1      -     51
UN10614        --> AACGTAACAAATGAAAACAAATTTTACTAAAATATGACAAATGCAGTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- AACGTAACAAATGAAAACAAATTTTACTAAAATATGACAAATGCAGTTCA
EV526484       <-- .....AACAAATGAAAACAA-TTTTACTAAAATACGACAAATGCAGTTCA
FD568449       <-- ........AAATGAAAACAAATTTTACTAAAATATGACAAATGCAGTTCA
EV569539       <-- ..................................................
FY439757       <-- ..................................................
EW722078       <-- ..................................................
EW722077       <-- ..................................................
FY449939       <-- ..................................................
EW726188       <-- ..................................................
EV565982       <-- ..................................................
FD978728       <-- ..................................................
FD977812       --> AACGTAACAAATGAAAACAAATTTTACTAAAATATGACAAATGCAGTTCA
EY909774       --> ...GTAACAAATGAAAACAAATTTTACTAAAATATGACAAATGCAGTTCA
EV571207       --> .....AACAAATGAAAACAA-TTTTACTAAAATACGACAAATGCAGTTCA
EW726935       --> .....agCAAATGAAAACAAATTTTACTAAAATATGACAAATGCAGTTCA
EW727225       --> .....agCAAATGAAAACAAATTTTACTAAAATATGACAAATGCAGTTCA
FD974909       --> .........gATGAAAACAAATTTTACTAAAATATGACAAATGCAGTTCA
EV574061       --> ..................................................

               51     -    101
UN10614        --> TAACCATCAACCAAAATGGCGTTTTAGACAAACAAATCAAAGAAGAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- TAACCATCAACCAAAATGGCGTTTTAGACAAACAAATCAAAGAAGAGAAC
EV526484       <-- CAACCATCAACCAAAATGGCGTTTTAGACAAACAAATCAAAGAAGAGAAC
FD568449       <-- TAACCATCAACCAAAATGGCGTTTTAGACAAACAAATCAAAGAAGAGAAC
EV569539       <-- .....................................CAAAGAAGAGAAC
FY439757       <-- ..................................................
EW722078       <-- ..................................................
EW722077       <-- ..................................................
FY449939       <-- ..................................................
EW726188       <-- ..................................................
EV565982       <-- ..................................................
FD978728       <-- ..................................................
FD977812       --> TAACCATCAACCAAAATGGCGTTTTAGACAAACAAATCAAAGAAGAGAAC
EY909774       --> TAACCATCAACCAAAATGGCGTTTTAGACAAACAAATCAAAGAAGAGAAC
EV571207       --> CAACCATCAACCAAAATGGCGTTTTAGACAAACAAATCAAAGAAGAGAAC
EW726935       --> TAACCATCAACCAAAATGGCGTTTTAGACAAACAAATCAAAGAAGAGAAC
EW727225       --> TAACCATCAACCAAAATGGCGTTTTAGACAAACAAATCAAAGAAGAGAAC
FD974909       --> TAACCATCAACCAAAATGGCGTTTTAGACAAACAAATCAAAGAAGAGAAC
EV574061       --> .....................................CAAAGAAGAGAAC

               101    -    151
UN10614        --> ACATATAGTGAGAAACTTGACGAAAAAATATTCAGGATTGAAGATTATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ACATATAGTGAGAAACTTGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ACATATAGTGAGAAACATGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus raphanistrum subsp. maritimus
FD568449       <-- ACATATAGTGAGAAACTTGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- ACATATAGTGAGAAACATGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus raphanistrum subsp. landra
FY439757       <-- ..................................................  Raphanus sativus cv GSK3-1
EW722078       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- ..................................................  Raphanus sativus cv GSK3-1
EW726188       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD978728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> ACATATAGTGAGAAACTTGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> ACATATAGTGAGAAACTTGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> ACATATAGTGAGAAACATGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus raphanistrum subsp. landra
EW726935       --> ACATATAGTGAGAAACTTGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus sativus cv Early Scarlet Globe
EW727225       --> ACATATAGTGAGAAACTTGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus sativus cv Early Scarlet Globe
FD974909       --> ACATATAGTGAGAAACTTGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> ACATATAGTGAGAAACATGACGAAAAAATATTCAGGATTGAAGATTATTT  Raphanus raphanistrum subsp. landra

               151    -    201
UN10614        --> ATCGTTAAAAACATT-GAAACATTCAGGATTGCGCCACTGCGGCAGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ATCGTTAAAAACATT-GAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ATCGTTAAAAACATTTGAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus raphanistrum subsp. maritimus
FD568449       <-- ATCGTTAAAAACATT-GAAACATTCAGGATTGCGCCACTGCGGCAGAATC  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- ATCGTTAAAAACATTTGAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus raphanistrum subsp. landra
FY439757       <-- .........AACATT-GAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus sativus cv GSK3-1
EW722078       <-- ...........................GATTGCGCCACTGCGGCAGCATC  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- ............................................AGCATC  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- ..................................................  Raphanus sativus cv GSK3-1
EW726188       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD978728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> ATCGTTAAAAACATT-GAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> ATCGTTAAAAACATT-GAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> ATCGTTAAAAACATTTGAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus raphanistrum subsp. landra
EW726935       --> ATCGTTAAAAACATT-GAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus sativus cv Early Scarlet Globe
EW727225       --> ATCGTTAAAAACATT-GAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus sativus cv Early Scarlet Globe
FD974909       --> ATCGTTAAAAACATT-GAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> ATCGTTAAAAACATTTGAAACATTCAGGATTGCGCCACTGCGGCAGCATC  Raphanus raphanistrum subsp. landra

               201    -    251
UN10614        --> AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
EV526484       <-- AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
FD568449       <-- AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
EV569539       <-- AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
FY439757       <-- AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
EW722078       <-- AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
EW722077       <-- AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
FY449939       <-- ..................................................
EW726188       <-- ..................................................
EV565982       <-- ..................................................
FD978728       <-- ..................................................
FD977812       --> AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
EY909774       --> AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
EV571207       --> AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
EW726935       --> AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
EW727225       --> AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT
FD974909       --> AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGAT
EV574061       --> AATGGAACGAAGCGCTTGGTTTGCAAAATAGCGAACATCGACATCAGGGT

               251    -    301
UN10614        --> CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTATCAACCACTGAT  Raphanus raphanistrum subsp. maritimus
FD568449       <-- CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTATCAACCACTGAT  Raphanus raphanistrum subsp. landra
FY439757       <-- CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus sativus cv GSK3-1
EW722078       <-- CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- ..................AACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus sativus cv GSK3-1
EW726188       <-- ................................gatgtttgtcaCACTGAT  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD978728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> CCTCGCTCAGGTCCACCAAACACTGACAGATTGTTTTATCAACCACTGAT  Raphanus raphanistrum subsp. landra
EW726935       --> CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus sativus cv Early Scarlet Globe
EW727225       --> CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus sativus cv Early Scarlet Globe
FD974909       --> CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTGTCCACCACTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> CCTCGCTCAGGTCCACCAAACACTGACGGATTGTTTTATCAACCACTGAT  Raphanus raphanistrum subsp. landra

               301    -    351
UN10614        --> TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
EV526484       <-- TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
FD568449       <-- TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
EV569539       <-- TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATCGAACTT
FY439757       <-- TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
EW722078       <-- TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
EW722077       <-- TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
FY449939       <-- TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
EW726188       <-- -GGTCGACTATGGG-ATGAGGGAT-GCAGAAGCT-AGCAACAT-G-ACTT
EV565982       <-- ..................................................
FD978728       <-- ..................................................
FD977812       --> TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
EY909774       --> TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
EV571207       --> TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
EW726935       --> TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
EW727225       --> TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATTGAACTT
FD974909       --> TGGTCGACTATGGGGATGAGGGATTGCAAAAGCTTAGCAACATTGAACTT
EV574061       --> TGGTCGACTATGGGGATGAGGGATTGCAGAAGCTTAGCAACATCGAACTT

               351    -    401
UN10614        --> GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
EV526484       <-- GATGTTc...........................................
FD568449       <-- GATGTTTG-AACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
EV569539       <-- GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
FY439757       <-- GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
EW722078       <-- GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
EW722077       <-- GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
FY449939       <-- GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
EW726188       <-- GATGTT-GG-ACTCTGTCTTTG-ATG-CTCAACCACCACAGGAAGAA-CT
EV565982       <-- ...............................ACCACCACAGGAAGAAACT
FD978728       <-- ..................................................
FD977812       --> GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
EY909774       --> GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
EV571207       --> GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
EW726935       --> GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
EW727225       --> GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
FD974909       --> GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT
EV574061       --> GATGTTTGGAACTCTGTCTTTGGATGCCTCAACCACCACAGGAAGAAACT

               401    -    451
UN10614        --> TGGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- TGGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD568449       <-- TGGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- TAGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus raphanistrum subsp. landra
FY439757       <-- TAGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus sativus cv GSK3-1
EW722078       <-- TGGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- TGGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- TAGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus sativus cv GSK3-1
EW726188       <-- TGGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- TAGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus raphanistrum subsp. landra
FD978728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> TGGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> TGGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> TAGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus raphanistrum subsp. landra
EW726935       --> TGGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus sativus cv Early Scarlet Globe
EW727225       --> TGGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus sativus cv Early Scarlet Globe
FD974909       --> TAGAGCAAGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> TAGAGCACGTGATTTCTGATCCCATTACAGGAGCCATGAGAGAGATTGCA  Raphanus raphanistrum subsp. landra

               451    -    501
UN10614        --> CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- CGTAGAGCCATCATCCTATGTAGGTAGTGAGGATTGTTGA..........
EV526484       <-- ..................................................
FD568449       <-- CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
EV569539       <-- CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
FY439757       <-- CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
EW722078       <-- CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
EW722077       <-- CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
FY449939       <-- CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
EW726188       <-- CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
EV565982       <-- CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
FD978728       <-- ..................................................
FD977812       --> CGTAGAGCCATCATCCTATGTAGGTAGTGAGGATTGTTGACCATGTCCAA
EY909774       --> CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
EV571207       --> CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
EW726935       --> CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
EW727225       --> CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
FD974909       --> CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA
EV574061       --> CGTAGAGCCATCATCCTATGTAGGTAGTGCGGATTGTTGACCATGTCCAA

               501    -    551
UN10614        --> CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCGAACTCCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD568449       <-- CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCGAACTCCTCTG  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- CACCTGGGGAACTATGTGCTGCATTGCCCATTTAGAACCAAACTCCTCTG  Raphanus raphanistrum subsp. landra
FY439757       <-- CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCAAACTCCTCTG  Raphanus sativus cv GSK3-1
EW722078       <-- CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCGAACTCCTCTG  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCGAACTCCTCTG  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCAAACTCCTCTG  Raphanus sativus cv GSK3-1
EW726188       <-- CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCGAACTCCTCTG  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCAAACTCCTCTG  Raphanus raphanistrum subsp. landra
FD978728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> CACCTGGGGAACTATGTGCTGCc...........................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCGAACTCCTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCAAACTCCTCTG  Raphanus raphanistrum subsp. landra
EW726935       --> CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCGAACTCCTCTG  Raphanus sativus cv Early Scarlet Globe
EW727225       --> CACCTGGGGAACTATGTGCTGCATTGCCCATTCAGAACCGAACTCCTCTG  Raphanus sativus cv Early Scarlet Globe
FD974909       --> CACCTGGGGTACTATGTGCTGCATTGCCCATTCAGAACCAAACTCCTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> CACCTGGGGAACTATGTGCTGCATTGCCCATTTAGAACCAAACTCCTCTG  Raphanus raphanistrum subsp. landra

               551    -    601
UN10614        --> CAAGACGCTTTAGGTTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD568449       <-- CAAGACGCTTTAGGTTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- CAAGGCGCTTTAAGTTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG  Raphanus raphanistrum subsp. landra
FY439757       <-- CAAGACGCTTTAGGTTGTTTGCTGCGGCTTCACGGATAGAGTAGACCTTG  Raphanus sativus cv GSK3-1
EW722078       <-- CAAGACGCTTTAGGTTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- CAAGACGCTTTAGGTTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- CAAGACGCTTTAGGTTGTTTGCTGCGGCTTCACGGATAGAGTAGACCTTG  Raphanus sativus cv GSK3-1
EW726188       <-- CAAGACGCTTTAGGTTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- CAAGGCGCTTTAAGCTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG  Raphanus raphanistrum subsp. landra
FD978728       <-- .......................................AGTAGACCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> CAAGACGCTTTAGGTTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> CAAGGCGCTTTAAGCTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG  Raphanus raphanistrum subsp. landra
EW726935       --> CAAGACGCTTTAGGTTGTTTGCTGCAGCTTCACGGATAGAGTAAACCTTG  Raphanus sativus cv Early Scarlet Globe
EW727225       --> CAAGACGCTTTAGGTTGTTTGCTGCAGCTTCACGGATAGAGTAAACCTTG  Raphanus sativus cv Early Scarlet Globe
FD974909       --> CAAGACACTTTAGGTTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> CAAGGCGCTTTAAGTTGTTTGCTGCAGCTTCACGGATAGAGTAGACCTTG  Raphanus raphanistrum subsp. landra

               601    -    651
UN10614        --> TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................
EV526484       <-- ..................................................
FD568449       <-- TCTTGCATCCATTc....................................
EV569539       <-- TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
FY439757       <-- TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
EW722078       <-- TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
EW722077       <-- TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
FY449939       <-- TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
EW726188       <-- TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
EV565982       <-- TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
FD978728       <-- TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAAAACCC
FD977812       --> ..................................................
EY909774       --> TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
EV571207       --> TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
EW726935       --> TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
EW727225       --> TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC
FD974909       --> TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAAAACCC
EV574061       --> TCTTGCATCCATTGCATGCAAAGGGCTCCGAGCTTGTCATCGAAGAACCC

               651    -    701
UN10614        --> TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD568449       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- TATACCTAACTGGCTAGCCAACAGAGGAACGTACCCAATTATAGCAAGCC  Raphanus raphanistrum subsp. landra
FY439757       <-- TATACCTAACTGGCTAGCCAACAGAGGAACATACTCAATTATAGCAAGTC  Raphanus sativus cv GSK3-1
EW722078       <-- TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGCC  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGCC  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- TATACCTAACTGGCTAGCCAACAGAGGAACATACTCAATTATAGCAAGTC  Raphanus sativus cv GSK3-1
EW726188       <-- TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGCC  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGCC  Raphanus raphanistrum subsp. landra
FD978728       <-- TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGCC  Raphanus raphanistrum subsp. landra
EW726935       --> TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGCC  Raphanus sativus cv Early Scarlet Globe
EW727225       --> TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGCC  Raphanus sativus cv Early Scarlet Globe
FD974909       --> TATACCTAACTGGCTAGCCAACAGAGGAACGTACTCAATTATAGCAAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> TATACCTAACTGGCTAGCCAACAGAGGAACGTACCCAATTATAGCAAGCC  Raphanus raphanistrum subsp. landra

               701    -    751
UN10614        --> GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................
EV526484       <-- ..................................................
FD568449       <-- ..................................................
EV569539       <-- GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
FY439757       <-- GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
EW722078       <-- GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
EW722077       <-- GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
FY449939       <-- GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
EW726188       <-- GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
EV565982       <-- GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
FD978728       <-- GGACTCTCCAGTGACGATCCTCAGCAAGCTCTACAATCGCAGGCAACAGG
FD977812       --> ..................................................
EY909774       --> GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAAT.............
EV571207       --> GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
EW726935       --> GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
EW727225       --> GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG
FD974909       --> GGACTCTCCAGTGACGATCCTCAGCAAGCTCTACAATCGCAGGCAACAGG
EV574061       --> GGACTCTCCAGTGCCGATCCTCAGCAAGCTCAACAATCGCAGGCAACAAG

               751    -    801
UN10614        --> GACTGTGATAGCAGATCGATTCCAATAACCTGGTTGACTTGATCTAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD568449       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- GACTGTGATAGCAGATCGATTCCAATAACCTGGTTGACTTGATCTAGCTT  Raphanus raphanistrum subsp. landra
FY439757       <-- GACTGTGATAGCAGATCAATTCCAATAACCTGGTTGACTTGGTCTAGCTT  Raphanus sativus cv GSK3-1
EW722078       <-- GACTGTGATAGCAGATCGATTCCAATAACCTGGTTGACTTGATCTAGCTT  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- GACTGTGATAGCAGATCGATTCCAATAACCTGGTTGACTTGATCTAGCTT  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- GACTGTGATAGCAGATCAATTCCAATAACCTGGTTGACTTGGTCTAGCTT  Raphanus sativus cv GSK3-1
EW726188       <-- GACTGTGATAGCAGATCGATTCCAATAACCTGGTTGACTTGATCTAGCTT  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- GACTGTGATAGCAGATCGATTCCAATAACCTGGTTGACTTGATCTAGCTT  Raphanus raphanistrum subsp. landra
FD978728       <-- GACTGTGATAGCAGATCGATTCCAATCACCTGGTTGAATTGGTCTAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> GACTGTGATAGCAGATCGATTCCAATAACCTGGTTGACTTGATCTAGCTT  Raphanus raphanistrum subsp. landra
EW726935       --> GACTGTGATAGCAGATCGATTCCAATAACCTGGTTGACTTGATCTAGCTT  Raphanus sativus cv Early Scarlet Globe
EW727225       --> GACTGTGATAGCAGATCGATTCCAATAACCTGGTTGACTTGATCTAGCTT  Raphanus sativus cv Early Scarlet Globe
FD974909       --> GACTGTGATAGCAGATCGATTCCAATCACCTGGTTGA-TTGGTCTAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> GACTGTGATAGCAGATCGATTCCAATAACCTGGTTGACTTGATCTAGCTT  Raphanus raphanistrum subsp. landra

               801    -    851
UN10614        --> GCTTATGATGTTGAGGCGTACATCAGGAAACTCATCTTTCAAAAGGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD568449       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- GCTTATGATGTTGAGTCGTACATCAGGAAACTC.................  Raphanus raphanistrum subsp. landra
FY439757       <-- GCTTATGATGTTGAGGCGTACATCAGGAAATTCATCTTTCAAAAGGGAAA  Raphanus sativus cv GSK3-1
EW722078       <-- GCTTATGATGTTGAGGCGTACATCAGGAAACTCATCTTTCAAAAGGGAAA  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- GCTTATGATGTTGAGGCGTACATCAGGAAACTCATCTTTCAAAAGGGAAA  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- GCTTATGATGTTGAGGCGTACATCAGGAAATTCATCTTTCAAAAGGGAAA  Raphanus sativus cv GSK3-1
EW726188       <-- GCTTATGATGTTGAGGCGTACATCAGGAAACTCATCTTTCAAAAGGGAAA  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- GCTTATGATGTTGAGTCGTACATCAGGAAACTCATCTTTCAAAAGGGAAA  Raphanus raphanistrum subsp. landra
FD978728       <-- GCTTATGATGTTGAGGCGTACATCAGGAAATTCATCTTTCAAAAGGGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> GCTTATGATGTTGAGTCGTACATCAG-AAACTCATCTTTCAA........  Raphanus raphanistrum subsp. landra
EW726935       --> GCTTATGATGTTGAGGCGTACATCAGGAAACTCATCTTT...........  Raphanus sativus cv Early Scarlet Globe
EW727225       --> GCTTATGATGTTGAGGCGTACATCAGGAAACTCATCTTTCA.........  Raphanus sativus cv Early Scarlet Globe
FD974909       --> GCTTATGATGTTGAGGCGTACATCAGaaat....................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> GCTTATGATGTTGAGTCGTACATCAGGAAACTC.................  Raphanus raphanistrum subsp. landra

               851    -    901
UN10614        --> GAAAAATTGGTAGAAGATGCTCAATGGTTGAATCCTTGCCAAGGATAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD568449       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY439757       <-- GAAAAATTGGTAGCAGATGCTCAATCGTTGAATCCTTGCCAAGGATAGGA  Raphanus sativus cv GSK3-1
EW722078       <-- GAAAAATTGGTAGAAGATGCTCAATGGTTGAATCCTTGCCAAGGATAGGA  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- GAAAAATTGGTAGAAGATGCTCAATGGTTGAATCCTTGCCAAGGATAGGA  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- GAAAAATTGGTAGCAGATGCTCAATCGTTGAATCCTTGCCAAGGATAGGA  Raphanus sativus cv GSK3-1
EW726188       <-- GAAAAATTGGTAGAAGATGCTCAATGGTTGAATCCTTGCCAAGGATAGGA  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- GAAAAATTGGTAGCAGATGCTCAATGGTTGAATCCTTGCCAAGGATAGGA  Raphanus raphanistrum subsp. landra
FD978728       <-- GAAAAATTGGTAGAAGATGCTCAATGGTTGAATCCTTGCCAAGGATAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> ..................................................  Raphanus raphanistrum subsp. landra
EW726935       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW727225       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD974909       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> ..................................................  Raphanus raphanistrum subsp. landra

               901    -    951
UN10614        --> GCCATCCCCATTATTACTGAAGCTAGAGCAGATCGGACATGTTGAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD568449       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY439757       <-- GCCATTCCCATTATTACTGAAGCTAGAGCAGAGCGGACATGTTGAGAAGA  Raphanus sativus cv GSK3-1
EW722078       <-- GCCATCCCCATTATTACTGAAGCTAGAGCAGATCGGACATGTTGAGAAGA  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- GCCATCCCCATTATTACTGAAGCTAGAGCAGATCGGACATGTTGAGAAGA  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- GCCATTCCCATTATTACTGAAGCTAGAGCAGAGCGGACATGTTGAGAAGA  Raphanus sativus cv GSK3-1
EW726188       <-- GCCATCCCCATTATTACTGAAGCTAGAGCAGTTCGGACATGTTGAGAAGA  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- GCCATCCCCATTATTACTGAAGCTAGAGCAGATCGGACATGTTGAGAAGA  Raphanus raphanistrum subsp. landra
FD978728       <-- GCCATCCCCATTATTACTGAAGCCAGAGCAGAGCGGACATGTTGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> ..................................................  Raphanus raphanistrum subsp. landra
EW726935       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW727225       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD974909       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> ..................................................  Raphanus raphanistrum subsp. landra

               951    -   1001
UN10614        --> ATCAGATGATAATTCCTTCACACAAGGAAGGATGTGCTGGATCGCAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526484       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD568449       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569539       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY439757       <-- ATCAGATGATAATTCCTTCACACAAGGAAGGATGTGCTGGATGGCAAGCT  Raphanus sativus cv GSK3-1
EW722078       <-- ATCAGATGATAATTCCTTCACACAAGGAAGGATGTGCTGGATCGCAAGTT  Raphanus sativus cv Early Scarlet Globe
EW722077       <-- ATCAGATGATAATTCCTTCACACAAGGAAGGATGTGCTGGATCGCAAGTT  Raphanus sativus cv Early Scarlet Globe
FY449939       <-- ATCAGATGATAATTCCTTCACACAAGGAAGGATGTGCTGGATGGCAAGCT  Raphanus sativus cv GSK3-1
EW726188       <-- ATCAGATGATAATTCCTTCACACAAGGAAGGATGTGCTGGATCGCAAGTT  Raphanus sativus cv Early Scarlet Globe
EV565982       <-- ATCAGATGATAATTCCTTCACACAAGGAAGGATGTGCTGGATGGCAAGCT  Raphanus raphanistrum subsp. landra
FD978728       <-- ATCAGATGATAATTCCTTCACACAAGGAAGGATGTGCTGGATCGCAAGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977812       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909774       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571207       --> ..................................................  Raphanus raphanistrum subsp. landra
EW726935       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW727225       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD974909       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574061       --> ..................................................  Raphanus raphanistrum subsp. landra

               1001   -   1051
UN10614        --> CTGGATTCAAAAGCTGACAGAACTTAGTCACTTTTCCCGCTGCTGCTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................
EV526484       <-- ..................................................
FD568449       <-- ..................................................
EV569539       <-- ..................................................
FY439757       <-- CTG-ATTCAAAAGC....................................
EW722078       <-- CTGGATTCAAAAGCTGACAGAACc..........................
EW722077       <-- CTGGATTCAAAAGCTGACAGAACc..........................
FY449939       <-- CTGGATTCAAAAGCTGACAGAACTTAGTCACTTTTCCCGCTGCTGCTATT
EW726188       <-- CTGGATTCAAAAGCTGACAGAACTTAGTCACTTTTCCCGCTGCTGCTATT
EV565982       <-- CTGGATTCAAAAGCTGACAGAACTTAGTCACTTTTCCCGCTGCTGCTATA
FD978728       <-- CTGGATTCAAAAGCTGACAGAACTTAGTCACTTTTCCCGCTGCTGCTATT
FD977812       --> ..................................................
EY909774       --> ..................................................
EV571207       --> ..................................................
EW726935       --> ..................................................
EW727225       --> ..................................................
FD974909       --> ..................................................
EV574061       --> ..................................................

               1051   -   1101
UN10614        --> CGCACTTCAGCCTCATTGTCACGTAGCAATCTCACATATGCAGGAACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................
EV526484       <-- ..................................................
FD568449       <-- ..................................................
EV569539       <-- ..................................................
FY439757       <-- ..................................................
EW722078       <-- ..................................................
EW722077       <-- ..................................................
FY449939       <-- CGCACTTCAGCCTCATTGTCACGTAGCAATCTCA................
EW726188       <-- CGCACTTCAGCCTCATTGTCACc...........................
EV565982       <-- CGCACTTCAGCCTCATTGTCACGTAGCAATCTCACATATGCAGGAACCAA
FD978728       <-- AGCACTTCAGCCTCATTGTCACGTAGCAATCTCACATATGCAGGAACCAA
FD977812       --> ..................................................
EY909774       --> ..................................................
EV571207       --> ..................................................
EW726935       --> ..................................................
EW727225       --> ..................................................
FD974909       --> ..................................................
EV574061       --> ..................................................

               1101   -   1151
UN10614        --> ATCCGTCTTGGTGCAATCAGGACCCACTGCCTCGCAAAGTTCGTATAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................
EV526484       <-- ..................................................
FD568449       <-- ..................................................
EV569539       <-- ..................................................
FY439757       <-- ..................................................
EW722078       <-- ..................................................
EW722077       <-- ..................................................
FY449939       <-- ..................................................
EW726188       <-- ..................................................
EV565982       <-- ATCCGTCTTGGTGCAATCAGGACCCACTGCCTCGCAAAGTTCGTATAGCT
FD978728       <-- ATCCGTCTTGATGCAATCAGGACCCACTGCCTCACAAAGTTCGTATAGCT
FD977812       --> ..................................................
EY909774       --> ..................................................
EV571207       --> ..................................................
EW726935       --> ..................................................
EW727225       --> ..................................................
FD974909       --> ..................................................
EV574061       --> ..................................................

               1151   -   1201
UN10614        --> GGTTAGCAACCATGTAGCGCACCCTCCATGATTTATCCTGAGAGAAATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................
EV526484       <-- ..................................................
FD568449       <-- ..................................................
EV569539       <-- ..................................................
FY439757       <-- ..................................................
EW722078       <-- ..................................................
EW722077       <-- ..................................................
FY449939       <-- ..................................................
EW726188       <-- ..................................................
EV565982       <-- GATTAGCAACCATGTAGCGCACCCTCCATGATTTATCCTGAGAcc.....
FD978728       <-- GGTTAGCAACCATGTAGCGCACCCTCCAAGATTTATCCTGAGAGAAATTA
FD977812       --> ..................................................
EY909774       --> ..................................................
EV571207       --> ..................................................
EW726935       --> ..................................................
EW727225       --> ..................................................
FD974909       --> ..................................................
EV574061       --> ..................................................

               1201   -   1251
UN10614        --> ACAATAACAGGTAAAATGCGTGCAACACAATCCTGAGGTTCCAACAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................
EV526484       <-- ..................................................
FD568449       <-- ..................................................
EV569539       <-- ..................................................
FY439757       <-- ..................................................
EW722078       <-- ..................................................
EW722077       <-- ..................................................
FY449939       <-- ..................................................
EW726188       <-- ..................................................
EV565982       <-- ..................................................
FD978728       <-- ACAATAACAGGTAAAATGCGTGCAACACAATCCTGAGGTTCCAACAACTT
FD977812       --> ..................................................
EY909774       --> ..................................................
EV571207       --> ..................................................
EW726935       --> ..................................................
EW727225       --> ..................................................
FD974909       --> ..................................................
EV574061       --> ..................................................

               1251   -   1301
UN10614        --> TCCAAGAGCTGCACAGCCTTCCACAGCCAACAGTCTAACAGAATCCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..................................................
EV526484       <-- ..................................................
FD568449       <-- ..................................................
EV569539       <-- ..................................................
FY439757       <-- ..................................................
EW722078       <-- ..................................................
EW722077       <-- ..................................................
FY449939       <-- ..................................................
EW726188       <-- ..................................................
EV565982       <-- ..................................................
FD978728       <-- TCCAAGAGCTGCACAGCCTTCCACAGCCAACAGTCTAACAGAATCCTGCT
FD977812       --> ..................................................
EY909774       --> ..................................................
EV571207       --> ..................................................
EW726935       --> ..................................................
EW727225       --> ..................................................
FD974909       --> ..................................................
EV574061       --> ..................................................

               1301   -   1351
UN10614        --> CATCTTTAGTAAGACCATCGAACATAGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982210       <-- ..............................
EV526484       <-- ..............................
FD568449       <-- ..............................
EV569539       <-- ..............................
FY439757       <-- ..............................
EW722078       <-- ..............................
EW722077       <-- ..............................
FY449939       <-- ..............................
EW726188       <-- ..............................
EV565982       <-- ..............................
FD978728       <-- CATCTTTAGTAAGACCATCGAACATAGTCC
FD977812       --> ..............................
EY909774       --> ..............................
EV571207       --> ..............................
EW726935       --> ..............................
EW727225       --> ..............................
FD974909       --> ..............................
EV574061       --> ..............................