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Alignment for radish unigene UN11599

               1      -     51
UN11599        --> GGAGTTTATGCACAAAGGTAGTCTTGAGGATCATCTGTTCACAAGAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- ..................................................
EV532352       <-- ..................................................
FD958733       <-- ..................................................
FD555276       <-- ..................................................
FD962119       --> GGAGTTTATGCACAAAGGTAGTCTTGAGGATCATCTGTTCACAAGAGCTG
EV524665       --> ..................................................
EV528324       --> ..................................................
FD551543       --> ..................................................
FD986954       --> ..................................................
FD987034       --> ..................................................

               51     -    101
UN11599        --> GTGTGAAGTGTAATTCTCTCTCTTGGACCTTACGAGTTAAGGTTGCGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- .............................................CGCTT
EV532352       <-- ..................................................
FD958733       <-- ..................................................
FD555276       <-- ..................................................
FD962119       --> GTGTGAAGTGTAATTCTCTCTCTTGGACCTTACGAGTTAAGGTTGCGCTT
EV524665       --> ....GAAGTGTAATTCTCTCTCTTGGACCTTACGAGTTAAGGTTGCGCTT
EV528324       --> ....GAAGTGTAATTCTCTCTCTTGGACCTTACGAGTTAAGGTTGCGCTT
FD551543       --> ..................................................
FD986954       --> ..................................................
FD987034       --> ..................................................

               101    -    151
UN11599        --> GATGCAGCTAAAGGTTTAGCTTTCCTTCATAGTGACCCTGTCAAAGTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- GATGCAGCTAAAGGTTTAGCTTTCCTTCATAGTGACCCTGTCAAAGTCAT
EV532352       <-- ............................ATAGTGACCCTGTCAAAGTCAT
FD958733       <-- .........................................CAAAGTCAT
FD555276       <-- ..................................................
FD962119       --> GATGCAGCTAAAGGTTTAGCTTTCCTTCATAGTGACCCTGTCAAAGTCAT
EV524665       --> GATGCAGCTAAAGGTTTAGCTTTCCTTCATAGTGACCCTGTCAAAGTCAT
EV528324       --> GATGCAGCTAAAGGTTTAGCTTTCCTTCATAGTGACCCTGTCAAAGTCAT
FD551543       --> .....................gTCCTTCATAGTGACCCTGTTAAAGTCAT
FD986954       --> ................................................gT
FD987034       --> ................................................gT

               151    -    201
UN11599        --> ATACCGAGACATCAAGGCCTCCAACATCTTGCTCGACTCGGACTTCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- ATACCGAGACATCAAGGCCTCCAACATCTTGCTCGACTCGGACTTCAATG
EV532352       <-- ATACCGAGACATCAAGGCCTCCAACATCTTGCTCGACTCGGACTTCAATG
FD958733       <-- ATACCGAGACATCAAGGCCTCCAACATCTTGCTCGACTCGGACTTCAATG
FD555276       <-- ....................CCAACATCTTGCTCGACTCGGACTTCAATG
FD962119       --> ATACCGAGACATCAAGGCCTCCAACATCTTGCTCGACTCGGACTTCAATG
EV524665       --> ATACCGAGACATCAAGGCCTCCAACATCTTGCTCGACTCGGACTTCAATG
EV528324       --> ATACCGAGACATCAAGGCCTCCAACATCTTGCTCGACTCGGACTTCAATG
FD551543       --> ATACCGAGACATCAAGGCCTCCAACATCTTGCTTGACTCGGACTTCAATG
FD986954       --> ATACCGAGACATCAAGGCCTCCAACATCTTGCTCGACTCGGACTTCAATG
FD987034       --> ATACCGAGACATCAAGGCCTCCAACATCTTGCTCGACTCGGACTTCAATG

               201    -    251
UN11599        --> GAAAACTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- GAAAACTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAAACA
EV532352       <-- GAAAACTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAAACA
FD958733       <-- GAAAACTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAAACA
FD555276       <-- GAAAACTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAAACA
FD962119       --> GAAAACTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAAACA
EV524665       --> GAAAACTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAAACA
EV528324       --> GAAAACTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAAACA
FD551543       --> GAAAACTTTCAGACTTTGGGTTAGCAAGAGACGGTCCGATGGGAGAAACA
FD986954       --> GAAAACTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAAACA
FD987034       --> GAAAACTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAAACA

               251    -    301
UN11599        --> AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGCTATGCTGCTCCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGCTATGCTGCTCCTGA
EV532352       <-- AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGCTATGCTGCTCCTGA
FD958733       <-- AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGCTATGCTGCTCCTGA
FD555276       <-- AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGCTATGCTGCCCCTGA
FD962119       --> AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGCTATGCTGCTCCTGA
EV524665       --> AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGCTATGCTGCTCCTGA
EV528324       --> AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGCTATGCTGCTCCTGA
FD551543       --> AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGGTATGCTGCTCCTGA
FD986954       --> AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGCTATGCTGCTCCTGA
FD987034       --> AGCTATGTTAGTACAAGAGTCATGGGTACATTTGGCTATGCTGCTCCTGA

               301    -    351
UN11599        --> GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG
EV532352       <-- GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG
FD958733       <-- GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG
FD555276       <-- GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG
FD962119       --> GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG
EV524665       --> GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG
EV528324       --> GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG
FD551543       --> GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG
FD986954       --> GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG
FD987034       --> GTATGTGTCCACAGGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCG

               351    -    401
UN11599        --> GGGTTGTGCTTCTAGAACTACTATCAGGAAGGCGAGCATTGGACCATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- GGGTTGTGCTTCTAGAACTACTATCAGGAAGGCGAGCATTGGACCATAAC
EV532352       <-- GGGTTGTGCTTCTAGAACTACTATCAGGAAGGCGAGCATTGGACCATAAC
FD958733       <-- GGGTTGTGCTTCTAGAACTACTATCAGGAAGGCGAGCATTGGACCATAAC
FD555276       <-- GGGTTGTGCTTCTAGAACTACTATCAGGAAGGCGAGCATTGGACCATAAC
FD962119       --> GGGTTGTGCTTCTAGAACTACTATCAGGAAGGCGAGCATTGGACCATAAC
EV524665       --> GGGTTGTGCTTCTAGAACTACTATCAGGAAGGCGAGCATTGGACCATAAC
EV528324       --> GGGTTGTGCTTCTAGAACTACTATCAGGAAGGCGAGCATTGGACCATAAC
FD551543       --> GGGTTGTGCTTCTAGAACTACTATCTGGAAGGCGAGCATTGGACCATAAC
FD986954       --> GGGTTGTGCTTCTAGAACTACTATCAGGAAGGCGAGCATTGGACCATAAC
FD987034       --> GGGTTGTGCTTCTAGAACTACTATCAGGAAGGCGAGCATTGGACCATAAC

               401    -    451
UN11599        --> CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC
EV532352       <-- CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC
FD958733       <-- CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC
FD555276       <-- CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC
FD962119       --> CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC
EV524665       --> CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC
EV528324       --> CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC
FD551543       --> CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC
FD986954       --> CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC
FD987034       --> CGACCAGCCAGGGAGCACAACCTTGTGGACTGGGCTAGACCGTACCTCAC

               451    -    501
UN11599        --> AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT
EV532352       <-- AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT
FD958733       <-- AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT
FD555276       <-- AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT
FD962119       --> AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT
EV524665       --> AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT
EV528324       --> AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT
FD551543       --> AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT
FD986954       --> AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT
FD987034       --> AAGCAGGCGAAAGGTTCTACTAATTGTGGACTCTCGTCTTGAGTCACAGT

               501    -    551
UN11599        --> ACAAACCTGAAGAGGCAGTGAGATTGGCAAGCATTGCTGTGCAGTGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- ACAAACCTGAAGAGGCAGTGAGATTGGCAAGCATTGCTGTGCAGTACATC
EV532352       <-- ACAAACCTGAAGAGGCAGTGAGATTGGCAAGCATTGCTGTGCAGTACATC
FD958733       <-- ACAAACCTGAAGAGGCAGTGAGATTGGCAAGCATTGCTGTGCAGTGCATC
FD555276       <-- ---ACCCTGAAGAGGCAGTGAGATTGGCAAGCATTGCTGTGCAGTGCATC
FD962119       --> ACAAACCTGAAGAGGCAGTGAGATTGGCAAGCATTGCTGTGCAGTGCATC
EV524665       --> ACAAACCTGAAGAGGCAGTGAGATTGGCAAGCATTGCTGTGCAGTACATC
EV528324       --> ACAAACCTGAAGAGGCAGTGAGATTGGCAAGCATTGCTGTGCAGTACATC
FD551543       --> ACAAACCTGAAGAAGCAGTGAGATTGGCGAGCATTGCTGTGCAGTGCATC
FD986954       --> ACAAACCTGAAGAGGCAGTGAGATTGGCAAGCATTGCTGTGCAGTGCATC
FD987034       --> ACAAACCTGAAGAGGCAGTGAGATTGGCAAGCATTGCTGTGCAGTGCATC

               551    -    601
UN11599        --> TCGTCTGAACCTAAGTCGAGACCGACCATGGACCAAGTGGTCAGAGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- TCGTCTGAACCTAAGTCGAGACCGACCATGGACCAAGTGGTCAGAGCCTT  Raphanus raphanistrum subsp. maritimus
EV532352       <-- TCGTCTGAACCTAAGTCGAGACCGACCATGGACCAAGTGGTCAGAGCCTT  Raphanus raphanistrum subsp. maritimus
FD958733       <-- TCGTCTGAACCTAAGTCGAGACCGACCATGGACCA-TTGGTCAGAGCCTT  Raphanus raphanistrum subsp. maritimus
FD555276       <-- TCGTCTGAACCCAAGTCAAGACCGACCATGGACCAAGTGGTCAGAGCCTT  Raphanus raphanistrum subsp. landra
FD962119       --> TCGTCTGAACCTAAGTCGAGACCGACCATGGACCA-TTGGTCAGAGCCTT  Raphanus raphanistrum subsp. maritimus
EV524665       --> TCGTCTGAACCTAAGTCGAGACCGACCATGGACCAAGTGGTCAGAGCCTT  Raphanus raphanistrum subsp. maritimus
EV528324       --> TCGTCTGAACCTAAGTCGAGACCGACCATGGACCAAGTGGTCAGAGCCTT  Raphanus raphanistrum subsp. maritimus
FD551543       --> TCGCCTGAACCCAAGTCAAGACCGACCATGGACCAAGTGGTCAGAGCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986954       --> TCGTCTGAACCCAAGTCAAGACCGACCATGGACCAAGTGGTCAGAGCCTT  Raphanus raphanistrum subsp. landra
FD987034       --> TCGTCTGAACCCAAGTCAAGACCGACCATGGACCAAGTGGTCAGAGCCTT  Raphanus raphanistrum subsp. landra

               601    -    651
UN11599        --> GTTACAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGATCCGGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- GTTACAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGATCCGGGTA
EV532352       <-- GTTACAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGATCCGGGTA
FD958733       <-- GTTACAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGATCCGGGTA
FD555276       <-- GTTACAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGATCCGGGTA
FD962119       --> GTTACAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGATCCGGGTA
EV524665       --> GTTACAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGATCCGGGTA
EV528324       --> GTTACAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGATCCGGGTA
FD551543       --> GTTGCAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGACCCGGGTA
FD986954       --> GTTACAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGATCCGGGTA
FD987034       --> GTTACAACTGCAGGAAAGTATGGCTAAACGGGCTAAAGTTGATCCGGGTA

               651    -    701
UN11599        --> AAGATACCAAGAAGGTTGTGGGAGTGAAAACGGAAGACAAGTACGAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- AAGGTACCAAGAAGGTTGTGGGAGTGAAAACGGAAGACAAGTACGAGAAA  Raphanus raphanistrum subsp. maritimus
EV532352       <-- AAGGTACCAAGAAGGTTGTGGGAGTGAAAACGGAAGACAAGTACGAGAAA  Raphanus raphanistrum subsp. maritimus
FD958733       <-- AAGATACCAAGAAGGTCGTGGGAGTGAAAACGGAAGACAAGTACGGGAAA  Raphanus raphanistrum subsp. maritimus
FD555276       <-- AAGATACCAAGAAGGTTGTGGGAGTGAAAACGGAAGACAAGGACTAGAAA  Raphanus raphanistrum subsp. landra
FD962119       --> AAGATACCAAGAAAGTCGTGGGAGTGAAAACGGAAGACAgta........  Raphanus raphanistrum subsp. maritimus
EV524665       --> AAGGTACCAAGAAGGTTGTGGGAGTGAAAACGGAAGACAAGTACGAGAAA  Raphanus raphanistrum subsp. maritimus
EV528324       --> AAGGTACCAAGAAGGTTGTGGGAGTGAAAACGGAAGACAAGTACGAGAAA  Raphanus raphanistrum subsp. maritimus
FD551543       --> AAGATACCAAGAAGGTTGTGGGAGTGAAAACGGAAGACAAtgtatgcaaa  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986954       --> AAGATACCAAGAAGGTTGTGGGAGTGAAAACGGAAGACAAGGACCAGAAA  Raphanus raphanistrum subsp. landra
FD987034       --> AAGATACCAAGAAGGTTGTGGGAGTGAAAACGGAAGACAAGGACCAGAAA  Raphanus raphanistrum subsp. landra

               701    -    751
UN11599        --> AAGGGATTTAGCAAAAAGACTGTTGGTTTGTAGTAGGTAGATGATGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- AAGGGATTTAGCAAAAAGACTGTTGGTTTGTAGTAGGTAGATGATGTATG
EV532352       <-- AAGGGATTTAGCAAAAAGACTGTTGGTTTGTAGTAGGTAGATGATGTATG
FD958733       <-- AAGGGATTTAACAAAAAGACTGTTGGTTTGTAGTAGGTAGATGATGTATG
FD555276       <-- AAGGGATTTAACAAAAAGACTGTTGGTTTGTAGTAGGTAGATGATGTATG
FD962119       --> ..................................................
EV524665       --> AAGGGATTTAGCAAAA-GACTGTTGGTTTGTAGTAG-TAGATGATGTATG
EV528324       --> AAGGGATTTAGC......................................
FD551543       --> aagg..............................................
FD986954       --> A-GGGATTTAACAAAAAGACTGTTGGTTTGTAGTAGGTAGATGATGTATG
FD987034       --> A-GGGATTTAACAAAAAGACTGTTGGTTTGTAGTAGGTAGATGATGTATG

               751    -    801
UN11599        --> TGGTTTACTTATTGTGGTTAGGGTCTCATGTCTACTCGTGTGTTGTTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- TGGTTTACTTATTGTGGTTAGGGTCTCATGTCTACTCGTGTGTTGTTGTA  Raphanus raphanistrum subsp. maritimus
EV532352       <-- TGGTTTACTTATTGTGGTTAGGGTCTCATGTCTACTCGTGTGTTGTTGTA  Raphanus raphanistrum subsp. maritimus
FD958733       <-- TGGTTTACTTATTGTGGTTAGGGTCTCATGTCTACTCGTGTGTTGTTGTA  Raphanus raphanistrum subsp. maritimus
FD555276       <-- TGGTTTATTTACTGTGGTTAGGGTCTCATGTCTACTCGTGTGTTGTTGTA  Raphanus raphanistrum subsp. landra
FD962119       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV524665       --> TGGTTTACTTATTGTGGTTAGGGTCTCATGTCTACTCGTGTGTTGTTGTA  Raphanus raphanistrum subsp. maritimus
EV528324       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD551543       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986954       --> TGGTTTATTTACTGTGGTTAGGGTCTCATGTCTACTCGTGTGTTGTTGTA  Raphanus raphanistrum subsp. landra
FD987034       --> TGGTTTATTTACTGTGGTTAGGGTCTCATGTCTACTCGTGTGTTGTTGTA  Raphanus raphanistrum subsp. landra

               801    -    851
UN11599        --> ATATTGCGTGTAGTGATTTTGTAACACTGGTTGTTGTAGTTTTGCTCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- ATATTGCGTGTAGTGATTTTGTAACACTGGTTGTTGTAGTTTTGCTCCTG  Raphanus raphanistrum subsp. maritimus
EV532352       <-- ATATTGCGTGTAGTGATTTTGTAACACTGGTTGTTGTAGTTTTGCTCCTG  Raphanus raphanistrum subsp. maritimus
FD958733       <-- ATATTGCGTGTAGTGATTTTGTAACACTGGTTGTTGTAGTTTTGCTCCTG  Raphanus raphanistrum subsp. maritimus
FD555276       <-- ATATTGCGTGTAGTGAATTTGTAACACTGGTTGTTGTAGTTTTGCTCCTG  Raphanus raphanistrum subsp. landra
FD962119       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV524665       --> ATATTGCGTGTAGTGATTTTGTAACACTGGTTGTTGTAGTTTTGCTCCTG  Raphanus raphanistrum subsp. maritimus
EV528324       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD551543       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986954       --> ATATTACGTGTAGTGAATTTGTAACACTGGTTGTTGTAGTTTTGCTCCTG  Raphanus raphanistrum subsp. landra
FD987034       --> ATATTACGTGTAGTGAATTTGTAACACTGGTTGTTGTAGTTTTGCTCCTG  Raphanus raphanistrum subsp. landra

               851    -    901
UN11599        --> AAATACTGATTTGGAGATTGTTTTTTTCTTCTTCTTGTTTTCTCTGTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- AAATACTGATTTGGAGATTGTTTTTTTCTTCTTCTTGCTTTCTCTGTCTA
EV532352       <-- AAATACTGATTTGGAGATTGTTTTTTTCTTCTTCTTGCTTTCTCTGTCTA
FD958733       <-- AAATACTGATTTGGAGATTGTTTTTTTCTTCTTCTTGTTTTCTCTGTCTA
FD555276       <-- AAATACTGATTTGGAGATTGTTTTTT-CTTCTTCTTGTTTTCTCTGTCTA
FD962119       --> ..................................................
EV524665       --> AAATACTGATTTG.....................................
EV528324       --> ..................................................
FD551543       --> ..................................................
FD986954       --> AA-TACTGATTTGGAGATTGTTTTTctt......................
FD987034       --> AAATACTGATTTGGAGATTGTTTTT--CTTCTTCTTGTTTTCTCTGTCTA

               901    -    951
UN11599        --> TTTGATTAGATACATAGTTACATTTTGATTTACTATGTCATCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529606       <-- TTTGATTAGATACATAGTTACATTTTGATTT..............
EV532352       <-- TTTGATTAGATACATAGTTACATTTTGATTT..............
FD958733       <-- TTTGATTAGATACATAGTTACATTTTGATTTACTATGTCATCTCA
FD555276       <-- TTTGATTAGATACATAGTTACATTTTGATTTACTc..........
FD962119       --> .............................................
EV524665       --> .............................................
EV528324       --> .............................................
FD551543       --> .............................................
FD986954       --> .............................................
FD987034       --> TTTGATTAGATACATAGTTACATTTTG..................