1      -     51
UN11511        --> GCCATACGGCCGGGGGGGTCGTCGTCT-GTTTGATTGATCTTTAGAAA-T
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- ..................................................
EV571232       <-- ..................................................
EV566008       --> GCCATACGGCCGGGGGGGTCGTCGTCT-GTTTGATTGATCTTTAGAAA-T
EV565818       --> ...............GGGTCGTCGTCT-GTTTGATTGATCTTTAGAAA-T
EY933299       --> ...............GGGTCGTCGTCT-GTTTGATTGATCTTAAGAAT-T
FD533785       --> ...............GGGTCGTCGTCTTGTTTGATTGATCTTTAGAAAAT
FD938349       --> ...............GGGTCGTCGTCT-GTTTGATTGATCTTAAGAAT-T
FD962031       --> ...............GGGTCGTCGTCTTGTTTGATTGATCTTTAGAAAAT

               51     -    101
UN11511        --> CGGAAATGGCAGAGTCGAGGGTTGTAGTTCCGGAGTCAGTCCTGAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- ..................................................
EV571232       <-- ..................................................
EV566008       --> CGGAAATGGCAGAGTCGAGGGTTGTAGTTCCGGAGTCAGTCCTGAAGAAG
EV565818       --> CGGAAATGGCAGAGTCGAGGGTTGTAGTTCCGGAGTCAGTCCTGAAGAAG
EY933299       --> CGGAAATGGCAGAGTCGAGGGTTGTAGTTCCGGAGTCAGTCCTGAAGAAG
FD533785       --> CGGAAATGGCAGAGTCGAAGGTTGTAGTTCCGGAGTCAGTCCTGAAGAAG
FD938349       --> CGGAAATGGCAGAGTCGAGGATCGTAGTTCCGGAGTCAGTCCTGAAGAAG
FD962031       --> CGGAAATGGCAGAGTCGAAGGTTTTAGTTCCGGAGTCAGTCCTGAAGAAG

               101    -    151
UN11511        --> AGGAAGAGAGAGGAGGAGTGGGCTCTCGAGAAGAAGCAGAGCGCTGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- .................................gAGCAGAGCGCTGAAGC
EV571232       <-- ..................................................
EV566008       --> AGGAAGAGAGAGGAGGAGTGGGCTCTCGAGAAGAAGCAGAGCGCTGAAGC
EV565818       --> AGGAAGAGAGAGGAGGAGTGGGCTCTCGAGAAGAAGCAGGGCGCTGAAGC
EY933299       --> AGGAAGAGAGAGGAGGAGTGGGCTCTCGAGAAGAAGCAGAGCGCTGAAGC
FD533785       --> AGGAAGAGAGAGGAGGAGTGGGCTCTCGAGAAGAAGCAGAGCGCTGAAGC
FD938349       --> AGGAAGAGAGAGGAGGAGTGGGCTCTCGAGAAGAAGCAGAGCGCTGAAGC
FD962031       --> AGGAAGAGAGAGGAGGAGTGGGCTCTCGAGAAGAAGCAGAGCGCTGAAGC

               151    -    201
UN11511        --> CGCCAAGAAGACGAACGCC-GCCAACAGGAAGGTTATCTACAAAAGAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- CGCCAAGAAGACGAACGCCCCCCAACAGGAAGGTTATCTACAAAAGAGCC
EV571232       <-- ..................................................
EV566008       --> CGCCAATAAGACGAACGCC-GCCAACAGGAAGGTTATCTACAAAAGAGCC
EV565818       --> CGCCAAGAAGACGAACGCC-GCCAACAGGAAGGTTATCTACAAAAGAGCC
EY933299       --> TGCCAAGAAGACGAACGCC-GCCAACAGGAAGGTTATCTACAAAAGAGCC
FD533785       --> CGCCAAGAAGACGAACGCC-GCCAACAGGAAGGTTATCTACAAAAGAGCC
FD938349       --> TGCCAAGAAGACGAACGCC-GCCAACAGGAAGGTTATCTACAAAAGAGCC
FD962031       --> CGCCAAGAAGACGAACGCC-GCCAACAGGAAGGTTATCTACAAAAGAGCC

               201    -    251
UN11511        --> GAGCAGTACGCCAAGGAGTATGCCGAGAAGGAGAAGGAGTTGATCTCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- GAGCAGTACGCCAAGGAGTATGCCGAGAAGGAGAAGGAGTTGATCTCATT
EV571232       <-- ..................................................
EV566008       --> GAGCAGTACGCCAAGGAGTATGCCGAGAAGGAGAAGGAGTTGATCTCATT
EV565818       --> GAGCAGTACGCCAAGGAGTATGCCGAGAAGGAGAAGGAGTTGATCTCATT
EY933299       --> GAGCAGTACGCCAAGGAGTATGCCGAGAAGGAGAAGGAGTTGATCTCATT
FD533785       --> GAGCAGTACGCCAAGGAGTATGCCGAGAAGGAGAAGGAGTTGATCTCATT
FD938349       --> GAGCAGTACGCCAAGGAGTATGCCGAGAAGGAGAAGGAGTTGATCTCATT
FD962031       --> GAGCAGTACGCCAAGGAGTATGCCGAGAAGGAGAAGGAGTTGATCTCATT

               251    -    301
UN11511        --> GAAACGTGAGGCTAAGCTTAAGGGAGGTTTCTATGTCGACCCTGAAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- GAAACGTGAGGCTAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTA  Raphanus raphanistrum subsp. landra
EV571232       <-- .............................................AGCTA  Raphanus raphanistrum subsp. landra
EV566008       --> GAAACGTGAGGCTAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTA  Raphanus raphanistrum subsp. landra
EV565818       --> GAAACGTGAGGCTAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTA  Raphanus raphanistrum subsp. landra
EY933299       --> GAAACGTGAGGCTAAGCTTAAGGGAGGTTTCTATGTCGACCCTGAAGCTA  Raphanus sativus var. oleiformis
FD533785       --> GAAACGTGAGGCTAAGCTTAAGGGAGGTTTCTATGTCGACCCTGAAGCTA  Raphanus raphanistrum subsp. maritimus
FD938349       --> GAAACGTGAGGCTAAGCTTAAGGGAGGTTTCTATGTCGACCCTGAAGCTA  Raphanus sativus var. oleiformis
FD962031       --> GAAACGTGAGGCTAAGCTTAAGGGAGGTTTCTATGTCGACCCTGAAGCTA  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN11511        --> AGCTCTTGTTCATCATCCGTATTCGTGGTATCAATGCCATTGACCCGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- AGCTCTTGTTCATCATCCGTATTCGTGGTATCAATGCCATTGACCCGAAG
EV571232       <-- AGCTCTTGTTCATCATCCGTATTCGTGGTATCAATGCCATTGACCCGAAG
EV566008       --> AGCTCTTGTTCATCATCCGTATTCGTGGTATCAATGCCATTGACCCGAAG
EV565818       --> AGCTCTTGTTCATCATCCGTATTCGTGGTATCAATGCCATTGACCCGAAG
EY933299       --> AGCTCTTGTTCATCATCCGTATTCGTGGTATCAATGCCATTGACCCGAAG
FD533785       --> AGCTCTTGTTCATCATCCGTATTCGTGGTATCAATGCCATTGACCCGAAG
FD938349       --> AGCTCTTGTTCATCATCCGTATTCGTGGTATCAATGCCATTGACCCGAAG
FD962031       --> AGCTCTTGTTCATCATCCGTATTCGTGGTATCAATGCCATTGACCCGAAG

               351    -    401
UN11511        --> ACTAAGAAGATTCTTCAGCTCTTGCGTTTGAGACAGATATTCAACGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- ACTAAGAAGATTCTTCAGCTCTTGCGTTTGAGACAGATATTCAACGGTGT
EV571232       <-- ACTAAGAAGATTCTTCAGCTCTTGCGTTTGAGACAGATATTCAACGGTGT
EV566008       --> ACTAAGAAGATTCTTCAGCTCTTGCGTTTGAGACAGATATTCAACGGTGT
EV565818       --> ACTAAGAAGATTCTTCAGCTCTTGCGTTTGAGACAGATATTCAACGGTGT
EY933299       --> ACTAAGAAGATTCTTCAGCTCTTGCGTTTGAGACAGATATTCAACGGTGT
FD533785       --> ACTAAGAAGATTCTTCAGCTCTTGCGTTTGAGACAGATATTCAACGGTGT
FD938349       --> ACTAAGAAGATTCTTCAGCTCTTGCGTTTGAGACAGATATTCAACGGTGT
FD962031       --> ACTAAGAAGATTCTTCAGCTCTTGCGTTTGAGACAGATATTCAACGGTGT

               401    -    451
UN11511        --> GTTTCTCAAAGTTAACAAAGCTACAATGAACATGCTTCGTCGTGTTGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- GTTTCTCAAAGTTAACAAGGCTACAATGAACATGCTTCGTCGTGTTGAGC  Raphanus raphanistrum subsp. landra
EV571232       <-- GTTTCTCAAAGTTAACAAGACTACAATGAACATGCTTCGTCGTGTTGAGC  Raphanus raphanistrum subsp. landra
EV566008       --> GTTTCTCAAAGTTAACAAGACTACAATGAACATGCTTCGTCGTGTTGAGC  Raphanus raphanistrum subsp. landra
EV565818       --> GTTTCTCAAAGTTAACAAGGCTACAATGAACATGCTTCGTCGTGTTGAGC  Raphanus raphanistrum subsp. landra
EY933299       --> GTTTCTCAAAGTTAACAAAGCTACAATGAACATGCTTCGTCGTGTTGAGC  Raphanus sativus var. oleiformis
FD533785       --> GTTTCTCAAAGTTAACAAAGCTACAATGAACATGCTTCGTCGTGTTGAGC  Raphanus raphanistrum subsp. maritimus
FD938349       --> GTTTCTCAAAGTTAACAAAGCTACAATGAACATGCTTCGTCGTGTTGAGC  Raphanus sativus var. oleiformis
FD962031       --> GTTTCTCAAAGTTAACAAAGCTACAATGAACATGCTTCGTCGTGTTGAGC  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN11511        --> CTTACGTGACTTACGGGTTCCCCAATTTGAAGAGTGTTAAGGAATTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- CTTACGTGACTTACGGGTTCCCCAATTTGAAGAGTGTTAAGGAATTGATC  Raphanus raphanistrum subsp. landra
EV571232       <-- CTTACGTGACTTACGGGTTCCCCAATTTGAAGAGTGTTAAGGAATTGATC  Raphanus raphanistrum subsp. landra
EV566008       --> CTTACGTGACTTACGGGTTCCCCAATTTGAAGAGTGTTAAGGAATTGATC  Raphanus raphanistrum subsp. landra
EV565818       --> CTTACGTGACTTACGGGTTCCCCAATTTGAAGAGTGTTAAGGAATTGATC  Raphanus raphanistrum subsp. landra
EY933299       --> CATACGTGACTTACGGGTTCCCCAATTTGAAGAGTGTTAAGGAATTGATC  Raphanus sativus var. oleiformis
FD533785       --> CATACGTGACTTACGGGTTCCCCAATTTGAAGAGTGTTAAGGAATTGATC  Raphanus raphanistrum subsp. maritimus
FD938349       --> CATACGTGACTTACGGGTTCCCCAATTTGAAGAGTGTTAAGGAATTGATC  Raphanus sativus var. oleiformis
FD962031       --> CATACGTGACTTACGGGTTCCCCAATTTGAAGAGTGTTAAGGAATTGATC  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN11511        --> TACAAGAGAGGATACGGAAAGCTTAACCACCAGAGGGTGGCTTTGACTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- TACAAGAGAGGATACGGAAAGCTTAACCACCAGAGGGTGGCTTTGACTGA
EV571232       <-- TACAAGAGAGGATACGGAAAGCTTAACCACCAGAGGGTGGCTTTGACTGA
EV566008       --> TACAAGAGAGGATACGGAAAGCTTAACCACCAGAGGGTGGCTTTGACTGA
EV565818       --> TACAAGAGAGGATACGGAAAGCTTAACCACCAGAGGGTGGCTTTGACTGA
EY933299       --> TACAAGAGAGGATACGGAAAGCTTAACCACCAGAGGGTGGCTTTGACTGA
FD533785       --> TACAAGAGAGGATACGGAAAGCTTAACCACCAGAGGGTGGCTTTGACTGA
FD938349       --> TACAAGAGAGGATACGAAAAGCTTAACCACCAGAGGGTGGCTTTGACTGA
FD962031       --> TACAAGAGAGGATACGGAAAGCTTAACCACCAGAGGGTGGCTTTGACTGA

               551    -    601
UN11511        --> CAACTCTATCGTAGAGCAGGCTCTAGGTAAACATGGGATCATCTGCACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- CAACTCTATCGTAGAGCAGGCTCTAGGTAAACATGGGATCATCTGCACTG
EV571232       <-- CAACTCTATCGTAGAGCAGGCTCTAGGTAAACATGGGATTATCTGCACTG
EV566008       --> CAACTCTATCGTAGAGCAGGCTCTAGGTAAACATGGGATTATCTGCACTG
EV565818       --> CAACTCTATCGTAGAGCAGGCTCTAGGTAAACATGGGATCATCTGCACTG
EY933299       --> CAACTCTATCGTAGAGCAGGCTCTAGGTAAACATGGGATCATCTGCACTG
FD533785       --> CAACTCTATCGTAGA...................................
FD938349       --> CAACTCTATCGTAGAGCAGGCTCTAGGTAAACATGGGATCATCTGCACTG
FD962031       --> CAACTCTATCGTAGAGCAGGCTCTAGGTAAACATGGGATCATCTGCACTG

               601    -    651
UN11511        --> AGGATTTGATCCACGAGATTCTAACAGTTGGACCTCATTTCAAGGAGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- AGGATTTGATCCACGAGATTCTAACAGTTGGACCTCATTTCAAGGAGGCC
EV571232       <-- AGGATTTGATCCACGAGATTCTAACAGTTGGACCTCATTTCAAGGAGGCC
EV566008       --> AGGATTTGATCCACGAGATTCTAACAGTTGGACCTCATTTCAAGGAGGCC
EV565818       --> AGGATTTGATCCACGAGATTCTAACGGTTGGACCTCATTTCAAGGAGGCC
EY933299       --> AGGATTTGATCCACGAGATTCTAACAGTTGGACCTCATTT..........
FD533785       --> ..................................................
FD938349       --> AGGATTTGATCCACGAGATTCTAACAGTTGGAC.................
FD962031       --> AGGATTTGATCCACGAGATTCTAACAGTTGGACCTCATTTCAAGGAGGCC

               651    -    701
UN11511        --> AACAACTTCTTGTGGCCATTCCAACTCAAGGCACCGCTCGGTGGCCTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- AACAACTTCTTGTGGCCATTCCAACTCAAGGCACCGCTCGGTGGCCTTAA
EV571232       <-- AACAACTTCTTGTGGCCATTCCAACTCAAGGCACCGCTCGGTGGCCTTAA
EV566008       --> AACAACTTCTTGTGGCCATTCCAACTCAAGGCACCGCTCGGTGGCCTTAA
EV565818       --> AACAACTTCTTGTGGCCATTCCAACTCAAGGCACCGCTCGGTGGCCTTAA
EY933299       --> ..................................................
FD533785       --> ..................................................
FD938349       --> ..................................................
FD962031       --> AACAACTTCCTGTGGCCATTCCAACT........................

               701    -    751
UN11511        --> GAAGAAGAGAAACCACTACGTTGAAGGTGGTGATGCTGGAAACCGTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- GAAGAAGAGAAACCACTACGTTGAAGGTGGTGATGCTGGAAACCGTGAAA
EV571232       <-- GAAGAAGAGAAACCACTACGTTGAAGGTGGTGATGCTGGAAACCGTGAAA
EV566008       --> GAAGAAGAGAAACCACTACGTTGAAG-TGGTGATGCTGGAAACCGTGAAA
EV565818       --> GAAGAAGAGAAACCACTACGTTGAAGGTGGTGATGCTGGAAACCGTGAAA
EY933299       --> ..................................................
FD533785       --> ..................................................
FD938349       --> ..................................................
FD962031       --> ..................................................

               751    -    801
UN11511        --> ACTTCATCAACGAGCTTATCAGGAGAATGAATTAGATGTTTTCCTTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- ACTTCATCAACGAGCTTATCAGGAGAATGAATTAGATGTTTTCCTTTCCA
EV571232       <-- ACTTCATCAACGAGCTTATCAGGAGAATGAATTAGATGTTTTCCTTTCCA
EV566008       --> ACTTCATCAACGAGCTTATCAG-AG-ATGAATTAGATGTTTTCCTTTCCA
EV565818       --> ACTTCATCAACGAGCTTATCAGGAGAATGAATTAGATGTTTTCCTTTCCA
EY933299       --> ..................................................
FD533785       --> ..................................................
FD938349       --> ..................................................
FD962031       --> ..................................................

               801    -    851
UN11511        --> GCTTATCAGGAGAATGATTTAGATGTTTTCCTTTCCAATCAGTCTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- GCTTATCAGGAGAATGATTTAGATGTTTTCCTTTCCAATCAGTCTTTTTT
EV571232       <-- GCTTATCAGGAGAATGATTTAGATGTTTTCCTTTCCAATCAGTCTTTTTT
EV566008       --> GCTTATCAG-AG-ATGATTTAGATGTTTTCCTTTC...............
EV565818       --> GCTTATCAGGAGAATGATTTAGATGTTTTCCTTTCCAATCAGTCTTTTTT
EY933299       --> ..................................................
FD533785       --> ..................................................
FD938349       --> ..................................................
FD962031       --> ..................................................

               851    -    901
UN11511        --> TTATCTATGTTGTCTTCACCAAATGCTTCCTCCTGGATTTTGATCTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- TTATCTATGTTGTCTTCACCAAATGCTTCCTCCTGGATTTTGATCTTTTT
EV571232       <-- TTATCTATGTTGTCTTCACCAAATGCTTCCTCCTGGATTTTGATCTTTTT
EV566008       --> ..................................................
EV565818       --> Ta................................................
EY933299       --> ..................................................
FD533785       --> ..................................................
FD938349       --> ..................................................
FD962031       --> ..................................................

               901    -    951
UN11511        --> GTTCAAGTTAAAAGATATTTTGAGCTTTCTCTTTTATTGTCTTTGGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983362       <-- GTTCAAGTTAAAAGATATTTTGAGCTTTCTCTTTTg..............
EV571232       <-- GTTCAAGTTAAAAGATATTTTGAGCTTTCTCTTTTATTGTCTTTGGATCA
EV566008       --> ..................................................
EV565818       --> ..................................................
EY933299       --> ..................................................
FD533785       --> ..................................................
FD938349       --> ..................................................
FD962031       --> ..................................................

               951    -   1001
UN11511        --> TAGTTTG
                   ~~~~~~~
FD983362       <-- .......
EV571232       <-- TAGTTTG
EV566008       --> .......
EV565818       --> .......
EY933299       --> .......
FD533785       --> .......
FD938349       --> .......
FD962031       --> .......