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Alignment for radish unigene UN11490

               1      -     51
UN11490        --> GGACTCACACCTCGTCCCCTTATTTGTACGGTTCTAAAGAGATTGAAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ..................................................
EV570663       <-- ..................................................
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> GGACTCACACCTCGTCCCCTTATTTGTACGGTTCTAAAGAGATTGAAAGT
EV565350       --> ...CTCACACCTCGTCCCCTTATTTGTACGGTTCTAAAGAGATTGAAAGT
EV566581       --> .......CACCTCGTCCCCTTATTTGTACGGTTCTAAAGAGATTGAAAGT
EY913351       --> ..................................................

               51     -    101
UN11490        --> GGTTGTAATAAAAAACCAAAACAGACGCAAGGGGCAAAATCGGAAAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ..................................................
EV570663       <-- ..................................................
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> GGTTGTAATAAAAAACCAAAACAGACGCAAGGGGCAAAATCGGAAAAAAT
EV565350       --> GGTTGTAATAAAAAACCAAAACAGACGCAAGGGGCAAAATCGGAAAAAAT
EV566581       --> GGTTGTAATAAAAAACCAAAACAGACGCAAGGGGCAAAATCGGAAAAAAT
EY913351       --> ..................................................

               101    -    151
UN11490        --> CATTCAAATGGCCGCCGTGAGTAGCTCGTCGGAGACAGGAGGCGGTGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ..................................................
EV570663       <-- ..................................................
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> CATTCAAATGGCCGCCGTGAGTAGCTCGTCGGAGACAGGAGGCGGTGGTG
EV565350       --> CATTCAAATGGCCGCCGTGAGTAGCTCGTCGGAGACAGGAGGCGGTGGTG
EV566581       --> CATTCAAATGGCCGCCGTGAGTAGCTCGTCGGAGACAGGAGGCGGTGGTG
EY913351       --> ..................................................

               151    -    201
UN11490        --> GTGGCACCGGCACCGCGGAGAAGGGAGAGATCATGCTGTTCGGAGTTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ..................................................
EV570663       <-- ..................................................
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> GTGGCACCGGCACCGCGGAGAAGGGAGAGATCATGCTGTTCGGAGTTAGA
EV565350       --> GTGGCACCGGCACCGCGGAGAAGGGAGAGATCATGCTGTTCGGAGTTAGA
EV566581       --> GTGGCACCGGCACCGCGGAGAAGGGAGAGATCATGCTGTTCGGAGTTAGA
EY913351       --> ..................................................

               201    -    251
UN11490        --> GTCGTTGTCGATCCGATGAGGAAGTGTGTGAGTTTGAACAATCTCTCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ..................................................
EV570663       <-- ..................................................
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> GTCGTTGTCGATCCGATGAGGAAGTGTGTGAGTTTGAACAATCTCTCTGA
EV565350       --> GTCGTTGTCGATCCGATGAGGAAGTGTGTGAGTTTGAACAATCTCTCTGA
EV566581       --> GTCGTTGTCGATCCGATGAGGAAGTGTGTGAGTTTGAACAATCTCTCTGA
EY913351       --> ..................................................

               251    -    301
UN11490        --> TTACGAGAAGTCTTCGCCCGATGAGGAGATCCCCAAGATCGGAGATGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ..................................................
EV570663       <-- ..................................................
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> TTACGAGAAGTCTTCGCCCGATGAGGAGATCCCCAAGATCGGAGATGGAG
EV565350       --> TTACGAGAAGTCTTCGCCCGATGAGGAGATCCCCAAGATCGGAGATGGAG
EV566581       --> TTACGAGAAGTCTTCGCCCGATGAGGAGATCCCCAAGATCGGAGATGGAG
EY913351       --> ..................................................

               301    -    351
UN11490        --> AAGCTGATGTGACAGCCGCCGTCGCCGCCGGTTACGCCTCCGCCAATGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ..................................................
EV570663       <-- ..................................................
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> AAGCTGATGTGACAGCCGCCGTCGCCGCCGGTTACGCCTCCGCCAATGAC
EV565350       --> AAGCTGATGTGACAGCCGCCGTCGCCGCCGGTTACGCCTCCGCCAATGAC
EV566581       --> AAGCTGATGTGACAGCCGCCGTCGCCGCCGGTTACGCCTCCGCCAATGAC
EY913351       --> ..................................................

               351    -    401
UN11490        --> GCCGTCCAGATTCCGTCGTCCTCCGCCGGAAATCGCGAGAGGAAACGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- .................GTCCTCCGCCGGAAATCGCGAGAGGAAACGAGG
EV570663       <-- ............................GAAATCGCGAGAGGAAACGAGG
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> GCCGTCCAGATTCCGTCGTCCTCCGCCGGAAATCGCGAGAGGAAACGAGG
EV565350       --> GCCGTCCAGATTCCGTCGTCCTCCGCCGGAAATCGCGAGAGGAAACGAGG
EV566581       --> GCCGTCCAGATTCCGTCGTCCTCCGCCGGAAATCGCGAGAGGAAACGAGG
EY913351       --> ..................................................

               401    -    451
UN11490        --> AATAGCATGGACTGAAGACGAGCACAAGAGGTTCTTGCTTGGTCTGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- AATAGCATGGACTGAAGACGAGCACAAGAGGTTCTTGCTTGGTCTGAAAA
EV570663       <-- AATAGCATGGACTGAAGACGAGCACAAGAGGTTCTTGCTTGGTCTGAAAA
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> AATAGCATGGACTGAAGACGAGCACAAGAGGTTCTTGCTTGGTCTGAAAA
EV565350       --> AATAGCATGGACTGAAGACGAGCACAAGAGGTTCTTGCTTGGTCTGAAAA
EV566581       --> AATAGCATGGACTGAAGACGAGCACAAGAGGTTCTTGCTTGGTCTGAAAA
EY913351       --> ..................................................

               451    -    501
UN11490        --> AAGTAGGCAAAGGAGATTGGAAAGGGATCTCTAGAAACTTTGTCAAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- AAGTAGGCAAAGGAGATTGGAAAGGGATCTCTAGAAACTTTGTCAAGAGC
EV570663       <-- AAGTAGGCAAAGGAGATTGGAAAGGGATCTCTAGAAACTTTGTCAAGAGC
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> AAGTAGGCAAAGGAGATTGGAAAGGGATCTCTAGAAACTTTGTCAAGAGC
EV565350       --> AAGTAGGCAAAGGAGATTGGAAAGGGATCTCTAGAAACTTTGTCAAGAGC
EV566581       --> AAGTAGGCAAAGGAGATTGGAAAGGGATCTCTAGAAACTTTGTCAAGAGC
EY913351       --> ..................................................

               501    -    551
UN11490        --> AGGACGCCTACTCAGGTAGCTAGTCACGCTCAGAAATACTTCCTCCGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- AGGACGCCTACTCAGGTAGCTAGTCACGCTCAGAAATACTTCCTCCGCCG
EV570663       <-- AGGACGCCTACTCAGGTAGCTAGTCACGCTCAGAAATACTTCCTCCGCCG
EW738884       <-- .....................................tgtcgaTCCGCCG
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> AGGACGCCTACTCAGGTAGCTAGTCACGCTCAGAAATACTTCCTCCGCCG
EV565350       --> AGGACGCCTACTCAGGTAGCTAGTCACGCTCAGAAATACTTCCTCCGCCG
EV566581       --> AGGACGCCTACTCAGGTAGCTAGTCACGCTCAGAAATACTTCCTCCGCCG
EY913351       --> ..................................................

               551    -    601
UN11490        --> GACTAACCTCAACCGTCGCCGGAGAAGATCTAGCCTTTTCGACATCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- GACTAACCTCAACCGTCGCCGGAGAAGATCTAGCCTTTTCGACATCACAA
EV570663       <-- GACTAACCTCAACCGTCGCCGGAGAAGATCTAGCCTTTTCGACATCACAA
EW738884       <-- GACTAACCTCAACCGTCGCCGGAGAAGATCTAGCCTTT-CGGCATCACAA
EV570662       <-- ..................................................
EY909598       <-- ..................................................
EV565349       --> GACTAACCTCAACCGTCGCCGGAGAAGATCTAGCCTTTTCGACATCACAC
EV565350       --> GACTAACCTCAACCGTCGCCGGAGAAGATCTAGCCTTTTCGACATCACAA
EV566581       --> GACTAACCTCAACCGTCGCCGGAGAAGATCTAGCCTTTTCGACATCACAA
EY913351       --> ..................................................

               601    -    651
UN11490        --> CCGAGACCGTCACAGGAATGCACATGGAGCAAGATCAGGGGCATCATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- CCGAGACCGTCACAGGAATGCACATGGAGCAAGATCAGGGGCATCATCCT
EV570663       <-- CCGAGACCGTCACAGGAATGCACATGGAGCAAGATCAGGGGCATCATCCT
EW738884       <-- CCGAGACCGTCACAGGAATGCACATGGAGCAAGATCAGGGGCATCATCCT
EV570662       <-- ..................TGCACATGGAGCAAGATCAGGGGCATCATCCT
EY909598       <-- ..................................................
EV565349       --> CCGAGACCGTCACAGGAATGCACATGGAGCAAGATCAGGGGCATCATCCT
EV565350       --> CCGAGACCGTCACAGGAATGCACATGGAGCAAGATCAGGGGCATCATCCT
EV566581       --> CCGAGACCGTCACAGGAATGCACATGGAGCAAGATCAGGGGCATCATCCT
EY913351       --> ..................................................

               651    -    701
UN11490        --> CAGGACATCTCATCACTACCTGAAACTGATATCAGCTCTGGACAACAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- CAGGACATCTCATCACTACCTGAAACTGATATCAGCTCTGGACAACAAGC
EV570663       <-- CAGGACATCTCATCACTACCTGAAACTGATATCAGCTCTGGACAACAAGC
EW738884       <-- CAGGACATCTCATCACTACCTGAAACTGATATCAGCTCTGGACAACAAGC
EV570662       <-- CAGGACATCTCATCACTACCTGAAACTGATATCAGCTCTGGACAACAAGC
EY909598       <-- ..................................................
EV565349       --> CAG-ACATCTCATCACTACCTGAAACTGATATCAGCTCTGGACA-CA-GC
EV565350       --> CAGGACATCTCATCACTACCTGAAACTGATATCAGCTCTGGACAACAAGC
EV566581       --> CAGGACATCTCATCACTACCTGAAACTGATATCAGCTCTGGACAACAAGC
EY913351       --> ..................................................

               701    -    751
UN11490        --> TATGCAAGTTTTTACTCAAGTTGCGGTGGTGCCGACAAGAACTGAGAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- TATGCAAGTTTTTACTCAAGTTGCGGTGGTGCCGACAAGAACTGAGAACG
EV570663       <-- TATGCAAGTTTTTACTCAAGTTGCGGTGGTGCCGACAAGAACTGAGAACG
EW738884       <-- TATGCAAGTTTTTACTCAAGTTGCGGTGGTGCCGACAAGAACTGAGAACG
EV570662       <-- TATGCAAGTTTTTACTCAAGTTGCGGTGGTGCCGACAAGAACTGAGAACG
EY909598       <-- ...................................gAAGAACTGAGAACG
EV565349       --> TATGCA-GTTTT-ACTCAAGTTGCGGTGGTGC-GACA-GA-CTGAGA-CG
EV565350       --> TATGCAAGTTTTTACTCAAGTTGCGGTGGTGCCGACAAGAACTGAGAACG
EV566581       --> TATGCAAGTTTTTACTCAAGTTGCGGTGGTGCCGACAAGAACTGAGAACG
EY913351       --> ...................................gAAGAACTGAGAACG

               751    -    801
UN11490        --> CACCACAGATTGTCCCAGTAACCTTCCAAGCAAATCCTCCGTTCAATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- CACCACAGATTGTCCCAGTAACCTTCCAAGCAAATCCTCCGTTCAATCTA
EV570663       <-- CACCACAGATTGTCCCAGTAACCTTCCAAGCAAATCCTCCGTTCAATCTA
EW738884       <-- CACCACAGATTGTCCCAGTAACCTTCCAAGCAAATCCTCCGTTCAATCTA
EV570662       <-- CACCACAGATTGTCCCAGTAACCTTCCAAGCAAATCCTCCGTTCAATCTA
EY909598       <-- CACCACAGATTGTCCCAGTAACCTTCCAAGCAAATCCTCCGTTCAATCTA
EV565349       --> CACCACAGATTGT.....................................
EV565350       --> CACCACAGATTGTCCCAGTAACCTTCCAAGCAAATCCTCCGTTCAATCTA
EV566581       --> CACCACAGATTGTCCCAGTAACCTTCCAAGCAAATCCTCCGTTCAATCTA
EY913351       --> CACCACAGATTGTCCCAGTAACCTTCCAAGCAAATCCTCCGTTCAATCTA

               801    -    851
UN11490        --> AACACAGATGCTGCAGAGGTTCCTGCTCCGCTGTCTCTCAACCTTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- AACACAGATGCTGCAGAGGTTCCTGCTCCGCTGTCTCTCAACCTTTCTCT  Raphanus raphanistrum subsp. landra
EV570663       <-- AACACAGATGCTGCAGAGGTTCCTGCTCCGCTGTCTCTCAACCTTTCTCT  Raphanus raphanistrum subsp. landra
EW738884       <-- AACACAGATGCTGCGGAGGTTCCTGTTCCGCTGTCTCTCAACCTTTTTCT  Raphanus sativus cv Rat-Tail Radish #3870
EV570662       <-- AACACAGATGCTGCAGAGGTTCCTGCTCCGCTGTCTCTCAACCTTTCTCT  Raphanus raphanistrum subsp. landra
EY909598       <-- AACACAGATGCTGCGGAGGTTCCTGCTCCGCTGTCTCTCAACCTTTTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565349       --> ..................................................  Raphanus raphanistrum subsp. landra
EV565350       --> AACACAGATGCTGCAGAG-TTCCTGCTCCGCTGTCTCTCAACCTTTCTCT  Raphanus raphanistrum subsp. landra
EV566581       --> AACACAGATGCTGCAGAGGT-CCTGCTCCGCTGTCTCTCAACCT......  Raphanus raphanistrum subsp. landra
EY913351       --> AACACAGATGCTGCGGAGGTTCCTGCTCCGCTGTCTCTCAACCTTTCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               851    -    901
UN11490        --> GTCTTTTAATAACCTCAACGAACAGTCCAACTCAAGACATTCGGCTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- GTCTTTTAATAACCTCAACGAACAGTCCAACTCAAGACATTCGGCTTTCA
EV570663       <-- GTCTTTTAATAACCTCAACGAACAGTCCAACTCAAGACATTCGGCTTTCA
EW738884       <-- GTCTTTTAATAACCTCAACGAACAGTCCAACTCAAGACGTTCGGCTTTCA
EV570662       <-- GTCTTTTAATAACCTCAACGAACAGTCCAACTCAAGACATTCGGCTTTCA
EY909598       <-- GTCTTTTA-TAACCTCAACGAACAGTCCAACTCAAGACATTCGGCTTTCA
EV565349       --> ..................................................
EV565350       --> G.................................................
EV566581       --> ..................................................
EY913351       --> GTCTTTTA-TAACCTCAACGAACAGTCCAACTCAAGACATTCGGCTTTCA

               901    -    951
UN11490        --> CCATGTTGCCAAGCTTCAGTGATGGAGATAGTAATAGCAGCATCATCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- CCATGTTGCCAAGCTTCAGTGATGGAGATAGTAATAGCAGCATCATCAGA
EV570663       <-- CCATGTTGCCAAGCTTCAGTGATGGAGATAGTAATAGCAGCATCATCAGA
EW738884       <-- CCATGTTGCCAAGCTTCAGTGATGGAGATAGTAATAGCAGCATCATCAGA
EV570662       <-- CCATGTTGCCAAGCTTCAGTGATGGAGATAGTAATAGCAGCATCATCAGA
EY909598       <-- CCATGTTGCCAAGCTTCAGTGATGGAGATAGTAATGGCAGCATCATCAGA
EV565349       --> ..................................................
EV565350       --> ..................................................
EV566581       --> ..................................................
EY913351       --> CCATGTTGCCAAGCTTCAGTGATGGAGATAGTAATGGCAGCATCATCAGA

               951    -   1001
UN11490        --> GTTGCTTAGACTTAAAAGCCAAGGCCTTACTTTTGTCTTGGAAAAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- GTTGCTTAGACTTAAAAGCCAAGGCCTTACTTTTGTCTTGGAAAAAAAGA  Raphanus raphanistrum subsp. landra
EV570663       <-- GTTGCTTAGACTTAAAAGCCAAGGCCTTACTTTTGTCTTGGAAAAAAAGA  Raphanus raphanistrum subsp. landra
EW738884       <-- GTTGCTTAGACCTAAAAGCCAAGGCCTTACTTTTGTCTTGGAAAAAAAGA  Raphanus sativus cv Rat-Tail Radish #3870
EV570662       <-- GTTGCTTAGACTTAAAA.................................  Raphanus raphanistrum subsp. landra
EY909598       <-- GTTGCTTAGACCTAAAAGCCAAGGCCTTACTTTTGTCTTGGAAAAAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565349       --> ..................................................  Raphanus raphanistrum subsp. landra
EV565350       --> ..................................................  Raphanus raphanistrum subsp. landra
EV566581       --> ..................................................  Raphanus raphanistrum subsp. landra
EY913351       --> GTTGCTTAGACCTAAAAGCCAAGGCCTTACTTTTGTCTTGGAAAAAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               1001   -   1051
UN11490        --> ACAATCAGGGGAAAAAAGAACAATAACAACAGAGGAAGGGGGCTTTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ACAATCAGGGGAAAAAAGAACTATAACAACAGAGGAAGGGGGCTTTAGAG
EV570663       <-- ACAATCAGGGGAAAAAAGAACTATAACAACAGAGGAAGGGGGCTTTAGAG
EW738884       <-- ACAATCAGGGGAAAAAAGAACAATAACAACAGAGGAAGGGGGCTTTAGAG
EV570662       <-- ..................................................
EY909598       <-- ACAATCAGGGGAAAAAAGAACAATAACAACAGAGGAAGGGGGCTTTAGAG
EV565349       --> ..................................................
EV565350       --> ..................................................
EV566581       --> ..................................................
EY913351       --> ACAATCAGGGGAAAAAAGAACAATAACAACAGAGGAAGGGGGCTTTAGAG

               1051   -   1101
UN11490        --> ATGGACGAACTGTTGTTTAGGGGTTCTTCATCATCTATGTTTTGTATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ATGGACGAACTGTTGTTTAGGGGTTCTTCATCATCTATGTTTTGTATTGT
EV570663       <-- ATGGACGAACTGTTGTTTAGGGGTTCTTCATCATCTATGTTTTGTATTGT
EW738884       <-- ATGGACGAACTGTTGTTTAGGGGTTCTTCATCATCTATGTTTTGTATTGT
EV570662       <-- ..................................................
EY909598       <-- ATGGACGAACTGTTGTTTAGGGGTTCTTCATCATCTATGTTTTGTATTGT
EV565349       --> ..................................................
EV565350       --> ..................................................
EV566581       --> ..................................................
EY913351       --> ATGGACGAACTGTTGTTTAGGGGTTCTTCATCATCTATGTTTTGTATTGT

               1101   -   1151
UN11490        --> TTGTATTGTTTGTAAAACTCTGCTCTCTCCGTATGTGTGGTTTGTTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- TTGTATTGTTTGTAAAACTCTGCTCTCTCCGTATGTGTGGTTTGTTTTGT
EV570663       <-- TTGTATTGTTTGTAAAACTCTGCTCTCTCCGTATGTGTGGTTTGTTTTGT
EW738884       <-- TTGTATTGTTTGTAAAACTCTGCTCTCTCCGTATGTGTGGTTTGTTTTGT
EV570662       <-- ..................................................
EY909598       <-- TTGTATTGTTTGTAAAACTCTGCTCTCTCCGTATGTGTGGTTTGTTTTGT
EV565349       --> ..................................................
EV565350       --> ..................................................
EV566581       --> ..................................................
EY913351       --> TTGTATTGTTTGTAAAACTCTGCTCTCTCCGTATGTGTGGTTTGTTTTGT

               1151   -   1201
UN11490        --> GGTATGTAAGTTAAAAGAAGGTGTGACTCTCTCCTGTTGCCCATCTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- GGTATGTAAGTTAAAAGAAGGTGTGACTCTCTC.................
EV570663       <-- GGTATGTAAGTTAAAAGAAGGTGTGACTCTCTC.................
EW738884       <-- GGTATGTAAGTTAAAAGAAGGTGTGACTCTCTCCTGTTGCCCATCTCAAT
EV570662       <-- ..................................................
EY909598       <-- GGTATGTAAGTTAAAAGAAGGTGTGACTCTCTCCTGTTGCCCATCTCAAT
EV565349       --> ..................................................
EV565350       --> ..................................................
EV566581       --> ..................................................
EY913351       --> GGTATGTAAGTTAAAAGAAGGTGTGACTCTCTCCTGTTGCCCATCTCAAT

               1201   -   1251
UN11490        --> CAATGGTTGGTGAATTATGGGGCTTTTGCTATATCTTATCTTTTGGGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ..................................................
EV570663       <-- ..................................................
EW738884       <-- CAATGGTTGGTGAATTATGGGGCc..........................
EV570662       <-- ..................................................
EY909598       <-- CAATGGTTGGTGAATTATGGGGCTTTTGCTATATCTTATCTTTTGGGGAT
EV565349       --> ..................................................
EV565350       --> ..................................................
EV566581       --> ..................................................
EY913351       --> CAATGGTTGGTGAATTATGGGGCTTTTGCTATATCTTATCTTTTGGGGAT

               1251   -   1301
UN11490        --> AAGCTAAAATGTATGTATGTGGTTCATCGAATATCTTATCAGGATCACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ..................................................
EV570663       <-- ..................................................
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- AAGCTAAAATGTATGTATGTGGTTCATCGAATATCTTATCAGGATCACCC
EV565349       --> ..................................................
EV565350       --> ..................................................
EV566581       --> ..................................................
EY913351       --> AAGCTAAAATGTATGTATGTGGTTCATCGAATATCTTATCAGGATCACCC

               1301   -   1351
UN11490        --> TTTAATACCATAATAATGTAATGTTGCCACTTCGACTTTTTGATGGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571680       <-- ..................................................
EV570663       <-- ..................................................
EW738884       <-- ..................................................
EV570662       <-- ..................................................
EY909598       <-- TTTAATACCATAATAATGTAATGTTGCCACTTCGACTTTTTGATGGATTT
EV565349       --> ..................................................
EV565350       --> ..................................................
EV566581       --> ..................................................
EY913351       --> TTTAATACCATAATAATGTAATGTTGCCACTTCGACTTTTTGATGGATTT

               1351   -   1401
UN11490        --> TTGTTTTATTAC
                   ~~~~~~~~~~~~
EV571680       <-- ............
EV570663       <-- ............
EW738884       <-- ............
EV570662       <-- ............
EY909598       <-- TTGTTTTATTAC
EV565349       --> ............
EV565350       --> ............
EV566581       --> ............
EY913351       --> TTGTTTTATTAC