAGACGAA
FD537180       --> ..................................................

               901    -    951
UN10544        --> CAACTGTGGCAGCATCTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY440148       <-- CAACTGTGGCAGCATCTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA  Raphanus sativus cv GSK3-1
EY931359       <-- CAACTGTGGCAGCATCTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA  Raphanus sativus var. oleiformis
FY447572       <-- CAACTGTGGCAGCATCTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA  Raphanus sativus cv GSK3-1
FD560625       <-- CAACTGAGGCAGCATCTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA  Raphanus sativus var. oleiformis
FD973630       <-- CAACTGTGGCAGCATCTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725578       <-- CAACTGTGGCAGCATCTCTGAAAACGTTGGTAATGGTAAACCAGATCGTA  Raphanus sativus cv Early Scarlet Globe
EX764884       <-- CAACTGTGGCAGCATTTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770029       <-- CAACTGTGGCAGCATTTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA  Raphanus raphanistrum subsp. landra
FD549567       <-- CAACTGTGGCAGCATTTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY923863       <-- CAACTGTGGCAGTATTTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA  Raphanus raphanistrum subsp. landra
EY938186       <-- CAACTGTGGCAGCATCTCTGAAAATGTTGGTAATGGTAAACCAGATCGTA  Raphanus sativus cv Early Scarlet Globe
FD545616       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY439916       --> ..................................................  Raphanus sativus cv GSK3-1
FY439987       --> ..................................................  Raphanus sativus cv GSK3-1
EY934377       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD529334       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW730854       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY919604       --> actgtg............................................  Raphanus raphanistrum subsp. landra
FD969282       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD564998       --> ..................................................  Raphanus sativus var. oleiformis
EX768716       --> CAACTGTGGCAGCATTTCTGAAAATGTTGGTA-TGGTAAACCAGATCGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537180       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               951    -   1001
UN10544        --> TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
EY931359       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
FY447572       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
FD560625       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
FD973630       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
EW725578       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
EX764884       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
EX770029       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
FD549567       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
EY923863       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
EY938186       <-- TCCCAATCATCTGAATGGAAGGATAAGAAACGAGTTGTAATGGACCAACG
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ..................................................
FD529334       --> ..................................................
EW730854       --> ..................................................
EY919604       --> ..................................................
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> TCC-AATCATCTG.....................................
FD537180       --> ..................................................

               1001   -   1051
UN10544        --> ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
EY931359       <-- ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
FY447572       <-- ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
FD560625       <-- ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
FD973630       <-- ACGAGAATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
EW725578       <-- ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
EX764884       <-- ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
EX770029       <-- ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
FD549567       <-- ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
EY923863       <-- ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
EY938186       <-- ACGAGGATGAACATCTTCATGACGTCTTTGTAACATCCGAACATGTCGGA
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ..................................................
FD529334       --> ..................................................
EW730854       --> ..................................................
EY919604       --> ..................................................
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> ..................................................
FD537180       --> ..................................................

               1051   -   1101
UN10544        --> CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
EY931359       <-- CGAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
FY447572       <-- CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
FD560625       <-- CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
FD973630       <-- CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
EW725578       <-- CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
EX764884       <-- CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
EX770029       <-- CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
FD549567       <-- CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
EY923863       <-- CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
EY938186       <-- CAAGGAGTAGTTTACTTTGGGTTGGATCTTGTACCGGTCGAACCACCCAG
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ..................................................
FD529334       --> ..................................................
EW730854       --> ..................................................
EY919604       --> ..................................................
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> ..................................................
FD537180       --> ..................................................

               1101   -   1151
UN10544        --> AAGCGGATCGAGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- AAGCGGATCGAGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
EY931359       <-- AAGCGGATCGAGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
FY447572       <-- AAGCGGATCGAGCCGGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
FD560625       <-- AAGCGGATCGAGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
FD973630       <-- AAGCGGATTGAGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
EW725578       <-- AAGCGGATCGGGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
EX764884       <-- AAGCGGATCGAGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
EX770029       <-- AAGCGGATCGAGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
FD549567       <-- AAGCGGATCGAGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
EY923863       <-- AAGCGGATCGAGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
EY938186       <-- AAGCGGATCGAGCCAGCTCGACGAGAACCAGAGGGAGAGGAGCTAGAGAA
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ..................................................
FD529334       --> ..................................................
EW730854       --> ..................................................
EY919604       --> ..................................................
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> ..................................................
FD537180       --> ..................................................

               1151   -   1201
UN10544        --> AAGACGAGGAATAGGAAGAGAATGTTGTGGCAGTAGAGATAGTAGTCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- AAGACGAGGAATAGGAAGAGAATGTTGTGGCAGTAGAGATAGTAGTCGGA
EY931359       <-- AAGACGAGGAATAGGAAGAGAATGTTGc......................
FY447572       <-- AAGACGAGGAATAGGAAGAGAATGTTGTGGCAGTAGAGATAGTAGTCGGA
FD560625       <-- AAGACGAGGAATAGGAAGAGAATGTTGTGGCAGTAGAGATAGTAGTCGGA
FD973630       <-- AAGACGAGGAATAGGAAGAGAATGTTGTGGCAGTAGAGATAGTAGTCGGA
EW725578       <-- AAGACGAGGAATAGGAAGAGAATGTTGTGGCGGTAGAGATAGTAGTCGGA
EX764884       <-- AAGACGAGGAATAGGAAGAGAATGTTGTGGCAGTAGAGATAGTAGTCGGA
EX770029       <-- AAGACGAGGAATAGGAAGAGAATGTTGTGGCAGTAGAGATAGTAGTCGGA
FD549567       <-- AAGACGAGGAATAGGAAGAGAATGTTGTGGCAGTAGAGATAGTAGTCGGA
EY923863       <-- AGGACGAGGAATAGGAAGAGAATGTTGTGGCAGTAGAGATAGTAGTCGGA
EY938186       <-- AAGACGAGGAATAGGAAGAGAATGTTGTGGCAGTAGAGATAGTAGTCGGA
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ..................................................
FD529334       --> ..................................................
EW730854       --> ..................................................
EY919604       --> ..................................................
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> ..................................................
FD537180       --> ..................................................

               1201   -   1251
UN10544        --> CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
EY931359       <-- ..................................................
FY447572       <-- CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
FD560625       <-- CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
FD973630       <-- CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
EW725578       <-- CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
EX764884       <-- CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
EX770029       <-- CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
FD549567       <-- CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
EY923863       <-- CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
EY938186       <-- CTTTGTGGCGGAGTAATCGAACCAAACTGTCTCCAACCACGTGAGGTTTC
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ..................................................
FD529334       --> ..................................................
EW730854       --> ..................................................
EY919604       --> ..................................................
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> ..................................................
FD537180       --> ..................................................

               1251   -   1301
UN10544        --> TTCCGAGCGCGAAGGAAGCTTCCTCAACCGTTACGTAAGGAATCATGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- TTCCGAGCGCGAAGGAAGCTTCCTCAACCGTTACGTAAGGAATCATGATG
EY931359       <-- ..................................................
FY447572       <-- TTCCGAGCGCGAAGGAAGCTTCCTCAACCGTTACGTAAGGAATCATGATG
FD560625       <-- TTCCGAGCGCGAAGGAAGCTTCCTCAACCGTTACGTAAGGAATCATGATG
FD973630       <-- TTCCGAGCGCGAAGGAAGCTTCCTCAACCGTTACGTAAGGAATCATGATG
EW725578       <-- TTCCGAGCGCGAAGGAAGCTTCCTCGACCGTTACGTAAGGAATCATGATG
EX764884       <-- TTCCGAGCGCGAAGGAAGCTTCCTCAACCGTTACGTAAGGAATCATGATG
EX770029       <-- TTCCGAGCGCGAAGGAAGCTTCCTCAACCGTTACGTAAGGAATCATGATG
FD549567       <-- TTCCGAGCGCGAAGGAAGCTTCCTCAACCGTTACGTAAGGAATCATGATG
EY923863       <-- TTCCGAGCGCGAAGGAAGCTTCCTCAACCGTTACGTAAGGAATCATGATG
EY938186       <-- TTCCGAGCGCGAAGGAAGCTTCCTCAACCGTTACGTAAGGAATCATGATG
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ..................................................
FD529334       --> ..................................................
EW730854       --> ..................................................
EY919604       --> ..................................................
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> ..................................................
FD537180       --> ..................................................

               1301   -   1351
UN10544        --> GTAAAGTTTCTCGGTTTCTCCGGCGGGTTTGCGACGGAGATTTGCTGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY440148       <-- GTAAAGTTTCTCGGTTTCTCCGGCGGGTTgcga.................  Raphanus sativus cv GSK3-1
EY931359       <-- ..................................................  Raphanus sativus var. oleiformis
FY447572       <-- GTAAAGTTTCTCGGTTTCTCCGGCGGGTTTGCGACGGAGAATTGCTGACG  Raphanus sativus cv GSK3-1
FD560625       <-- GTAAAGTTTCTCGGTTTCTCCcct..........................  Raphanus sativus var. oleiformis
FD973630       <-- GTAAAGTTTCTCGGTTTCTCCGGCGGGTTTGCGACGGAGATTTGCTGACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725578       <-- GTAAAGTTTCTCGGTTTCTCCGGCGGGTTTGCGACGGAGATTTGCTGACG  Raphanus sativus cv Early Scarlet Globe
EX764884       <-- GTAAAGTTTCTCGGTTTCTCCGGCTGGTTTGCGACGGAGATTTGCTGACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770029       <-- GTAAAGTTTCTCGGTTTCTCCGGCTGGTTTGCGACGGAGATTTGCTGACG  Raphanus raphanistrum subsp. landra
FD549567       <-- GTAAAGTTTCTCGGTTTCTCCGGCTGGTTTGCGACGGAGATTTGCTGACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY923863       <-- GTAAAGTTTCTCGGTTTCTCCGGCTGGTTTGCGACGGAGATTTGCTGACG  Raphanus raphanistrum subsp. landra
EY938186       <-- GTAAAGTTTCTCAGTTTCTCCGGCGGGTTTGCGACGGAGATTTGCTGACG  Raphanus sativus cv Early Scarlet Globe
FD545616       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY439916       --> ..................................................  Raphanus sativus cv GSK3-1
FY439987       --> ..................................................  Raphanus sativus cv GSK3-1
EY934377       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD529334       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW730854       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY919604       --> ..................................................  Raphanus raphanistrum subsp. landra
FD969282       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD564998       --> ..................................................  Raphanus sativus var. oleiformis
EX768716       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537180       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               1351   -   1401
UN10544        --> TGGAGATCTGATGATCTGGGGAGGAGAGGTTGAGAGAGAAGAGAAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ..................................................
FY440148       <-- ..................................................
EY931359       <-- ..................................................
FY447572       <-- -GGAGATCTGATGATC..................................
FD560625       <-- ..................................................
FD973630       <-- TGGAGATCTGATGATCTGGGGAGGAGAGGTTcc.................
EW725578       <-- CGGAGATCTGATGATCTGGGGAGGAGAGGTTGggcc..............
EX764884       <-- TGGAGATCTGATGATCTGGGGAGGAGAGGTTGAGAGAGAAGAGAAGAAGA
EX770029       <-- TGGAGATCTGA.......................................
FD549567       <-- TGGAGATCTGATGATCTGGGGAGGAGAGGTTGAGAGAGAAGAGAAGAAGA
EY923863       <-- TGGAGATCTGATGATCTGGGGAcc..........................
EY938186       <-- CGGAGATCTGATGATCTGGGGAGGAGAGGTTGAGAGAGAAGAGAAGAAGA
FD545616       --> ..................................................
FY439916       --> ..................................................
FY439987       --> ..................................................
EY934377       --> ..................................................
FD529334       --> ..................................................
EW730854       --> ..................................................
EY919604       --> ..................................................
FD969282       --> ..................................................
FD564998       --> ..................................................
EX768716       --> ..................................................
FD537180       --> ..................................................

               1401   -   1451
UN10544        --> GAGTGCTTGTTTGTTATATAGTTGGCGAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533031       <-- ................................
FY440148       <-- ................................
EY931359       <-- ................................
FY447572       <-- ................................
FD560625       <-- ................................
FD973630       <-- ................................
EW725578       <-- ................................
EX764884       <-- GAGTGCTTGTTTGTTATATAGTTGGCGAATCC
EX770029       <-- ................................
FD549567       <-- GAGTGCTTGTTTGTTATATAGTTGGCGAATCC
EY923863       <-- ................................
EY938186       <-- GAGTGTTTGTTTGTTATATAGTTGGCGAATCC
FD545616       --> ................................
FY439916       --> ................................
FY439987       --> ................................
EY934377       --> ................................
FD529334       --> ................................
EW730854       --> ................................
EY919604       --> ................................
FD969282       --> ................................
FD564998       --> ................................
EX768716       --> ................................
FD537180       --> ................................