1      -     51
UN10870        --> TTTTTTTCGTAGTAAATCGTTTATTGTAGCATTATAAAAAGTGTAATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- ......................................AAGTGTA-TATC
FD979193       <-- ..................................................
EX755515       <-- ..................................................
EX894926       <-- ..................................................
EV570318       <-- ..................................................
FD558718       <-- ..................................................
EY940127       <-- ..................................................
EY923914       <-- ..................................................
EX894687       <-- ..................................................
EY897219       <-- ..................................................
FD975283       --> TTTTTTTCGTAGTAAATCGTTTATTGTAGCATTATAAAAAGTGTAATATC
EY919647       --> .......CGTAGTAAATCGTTTATTGTAGCATTATAAAAAGTGTAATATC
FD554558       --> .......CGTAGTAAATCGTTTATTGTAGCATTATAAAAAGTGTAATATC
EV573668       --> .......gGTAGTAAATCGTTTATTGTAGCATTATAAAAAGTGTAATATC
EV532169       --> ..................................................

               51     -    101
UN10870        --> TACATTGTGCATAAAGTCTTTAGCATGCATATATATGTGCAATCAATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- TACAT-GTGCATAAAGTCTT-AGCATGCATATATATGTGCAATCAATCTC
FD979193       <-- ..................................................
EX755515       <-- ..................................................
EX894926       <-- ..................................................
EV570318       <-- ..................................................
FD558718       <-- ..................................................
EY940127       <-- ..................................................
EY923914       <-- ..................................................
EX894687       <-- ..................................................
EY897219       <-- ..................................................
FD975283       --> TACATTGTGCATAAAGTCTTTAGCATGCATATATATGTGCAATCAATCTC
EY919647       --> TACATTGTGCATAAAGTCTTTAGCATGCATATATATGTGCAATCAATCTC
FD554558       --> TACATTGTGCATAAAGTCTTTAGCATGCATATATATGTGCAATCAATCTC
EV573668       --> TACATTGTGCATAAAGTCTTTAGCATGCATATATATGTGCAATCAATCTC
EV532169       --> ..................................................

               101    -    151
UN10870        --> ATGTTTTTTTATTCATGCATATCTATGTGCAATCTCCAAGAGACGAGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- ATGTTTTTT-ATTCATGCATATCTATGTGCAATCTCCAAGAGACGAGCAC
FD979193       <-- ..................................................
EX755515       <-- ..................................................
EX894926       <-- ..................................................
EV570318       <-- ..................................................
FD558718       <-- ..................................................
EY940127       <-- ..................................................
EY923914       <-- ..................................................
EX894687       <-- ..................................................
EY897219       <-- ..................................................
FD975283       --> ATGTTTTTTTATTCATGCATATCTATGTGCAATCTCCAAGAAACGAGCAC
EY919647       --> ATGTTTTTTTATTCATGCATATCTATGTGCAATCTCCAAGAGACGAGCAC
FD554558       --> ATGTTTTTTTATTCATGCATATCTATGTGCAATCTCCAAGAGACGAGCAC
EV573668       --> ATGTTTTTTTATTCATGCATATCTATGTGCAATCTCCAAGAGACGAGCAC
EV532169       --> ..................................................

               151    -    201
UN10870        --> AGAGTTCTCGAGGCTTGGAGTTCATTGGCATATGATCCGCAGCTTTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- AGAGTTCTCGAGGCTTGGAGTTCATTGGCATATGATCCGCAGCTTTGATT
FD979193       <-- .........................TGGCATATGATCCGCAGCTTTGATT
EX755515       <-- ..................................................
EX894926       <-- ..................................................
EV570318       <-- ..................................................
FD558718       <-- ..................................................
EY940127       <-- ..................................................
EY923914       <-- ..................................................
EX894687       <-- ..................................................
EY897219       <-- ..................................................
FD975283       --> AGAGTTCTCGAGGCTTGGAGTTCATTGGCATATGATCCGCAGCTTTGATT
EY919647       --> AGAGTTCTCGAGGCTTGGAGTTCATTGGCATATGATCCGCAGCTTTGATT
FD554558       --> AGAGTTCTCGAGGCTTGGAGTTCATTGGCATATGATCCGCAGCTTTGATT
EV573668       --> AGAGTTCTCGAGGCTTGGAGTTCATTGGCATATGATCCGCAGCTTTGATT
EV532169       --> ..................................................

               201    -    251
UN10870        --> TCCATTACTTCTTTTACCGGAAAGTTGTTGATCATCCAACGCTGGTAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- TCCATTACTTCTTTTACCGGAAAGTTGTTGATCATCCAACGCTGGTAATC
FD979193       <-- TCCATTACTTCTTTTAC-GGAAAGTTGTTGATCATCCAACGCTGGTAATC
EX755515       <-- ...................GAAAGTTGTTGATCATCCAACGCTGGTAATC
EX894926       <-- ....................AAAGTTATTGATCATCCAACGATGGTAATC
EV570318       <-- ......................AGTTGTTGATCATCCAACGCTGGTAATC
FD558718       <-- ..................................................
EY940127       <-- ..................................................
EY923914       <-- ..................................................
EX894687       <-- ..................................................
EY897219       <-- ..................................................
FD975283       --> TCCATTACTTCTTTTACCGGAAAGTTGTTGATCATCCAACGCTGGTAATC
EY919647       --> TCCATTACTTCTTTTACCGGAAAGTTGTTGATCATCCAACGCTGGTAATC
FD554558       --> TCCATTACTTCTTTTACCGGAAAGTTGTTGATCATCCAACGCTGGTAATC
EV573668       --> TCCATTACTTCTTTTACCGGAAAGTTGTTGATCATCCAACGCTGGTAATC
EV532169       --> .................caaAAAGTTGTTGATCATCCAACGCTGGTAATC

               251    -    301
UN10870        --> ATTACGTATCACATTATCCTTTCCGCATGTGATGTAGATACGCGTAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- ATTACGTATCACATTATCCTTTCCGCATGTGATGTAGATACGCGTAACAG
FD979193       <-- ATTACGTATCACATTATCCTTTCCGCATGTGATGTAGATACGCGTAACAG
EX755515       <-- ATTACGTATCACATTATCCTTTCCGCATGTGATGTAGATACGCGTAACAG
EX894926       <-- ATTACGTATCACATTATCCTTTCCGCATGTGATGTAGATACGCGTAACAG
EV570318       <-- ATTACGTATCACATTATCCTTTCCGCATGTGATGTAGATACGCGTAACAG
FD558718       <-- ..................................................
EY940127       <-- ..................................................
EY923914       <-- ..................................................
EX894687       <-- ..................................................
EY897219       <-- ..................................................
FD975283       --> ATTACGTATCACATTATCCTTTCCGCATGTGATGTAAATACGCGTAACAA
EY919647       --> ATTACGTATCACATTATCCTTTCCGCATGCGATGTAAATACGCGTAACAG
FD554558       --> ATTACGTATCACATTATCCTTTCCGCATGCGATGTAAATACGCGTAACAG
EV573668       --> ATTACGTATCACATTATCCTTTCCGCATGTGATGTAGATACGCGTAACAG
EV532169       --> ATTACGTATCACATTATCCTTTCCGCATGTGATGTAAATACCCGTAACAA

               301    -    351
UN10870        --> ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGGTTGTCCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGGTTGTCCGTA
FD979193       <-- ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGGTTGTCCGTA
EX755515       <-- ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGGTTGTCCGTA
EX894926       <-- ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCTCTGCCAGGTTGTCCGTA
EV570318       <-- ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGGTTGTCCGTA
FD558718       <-- .......CCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGGTTGTCCGTA
EY940127       <-- .................GTGAAGCTTCCTGTCTCTGCCAGGTTGTCCGTA
EY923914       <-- ....................................CCAGATTGTCCGTA
EX894687       <-- ..................................................
EY897219       <-- ..................................................
FD975283       --> ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGGTTGTCCGTA
EY919647       --> ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGATTGTCCGTA
FD554558       --> ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGGTTGTCCGTA
EV573668       --> ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGGTTGTCCGTA
EV532169       --> ATCCGTACCCTTCCTCAGTGAAGCTTCCTGTCCCTGCCAGGTTGTCCGTA

               351    -    401
UN10870        --> ACTGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTCAAGATCCTCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- ACTGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTAAAGATCCTCGAC
FD979193       <-- ACTGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTCAAGATCCTCGAC
EX755515       <-- ACGGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTCAAGATCCTCGAC
EX894926       <-- ACTGATGGGTTTACCCTCACCAGCATTTTCGCCAATTCAAGATCCTCGAC
EV570318       <-- ACTGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTAAAGATCCTCGAC
FD558718       <-- ACTGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTCAAGATCCTCGAC
EY940127       <-- ACTGATGGGTTTACCCTCACCAGCATTTTCGCCAATTCAAGATCCTCGAC
EY923914       <-- ACTGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTCAAGATCCTCGAC
EX894687       <-- ACTGATGGGTTTACCCTCACCAGCATTTTCGCCAATTCAAGATCCTCGAC
EY897219       <-- ACTGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTCAAGATCCTCGAC
FD975283       --> ACTGATGGGTTTACCCTCACCAGCGTTTTCCCCAATTCAAGATCCTCGAC
EY919647       --> ACTGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTCAAGATCCTCGAC
FD554558       --> ACTGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTCAAGATCCTCGAC
EV573668       --> ACTGATGGGTTTACCCTCACCAGCGTTTTCGCCAATTAAAGATCCTCGAC
EV532169       --> ACTGATGGGTTTACCCTCACCAGCGTTTTCCCCAATTCAAAATCCTCGAC

               401    -    451
UN10870        --> TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
FD979193       <-- TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
EX755515       <-- TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
EX894926       <-- TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
EV570318       <-- TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
FD558718       <-- TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
EY940127       <-- TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
EY923914       <-- TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
EX894687       <-- TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
EY897219       <-- TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
FD975283       --> TGGTGAAAGTTGATACAAATTCTTGGCCAAAAACTTTGGTCCAAAGAGAG
EY919647       --> TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
FD554558       --> TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
EV573668       --> TGGTGAAAGTTGATACAAATTCTTGGCCAAGAACTTTGGTCCAAAGAGAG
EV532169       --> TGG...............................................

               451    -    501
UN10870        --> CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
FD979193       <-- CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
EX755515       <-- CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
EX894926       <-- CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
EV570318       <-- CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
FD558718       <-- CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
EY940127       <-- CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
EY923914       <-- CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
EX894687       <-- CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
EY897219       <-- CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
FD975283       --> CAAACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
EY919647       --> CAAACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
FD554558       --> CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
EV573668       --> CAGACTGTAACGGATGATCAGGTCTCCCATAGCTTCCCAGCACGGTATCC
EV532169       --> ..................................................

               501    -    551
UN10870        --> AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
FD979193       <-- AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
EX755515       <-- AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTCGAGAACATAAGC
EX894926       <-- AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
EV570318       <-- AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
FD558718       <-- AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
EY940127       <-- AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
EY923914       <-- AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
EX894687       <-- AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
EY897219       <-- AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
FD975283       --> AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAAAACATAAGC
EY919647       --> AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
FD554558       --> AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
EV573668       --> AACCAATCTTGCGGTGACATGCTCGGCATGATATTTTTGAGAACATAAGC
EV532169       --> ..................................................

               551    -    601
UN10870        --> AGGTGGGTTTGTTGTGTCAGGCATGAACGATGTCACAAAGACCATAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- AGGTGGGTTTGTTGTGTCAGGCATGAACGATGTCACAAAGACCATAGCAG  Raphanus raphanistrum subsp. landra
FD979193       <-- AGGTGGGTTTGTTGTGTCAGGCATGAACGATGTCACAAAGACCATAGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755515       <-- AGGTGGGTTTGTTGTGTCAGGCATGAAGGATGTCACAAAGACCATAGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894926       <-- AGGTGGATTTGTTGTGTCAGGCATGAAGGATGTCACAAAGACCATAGCAG  Raphanus sativus cv Early Scarlet Globe
EV570318       <-- AGGTGGGTTTGTTGTGTCAGGCATGAACGATGTCACAAAGACCATAGCAG  Raphanus raphanistrum subsp. landra
FD558718       <-- AGGTGGGTTTGTTGTGTCAGGCATGAACGATGTCACAAAGACCATAGAAG  Raphanus raphanistrum subsp. landra
EY940127       <-- AGGTGGATTTGTTGTGTCAGGCATGAAGGATGTCACAAAGACCATAGCAG  Raphanus sativus cv Early Scarlet Globe
EY923914       <-- AGGTGGGTTTGTTGTGTCAGGCATGAACGATGTCACAAAGACCATAGCAG  Raphanus raphanistrum subsp. landra
EX894687       <-- AGGTGGATTTGTTGTGTCAGGCATGAAGGATGTCACAAAGACCATAGCAG  Raphanus sativus cv Early Scarlet Globe
EY897219       <-- AGGTGGATTTGTTGTGTCAGGCATGAAGGATGTCACAAAGACCATAGCAG  Raphanus raphanistrum subsp. maritimus
FD975283       --> AGGTGGGTTTGTTGTGTCAGGCATGAACGATGTCACAAAGACCATAGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919647       --> AGGTGGGTTTGTTGTGTCAGGCATGAACGATGTCACAAAGACCATAGCAG  Raphanus raphanistrum subsp. landra
FD554558       --> AGGTGGGTTTGTTGTGTCAGGCATGAACGATGTCACAAAGACCATAGAAG  Raphanus raphanistrum subsp. landra
EV573668       --> AGGTGGGTTTGTTGTGTCAGGCATGAACGATGTCACAAAGACCATAGCAG  Raphanus raphanistrum subsp. landra
EV532169       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN10870        --> CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus raphanistrum subsp. landra
FD979193       <-- CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755515       <-- CGATCTTATGAGGGAAGATGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894926       <-- CGATCTTATGAGGGAAGATGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus sativus cv Early Scarlet Globe
EV570318       <-- CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus raphanistrum subsp. landra
FD558718       <-- CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus raphanistrum subsp. landra
EY940127       <-- CGATCTTATGAGGGAAGATGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus sativus cv Early Scarlet Globe
EY923914       <-- CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCC-  Raphanus raphanistrum subsp. landra
EX894687       <-- CGATCTTATGAGGGAAGATGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus sativus cv Early Scarlet Globe
EY897219       <-- CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus raphanistrum subsp. maritimus
FD975283       --> CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919647       --> CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCC-  Raphanus raphanistrum subsp. landra
FD554558       --> CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus raphanistrum subsp. landra
EV573668       --> CGATCTTATGAGGGAAGGTGTCAGCTGCAAACGCTGCGCATATTCCTCCC  Raphanus raphanistrum subsp. landra
EV532169       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN10870        --> ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
FD979193       <-- ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
EX755515       <-- ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
EX894926       <-- ATACTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
EV570318       <-- ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
FD558718       <-- ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
EY940127       <-- ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
EY923914       <-- ATGCTATGAGCAACAAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
EX894687       <-- ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
EY897219       <-- ATGCTATGAGCAACGAGAACCACCTTATCTTCATCTGGCGAGCTCAGAAC
FD975283       --> ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
EY919647       --> ATGCTATGAGCAACAAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
FD554558       --> ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGC.......
EV573668       --> ATGCTATGAGCAACGAGAACCACCTTATCTTCATCAGGCGAGCTCAGAAC
EV532169       --> ..................................................

               701    -    751
UN10870        --> ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
FD979193       <-- ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
EX755515       <-- ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
EX894926       <-- ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATATCTTCCAATC
EV570318       <-- ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
FD558718       <-- ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
EY940127       <-- ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
EY923914       <-- ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
EX894687       <-- ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
EY897219       <-- ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
FD975283       --> ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
EY919647       --> ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
FD554558       --> ..................................................
EV573668       --> ATCAAGCAACGGTTTGCAGTAATCCTCTAGTGTTTGAATCTCTTCCAATC
EV532169       --> ..................................................

               751    -    801
UN10870        --> TGGTTGTGTTTATGCCGGACGCAGCTAGGTCTACTGCTGTCACAATGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- TGGTTGTGTTTATGCCGGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus raphanistrum subsp. landra
FD979193       <-- TGGTTGTGTTTATGCCGGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755515       <-- TGGTTGTGTTTATGCCGGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894926       <-- TGGTTGTGTTTATGCCCAACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus sativus cv Early Scarlet Globe
EV570318       <-- TGGTTGTGTTTATGCCGGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus raphanistrum subsp. landra
FD558718       <-- TGGTTGTGTTTATGCCGGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus raphanistrum subsp. landra
EY940127       <-- TGGTTGTGTTTATGCCCGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus sativus cv Early Scarlet Globe
EY923914       <-- TGGTTGTGTTTATGCCGGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus raphanistrum subsp. landra
EX894687       <-- TGGTTGTGTTTATGCCCGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus sativus cv Early Scarlet Globe
EY897219       <-- TGGTTGTGTTTATGCCCGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus raphanistrum subsp. maritimus
FD975283       --> TGGTTGTGTTTATGCCGGACGCAGCTAGGTCTACTGCTGTCACAATG...  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919647       --> TGGTTGTGTTTATGCCGGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus raphanistrum subsp. landra
FD554558       --> ..................................................  Raphanus raphanistrum subsp. landra
EV573668       --> TGGTTGTGTTTATGCCGGACGCAGCTAGGTCTACTGCTGTCACAATGTGA  Raphanus raphanistrum subsp. landra
EV532169       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN10870        --> CCTGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCATGCGCCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- CCTGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCATGCGCCGTG
FD979193       <-- CCTGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCATGCGCC...
EX755515       <-- CCTGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCACGCGCCGTG
EX894926       <-- CCTGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCATGCGCCGTG
EV570318       <-- CCTGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCATGCGCCGTG
FD558718       <-- CCTGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCGTGCGCCGTG
EY940127       <-- CCTGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCATGCGCCGTG
EY923914       <-- CCCGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCATGCGCCGTG
EX894687       <-- CCTGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCATGCGCCGTG
EY897219       <-- CCTGCAGCCTCGAGAATCGGTTTCACCTTGTACCAGCACCATGCGCCGTG
FD975283       --> ..................................................
EY919647       --> CCCGCAGCCT........................................
FD554558       --> ..................................................
EV573668       --> CCTGCAGCCTCGAGAATCGGTTTCACCTTGT...................
EV532169       --> ..................................................

               851    -    901
UN10870        --> GCAGATCCCGTGGACAAGCACATACCGCTTCTGCTCCTTTTTCTCCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- GCAGATCCCGTGGACAAGCACATACTGCTTCTGCTCCTTTTTCTCCATTG  Raphanus raphanistrum subsp. landra
FD979193       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755515       <-- GCAGATCCCGTGGACAAGCACATACCGCTTCTGGTCCTTTTTCTCCATcc  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894926       <-- GCAGATCCCATGGACAAGCACATACCGCTTCTGCTCCTTTTTCTCCATTG  Raphanus sativus cv Early Scarlet Globe
EV570318       <-- GCAGATCCCGTGGACAAGCACATACTGCTTCTGCTCCTTTTTCTCCATTG  Raphanus raphanistrum subsp. landra
FD558718       <-- GCAGATCCCGTGGACAAGCACATACTGCTTCTGCTCCTTTTTCTCCATTG  Raphanus raphanistrum subsp. landra
EY940127       <-- GCAGATCCCATGGACAAGCACATACCGCTTCTGCTCCTTTTTCTCCATTG  Raphanus sativus cv Early Scarlet Globe
EY923914       <-- GCAGATCCCGTGGACAAGCACATACTGCTTCTGCTCATTTTTCTCCATTG  Raphanus raphanistrum subsp. landra
EX894687       <-- GCAGATCCCATGGACAAGCACATACCGCTTCTGCTCCTTTTTCTCCATTG  Raphanus sativus cv Early Scarlet Globe
EY897219       <-- GCAGATCCCATGGACAAGCACATACCGTTTCTGGTCCTTTTTCTCCATTG  Raphanus raphanistrum subsp. maritimus
FD975283       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919647       --> ..................................................  Raphanus raphanistrum subsp. landra
FD554558       --> ..................................................  Raphanus raphanistrum subsp. landra
EV573668       --> ..................................................  Raphanus raphanistrum subsp. landra
EV532169       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN10870        --> CCTTCTTTTTATTTCAACCTTCTTGCTCTAGATAAATAGTCCTTCATCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569074       <-- CCTc..............................................
FD979193       <-- ..................................................
EX755515       <-- ca................................................
EX894926       <-- CCTcc.............................................
EV570318       <-- CCTc..............................................
FD558718       <-- CCTTCTTTTTATTTCAACCTTCTTGCTCTcgc..................
EY940127       <-- CCTTCc............................................
EY923914       <-- CCTTCc............................................
EX894687       <-- CCCTCTTTTTATTTCAACCTTCTTGCTCTAGATAAATAGTCCTTCATCGT
EY897219       <-- CCTTCTTTTTATTTCcc.................................
FD975283       --> ..................................................
EY919647       --> ..................................................
FD554558       --> ..................................................
EV573668       --> ..................................................
EV532169       --> ..................................................

               951    -   1001
UN10870        --> AAGATCC
                   ~~~~~~~
EV569074       <-- .......
FD979193       <-- .......
EX755515       <-- .......
EX894926       <-- .......
EV570318       <-- .......
FD558718       <-- .......
EY940127       <-- .......
EY923914       <-- .......
EX894687       <-- AAGATCC
EY897219       <-- .......
FD975283       --> .......
EY919647       --> .......
FD554558       --> .......
EV573668       --> .......
EV532169       --> .......