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Alignment for radish unigene UN11361

               1      -     51
UN11361        --> GCACGGAGCTCACCGTTACGATATGCTCGGTGTTTACCTCCAGAGATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> GCACGGAGCTCACCGTTACGATATGCTCGGTGTTTACCTCCAGAGATCAA
EY947584       --> ..................................................
EV566356       --> ..................................................
FD552330       --> ..................................................

               51     -    101
UN11361        --> CGGTGGTTCTGATAATCACGTGTCTTCCGATGTCGCTCCTCTTCGTATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> CGGTGGTTCTGATAATCACGTGTCTTCCGATGTCGCTCCTCTTCGTATTC
EY947584       --> ..................................................
EV566356       --> ..................................................
FD552330       --> ..................................................

               101    -    151
UN11361        --> TCGAAACCGCTTCTCAACACACTAGGCGAGCCGGAGCAAGTCGCGTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> TCGAAACCGCTTCTCAACACACTAGGCGAGCCGGAGCAAGTCGCGTCAAT
EY947584       --> ..................................................
EV566356       --> ..................................................
FD552330       --> ..................................................

               151    -    201
UN11361        --> GGCTTCCCTCTTCGTCTACGGTATGCTCCCTGTGATATTCGCTTACGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> GGCTTCCCTCTTCGTCTACGGTATGCTCCCTGTGATATTCGCTTACGCCG
EY947584       --> ..................................................
EV566356       --> ..................................................
FD552330       --> ..................................................

               201    -    251
UN11361        --> TTAACTTCCCGATCCAGAAGTTCCTCCAGGCGCAGAGCATCGTCACGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> TTAACTTCCCGATCCAGAAGTTCCTCCAAGCGCAGAGCATCGTCACGCCA
EY947584       --> ...............gGAAGTTCCTCCAGGCGCAGAGCATCGTCACGCCG
EV566356       --> ..................................................
FD552330       --> ..................................................

               251    -    301
UN11361        --> AGCGCTTACATCTCCGCCGCGGCTCTCGTTATCCACCTCGTCCTCTCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> AGCGCGTACATCTCCGCCGCGGCTCTCGTTATCCACCTCGTCCTCTCGTG
EY947584       --> AGCGCTTACATCTCAGCCGCGGCTCTCGTCATCCACCTCGTCCTCTCGTG
EV566356       --> ..................................................
FD552330       --> ..................................................

               301    -    351
UN11361        --> GGTCGCTGTGTATCGGTTGGGGTTGGGTCTCTTGGCTTTGTCTCTGGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> GGTCGCTGTGTATCGCTTGGGGTTGGGTCTCTTGGCTTTGTCTCTGGTTC
EY947584       --> GGTCGCTGTGTATCGGTTGGGGTTGGGTCTCTTGGCTTTGTCTCTGGTTC
EV566356       --> ..................................................
FD552330       --> ..................................................

               351    -    401
UN11361        --> ATAGCTTCTCGTGGTGGATCATCGTGGGGGCCCAGATTGTTTACATTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> ATAGCTTCTCGTGGTGGATCATCGTGGGGGCCCAGATTGTTTACATCAAG
EY947584       --> ATAGCTTCTCGTGGTGGATCATCGTCGGGGCCCAGATTGTTTACATTAAG
EV566356       --> ..................................................
FD552330       --> ..................................................

               401    -    451
UN11361        --> ATGAGCCCGAGATGCAGAAGGAGTTGGGAAGGGTTTAGCTGGAAAGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> ATGAGCCCAAGATGCAGAAGGAGTTGGGAAGGGTTTAGCTGGAAAGCTTT
EY947584       --> ATGAGCCCGAGATGCAGAAGGAGTTGGGAAGGGTTTAGCTGGAAAGCTTT
EV566356       --> ..................................................
FD552330       --> ..................................................

               451    -    501
UN11361        --> TGAAGGTCTTTGGGACTTTTTCCGGTTATCGGCAGCTTCGGCGGTTATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> TGAAGGTCTTTGGGACTTTTTCCGGTTATCGGCAGCTTCGGCGGTGATGC
EY947584       --> TGAAGGTCTTTGGGACTTTTTCCGGTTATCGGCAGCTTCGGCGGTTATGC
EV566356       --> ..................................................
FD552330       --> ..................................................

               501    -    551
UN11361        --> TCTGCCTTGAGTCGTGGTACTCTCAGATTCTTGTTTTGCTCGCCGGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> TCTGCCTTGAGTCGTGGTACTCTCAGATTCTTGTTTTACTCGCCGGGCTT
EY947584       --> TCTGCCTTGAGTCGTGGTACTCTCAGATTCTTGTTTTGCTCGCCGGGCTT
EV566356       --> ..................................................
FD552330       --> ..................................................

               551    -    601
UN11361        --> CTCAGGGACCCGGAGATTGCTTTGGATTCTCTCGCTATATGCATGTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ....GGGACCCGGAGATTGCTTTGGATTCTCTCGCTATATGCATGTCAAT
EY943452       <-- ..............GATTGCTTTGGATTCTCTCGCTATTTGCATGTCAAT
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> CTCAAGGACCCGGAGATTGCTTTGGATTCTCTCGCTATATGCATGTCAAT
EY947584       --> CTCAAGGACCCGGAGATTGCTTTGGATTCTCTCGCTATTTGCATGTCAAT
EV566356       --> ....GGGACCCGGAGATTGCTTTGGATTCTCTCGCTATATGCATGTCAAT
FD552330       --> ..................................................

               601    -    651
UN11361        --> TTCTGCAGTCTCGTTCATGGTTTCCGTTGGATTCAACGCAGCTGCAAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- TTCTGCAGTCTCGTTCATGGTTTCCGTTGGATTCAACGCAGCTGCAAGTG
EY943452       <-- TTCTGCAGTCTCGTTCATGGTTTCCGTTGGATTCAACGCAGCTGCAAGTG
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> TTCTGCAGTCTCGTTCATGGTTTCCGTTGGATTCAACGCAGCTGCAAGTG
EY947584       --> TTCTGCAGTCTCGTTCATGGTTTCCGTTGGATTCAACGCAGCTGCAAGTG
EV566356       --> TTCTGCAGTCTCGTTCATGGTTTCCGTTGGATTCAACGCAGCTGCAAGTG
FD552330       --> ..................................................

               651    -    701
UN11361        --> TGAGAGTAAGCAATGAATTAGGAGCTGGAAACCCAAGGGCTGCTGCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- TGAGAGTAAGCAATGAATTAGGAGCTGGAAACCCAAGGGCTGCTGCCTTC
EY943452       <-- TGAGAGTAAGCAATGAATTAGGAGCTGGAAACCCAAGGGCTGCTGCCTTC
EV544010       <-- ..................................................
FD548124       <-- ..................................................
EV548316       --> TGAGAGTAAGCAATGAA.................................
EY947584       --> TGAGAGTAAGCAATGAATTAGGAGCTGGAAACCCAAGGGCTGCTGCCTTC
EV566356       --> TGAGAGTAAGCAATGAATTAGGAGCTGGAAACCCAAGGGCTGCTGCCTTC
FD552330       --> ..................................................

               701    -    751
UN11361        --> TCCACAGTAGTGACAACAAGTGTATCATTCTTACTAGCGGTTTTCGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- TCCACAGTAGTGACAACAAGTGTATCATTCTTACTAGCGGTTTTCGAAGC
EY943452       <-- TCCACAGTAGTGACAACAAGTGTATCATTCTTACTAGCGGTTTTCGAAGC
EV544010       <-- TCCGCAGTAGTGACAACAAGTGTATCATTCTTACTAGCGGTTTTCGAAGC
FD548124       <-- ..........gGACAACAAGTGTATCATTCTTACTAGCGGTTTTCGAAGC
EV548316       --> ..................................................
EY947584       --> TCCACAGTAGTGACAACAAGTGTATCATTCTTACTAGCGGTTTTCGAAGC
EV566356       --> TCCACAGTAGTGACAACAAGTGTATCATTCTTACTAGCGGTTTTCGAAGC
FD552330       --> ..........gGACAACAAGTGTATCATTCTTACTAGCGGTTTTCGAAGC

               751    -    801
UN11361        --> CATCGTGGTCATGTCTTGGCGTAATGTCCTCAGCTACATGTTTACTGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- CATCGTGGTCATGTCTTGGCGTAATGTCCTCGGCTACATGTTTACTGATA
EY943452       <-- CATCGTGGTCATGTCTTGGCGTAATGTCCTCAGCTACATGTTTACTGATA
EV544010       <-- CATCGTGGTCATGTCTTGGCGTAGTGTCCTCAGCTACATGTTTACTGATA
FD548124       <-- CATCGTGGTCATGTCTTGGCGTAATGTCCTCAGCTACATGTTTACTGATA
EV548316       --> ..................................................
EY947584       --> CATCGTGGTCATGTCTTGGCGTAATGTCCTCAGCTACATGTTTACTGATA
EV566356       --> CATCGTGGTCATGTCTTGGCGTAATGTCCTCGGCTACATGTTTACTGATA
FD552330       --> CATCGTGGTCATGTCTTGGCGTAATGTCCTCAGCTACATGTTTACTGATA

               801    -    851
UN11361        --> GTCCTATCGTAGCCGAGGCCGTTGCGGATTTATCCCCCTTTTTAGCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- GTCCTATCGTAGCCGAGGCCGTTGCGGATTTATCCCCCTTTTTAGCCATC
EY943452       <-- GTCCTATCGTAGCCGAGGCCGTTGCGGATTTATCCCCCTTTTTAGCCATC
EV544010       <-- GTCCTATCGTAGCCGAGGCCGTTGCGGATTTATCCCCCTTTTTAGCCATC
FD548124       <-- GTCCTATCGTAGCCGAGGCCGTTGCGGATTTATCCCCCTTTTTAGCCATC
EV548316       --> ..................................................
EY947584       --> GTCCTATCGTAGCCGAGGCCGTTGCGGATTTATCCCCCTTTTTAGCCATC
EV566356       --> GTCCTATCGTAGCCGAGGCCGTTGCGGATTTATCCCCCTTTTTAGCCATC
FD552330       --> GTCCTATCGTAGCCGAGGCCGTTGCGGATTTATCCCCCTTTTTAGCCATC

               851    -    901
UN11361        --> ACTATTGTCCTCAATGGAATCCAGCCTGTTTTGTCAGGTGTGGCTGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ACTATTGTCCTCAATGGAATCCAGCCTGTTTTGTCAGGTGTGGCTGCTGG
EY943452       <-- ACTATTGTCCTCAATGGAATCCAGCCTGTTTTGTCAGGTGTGGCTGTTGG
EV544010       <-- ACTATTGTCCTCAATGGAATCCAGCCTGTTTTGTCAGGTGTGGCTGTTGG
FD548124       <-- ACTATTGTCCTCAATGGAATCCAGCCTGTTTTGTCAGGTGTGGCTGTTGG
EV548316       --> ..................................................
EY947584       --> ACTATTGTCCTCAATGGAATCCAGCCTGTTTTGT................
EV566356       --> ACTATTGTCCTCAATGGAATCCAGCCTGTTTTGTCAGGTGTGGCTGCTGG
FD552330       --> ACTATTGTCCTCAATGGAATCCAGCCTGTTTTGTCAGGTGTGGCTGTTGG

               901    -    951
UN11361        --> ATGTGGCTGGCAGGCATTTGTGGCGTACGTTAACATTGGATGTTACTACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ATGTGGCTGGCAGGCATTTGTGGCGTACGTTAACATTGGATGTTACTACG
EY943452       <-- ATGTGGCTGGCAGGCATTTGTGGCGTACGTTAACATTGGATGTTACTACG
EV544010       <-- ATGTGGCTGGCAGGCATTTGTGGCGTACGTTAACATTGGATGTTACTACG
FD548124       <-- ATGTGGCTGGCAGGCATTTGTGGCGTACGTTAACATTGGATGTTACTACG
EV548316       --> ..................................................
EY947584       --> ..................................................
EV566356       --> ATGTGGCTGGCAGGCATTTGTGGCGTACGTTAACATTGGATGTTACTACG
FD552330       --> ATGTGGCTGGCAGGCATTTGTGGCGTACGTTAACATTGGATGTTACTACG

               951    -   1001
UN11361        --> TGGTGGGGATTCCGATCGGTTTCGTACTTGGTTTCACCTATGATATGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- TGGTGGGGATTCCGATCGGTTTCGTACTTGGTTTCACCTATGATATGGGA
EY943452       <-- TGGTGGGGATTCCGATCGGTTTCGTACTTGGTTTCACCTATGATATGGGA
EV544010       <-- GGGTGGGGATTCCGATCGGTTTCGTACTTGGTTTCACCTATGATATGGGA
FD548124       <-- TGGTGGGGATTCCGATCGGTTTCGTACTTGGTTTCACCTATGATATGGGA
EV548316       --> ..................................................
EY947584       --> ..................................................
EV566356       --> TGGTGGGGATTCCGATCGGTTTCGTACTTGGTTTCACCTATGATATGGGA
FD552330       --> TGGTGGGGATTCCGATCGGTTTCGTACTTGGTTTCACCTATGATATGGGA

               1001   -   1051
UN11361        --> GCAAAGGGTATATGGACGGGGATGATTGGTGGAACATTAATGCAAACCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- GCAAAGGGTATATGGACGGGGATGATTGGTGGAACATTAGTGCAAACCAT
EY943452       <-- GCAAAGGGTATATGGACGGGGATGATTGGTGGAACATTAATGCAAACCAT
EV544010       <-- GCAAAGGGTATATGGACGGGGATGATTGGTGGAACATTAATGCAAACCAT
FD548124       <-- GCAAAGGGTAT-TGGACGGGGATGATTGGTGGAACATTAATGCAAACCAT
EV548316       --> ..................................................
EY947584       --> ..................................................
EV566356       --> GCAAAGGGTATATGGACGGGGATGATTGGTGGAACATTAGTGCAAACCAT
FD552330       --> GCAAAGGGTAT-TGGACGGGGATGATTGGTGGAACATTAATGCAAACCAT

               1051   -   1101
UN11361        --> AATCTTAGTGGTTGTTACCTTGAGAACTGATTGGGATAAAGAGGTGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- AATCTTAGTGGTTGTTACCTTGAGAACTGATTGGGATAAAGAGGTGGAGA
EY943452       <-- AATCTTAGTGTTTGTTACCTTGAGAACTGATTGGGATAAAGAGGTGGAGA
EV544010       <-- AATTTTAGTGGTTGTTACCTTGAGAACTGATTGGGATAAAGAGGTGGAGA
FD548124       <-- AATCTTAGTGGTTGTTACCTTGAGAACTGATTGGGATAAAGAGGTGGAGA
EV548316       --> ..................................................
EY947584       --> ..................................................
EV566356       --> AATCTTAGTGGTTGTTACCTTGAGAACTGATTGGGATAAAGAGGTGGAGA
FD552330       --> AATCTTAGTGGTTGTTACCTTGAGAACTGATTGGGATAAAGAGGTGGAGA

               1101   -   1151
UN11361        --> AAGCTTCGAGCCGATTGGACCAGTGGGAAGAGAGCCGTGAACGGCTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- AAGCTTCGAGCCGATTGGACCAGTGGGAAGAGAGCCGTGAACGGCTTTTG
EY943452       <-- AAGCTTCGAGCCGATTGGACCAGTGGGAAGAGAGCCGTGAACGGCTTCTT
EV544010       <-- AAGCTTCGAGCCGATTGGACCAGTGGGAAGAGAGCCGTGAACGGCTTTTG
FD548124       <-- AAGCTTCGAGCCGATTGGACCAGTGGGAAGAGAGCCGTGAACGGCTTCTG
EV548316       --> ..................................................
EY947584       --> ..................................................
EV566356       --> AAGCTTCGAGCCGATTGGACCAGTGGGAAGAGAGCCGTGAACGGCTTCTG
FD552330       --> AAGCTTCGAGCCGATTGGACCAGTGGGAAGAGAGCCGTGAACGGCTTCTG

               1151   -   1201
UN11361        --> AAGCAATAGAAAGAAGCAACAAGAATTTTCGTGTAAAAGGTTTTGGGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- AAGCAATAGAAAGAAGCAACAAGAATTTTCGTGTAAAAGGTTTTGGGAAT  Raphanus raphanistrum subsp. landra
EY943452       <-- AAGCAATAGAAAGAAGCAACAAGAATTTTCGTGTAAAAGGTTTTGGGAAT  Raphanus sativus cv Rat-Tail Radish #3870
EV544010       <-- AAGCAATAGAAAGAAACAACAAGAATTTTCGTATAAAAGGTTTTGGGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548124       <-- AAGCAATAGAAAGAAACAACAAGAATTTTCGTATAAAAGGTTTTGGGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548316       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY947584       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV566356       --> AAGCAATAGAAAGAAGCAACAAGAATTTTCGTGTAAAAGGTTTTGGGAAT  Raphanus raphanistrum subsp. landra
FD552330       --> AAGCAATAGAAAGAAACAACAAGAATTTTCGTATAAAAGGTTTTGGGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               1201   -   1251
UN11361        --> TTGAGGTCAAGCTGAAATCAATTTTTTTT-GTTTCCCAAAATCTGTGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- TTGAGGTCAAGCTGAAATCAATTTTTTTT-GTTTCCCAAAATCTGTGACC  Raphanus raphanistrum subsp. landra
EY943452       <-- TTGAGGTCAAGCTGAAATCAATTTTTTTT-GTTTCCCAAAATCTGTGACC  Raphanus sativus cv Rat-Tail Radish #3870
EV544010       <-- TTGAGGTCAAGCTGAAATCAATTTTTTTT-GTTTCCCAAAATCTGTGGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548124       <-- TTGAGGTCAAGTTGAAATCAATTTTTTTT-GTTTCCCAAAATCTGTGGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548316       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY947584       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV566356       --> TTGAGGTCAAGCTGAAATCAATTTTTTTTTGTTTCCCAAAATCTGTGACC  Raphanus raphanistrum subsp. landra
FD552330       --> TTGAGGTCAAGTTGAAATCAATTTTTTTT-GTTTCCCAAAATCTGTGGCC  Raphanus raphanistrum subsp. raphanistrum (NY)

               1251   -   1301
UN11361        --> GAGTATCACATTCCAATTGATAAATCACTAATTTTTCAATCGAAAAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- GAGTATCACATTCCAATTGATAAATCACTAATTTTTCAATCG........
EY943452       <-- GAGTATCACATTCCAATTGATAAATCACTAATTTTTCAATCGAAAAATGA
EV544010       <-- GAGTATCACATTCCAATTGATAAATCACTAATTTTTCAATCGAAAAATGA
FD548124       <-- GAGTATCACATTCCAATTGATAAATCACTAATTTTTCAATCGAAAAATGA
EV548316       --> ..................................................
EY947584       --> ..................................................
EV566356       --> GAGTATCACATTCCAATTGATAAATCACTAATTTTTCAATCG........
FD552330       --> GAGTATCACATTCCAATTGATAAATCACTAATTTTTCAATCGAAAAATGA

               1301   -   1351
UN11361        --> ATGTTGTTTTGTTGTTGACTAATGACTCGAATGTGTATCGGCATTTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ATGTTGTTTTGTTGTTGAg...............................
EV544010       <-- ATGTTGTTTTGTTGTTGACTAATGACTCGAATGTGTATCGGCATTTCACA
FD548124       <-- ATGTTGTTTTGTTGTTGACTAATGACTCGAATGTGTATCGGCATTTCACA
EV548316       --> ..................................................
EY947584       --> ..................................................
EV566356       --> ..................................................
FD552330       --> ATGTTGTTTTGTTGTTGACTAATGACTCGAATGTGTATCGGCATTTCACA

               1351   -   1401
UN11361        --> TCGAAAACCAGTCCTTACATTGGCTGTTCTTGAGAGTTTAATTTATTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- ..................................................
EY943452       <-- ..................................................
EV544010       <-- T-GAAAACCAGTCCTTACATTGGCTGTTCTTGAGAGTTTAATTTATTTTA
FD548124       <-- TCG...............................................
EV548316       --> ..................................................
EY947584       --> ..................................................
EV566356       --> ..................................................
FD552330       --> TCG...............................................

               1401   -   1451
UN11361        --> AAAAAAATCAGCGAGGATTCTATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
EV571506       <-- .........................
EY943452       <-- .........................
EV544010       <-- AAAAAAATCAGCGAGGATTCTATGG
FD548124       <-- .........................
EV548316       --> .........................
EY947584       --> .........................
EV566356       --> .........................
FD552330       --> .........................