Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN11869

               1      -     51
UN11869        --> GAGTAAACCCTGATGAGGTTGTAGCTCTAGGTGCTGCAGTCCAGGCTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- ..................................................
EW721174       <-- ..................................................
FY452674       <-- ..................................................
EX899163       <-- ..................................................
EX749693       --> GAGTAAACCCTGATGAGGTTGTAGCTCTAGGTGCTGCAGTCCAGGCTGGT
EW716853       --> ..................................................
EX894916       --> ..................................................

               51     -    101
UN11869        --> GTTCTTGCTGGAGATGTTAGTGACATTGTTCTTCTCGATGTCACACCGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- ..................................................
EW721174       <-- ..................................................
FY452674       <-- ..................................................
EX899163       <-- ..................................................
EX749693       --> GTTCTTGCTGGAGATGTTAGTGACATTGTTCTTCTCGATGTCACACCGCT
EW716853       --> ..................................................
EX894916       --> ..................................................

               101    -    151
UN11869        --> TTCGATTGGTTTGGAAACTCTTGGAGGTGTCATGACTAAGATTATTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- ..................................................
EW721174       <-- ..................................................
FY452674       <-- ..................................................
EX899163       <-- ..................................................
EX749693       --> TTCGATTGGTTTGGAAACTCTTGGAGGTGTCATGACTAAGATTATTCCAA
EW716853       --> ..................................................
EX894916       --> ..................................................

               151    -    201
UN11869        --> GGAACTCCACTCTGCCTACTTCCAAATCAGAAGTCTTTTCGACTGCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- ..................................................
EW721174       <-- ..................................................
FY452674       <-- ..................................................
EX899163       <-- ..................................................
EX749693       --> GGAACTCCACTCTGCCTACTTCCAAATCAGAAGTCTTTTCGACTGCTGCT
EW716853       --> ..................................................
EX894916       --> ..................................................

               201    -    251
UN11869        --> GATGGACAGACAAGTGTTGAGATCAATGTGCTGCAGGGTGAGAGGGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- ..................................................
EW721174       <-- ..................................................
FY452674       <-- ..................................................
EX899163       <-- ..................................................
EX749693       --> GATGGACAGACAAGTGTTGAGATCAATGTACTGCAAGGTGAGAGGGAGTT
EW716853       --> .ATGGACAGACAAGCGTGGAGATCAATGTGCTGCAGGGTGAGAGAGAGTT
EX894916       --> ..................................................

               251    -    301
UN11869        --> TGTCCGGGATAACAAGTCTCTTGGCAGCTTCCGTCTGGATGGTATTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- ..................................................
EW721174       <-- ..................................................
FY452674       <-- ..................................................
EX899163       <-- ..................................................
EX749693       --> TGTCCGGGATAACAAGTCTCTTGGCAGCTTCCGTCTGGATGGTATCCCTC
EW716853       --> TGTCCGGGACAACAAATCTCTTGGCAGCTTCCGTCTCGATGGTATTCCAC
EX894916       --> ..................................................

               301    -    351
UN11869        --> CGGCACCACGTGGAGTTCCACAAATCGAAGTCAAATTTGACATTGATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- ....ACCACGTGGAGTTCCACAAATAGAAGTCAAATTTGACATTGATGCA
EW721174       <-- ...............TTCCACAAATCGAAGTCAAATTTGACATTGATGCA
FY452674       <-- ...........................AAGTCAAATTTGACATTGATGCA
EX899163       <-- ..................................................
EX749693       --> CGGCACCACGTGGAGTTCCACAAATCGAAGTCAAATTTGACATTGATGCA
EW716853       --> CGGCACCACGTGGAGTTCCACAAATCGAAGTCAAATTTGACATTGATGCA
EX894916       --> ..................................................

               351    -    401
UN11869        --> AACGGAATCCTCTCAGTCAGTGCTAGTGACAAAGGCACCGGAAAGAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- AACGGAATCCTGTCAGTCAGTGCTAGTGACAAAGGCTCCGGAAAGAAACA
EW721174       <-- AACGGAATCCTCTCAGTCAGTGCTAGTGACAAAGGCACCGGAAAGAAACA
FY452674       <-- AACGGAATCCTCTCAGTCAGTGCTAGTGACAAAGGCACCGGAAAGAAACA
EX899163       <-- ..................................................
EX749693       --> AACGGAATCCTCTCAGTCAGTGCTAGTGACAAAGGCACCGGAAAGAAACA
EW716853       --> AACGGAATCCTCTCAGTCAGTGCTAGTGACAAAGGCACCGGAAAGAAACA
EX894916       --> ..................................................

               401    -    451
UN11869        --> AGACATTACTATTACTGGTGCCAGTACATTGCCCAAGGATGAGGTAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- AGACATTACTATTACTGGTGCCAGTACATTGCCCAAGGATGAGGTAGAGC
EW721174       <-- AGACATTACTATTACTGGTGCCAGTACATTGCCCAAGGATGAGGTAGAGC
FY452674       <-- AGACATTACTATTACTGGTGCCAGTACATTGCCCAAGGATGAGGTAGAGC
EX899163       <-- ..................................................
EX749693       --> AGACATTACCATTACTGGTGCCAGTACGTTGCCCAAGGATGAGGTAGAGC
EW716853       --> AGACATTACTATTACTGGTGCCAGTACATTGCCCAAGGATGAGGTAGAGC
EX894916       --> ..................................................

               451    -    501
UN11869        --> AAATGGTGCAAGAAGCAGAAAGGTTTGCGAAAGATGACAAAGAGAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- AAATGGTGCAAGAAGCAGAAAGGTTTGCGAAAGATGACAAAGAGAAGAGG
EW721174       <-- AAATGGTGCAAGAAGCAGAAAGGTTTGCGAAAGATGACAAAGAGAAGAGG
FY452674       <-- AAATGGTGCAAGAAGCAGAAAGGTTTGCGAAAGATGACAAAGAGAAGAGG
EX899163       <-- ..........................................gGAAGAGG
EX749693       --> AAATGGTGCAAGAAGCAGAAAGGTTTGCGAAAGATGACAAAGAGAAGAGG
EW716853       --> AAATGGTGCAAGAAGCAGAAAGGTTTGCGAAAGATGACAAAGAGAAGAGG
EX894916       --> ..........................................gGAAGAGG

               501    -    551
UN11869        --> GATGCAATTGACACAAAGAACCAGGCGGATTCAGTTGTTTACCAGACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- GATGCAATTGACACAAAGAACCAGGCGGATTCAGTTGTTTACCAGACAGA
EW721174       <-- GATGCAATTGACACAAAGGACCAGGCTGATTCAGTTGTTTACCAGACAGA
FY452674       <-- GATGCAATTGACACAAAGAACCAGGCGGATTCAGTTGTTTACCAGACAGA
EX899163       <-- GATGCAATTGACACAAAGAACCAGGCGGATTCAGTTGTTTACCAGACAGA
EX749693       --> GATGCAATTGACACAAAGAACCAGGCGGATTCAGTTGTTTACCAGACAGA
EW716853       --> GATGCAATTGACACAAAGGACCAGGCTGATTCAGTTGTTTACCAGACAGA
EX894916       --> GATGCAATTGACACAAAGAACCAGGCGGATTCAGTTGTTTACCAGACAGA

               551    -    601
UN11869        --> GAAGCAACTTAAAGAACTTGGAGAGAAGATTCCAGGTGAAGTGAAAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- GAAGCAACTTAAAGAACTTGGAGAGAAGATTCCAGGTGAAGTGAAAGAGA
EW721174       <-- GAAGCAACTTAAAGAACTTGGAGAGAAGATTCCAGGTGAAGTGAAAGAGA
FY452674       <-- GAAGCAACTTAAAGAACTTGGAGAGAAGATTCCAGGTGAAGTGAAAGAGA
EX899163       <-- GAAGCAACTTAAAGAACTTGGGGAGAAGATTCCAGGTGAAGTGAAAGAGA
EX749693       --> GAAGCAACTTAAAGAACTTGGAGAGAAGATTCCAGGTGAAGTGAAAGA..
EW716853       --> GAAGCAACTTAAAGAACTTGGAGAGAAGATTCCAGGTGAAGTGAAAGAGA
EX894916       --> GAAGCAACTTAAAGAACTTGGGGAGAAGATTCCAGGTGAAGTGAAAGAGA

               601    -    651
UN11869        --> AGGTGGAGGCCAAACTACAAGAGCTTAAAGAGAAGATTGGAAGCGGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- AGGTGGAGGCCAAACTACAAGAGCTTAAAGAGAAGATTGGAAGCGGATCA
EW721174       <-- AGGTGGAGGCCAAACTACAAGAGCTTAAAGAGAAGATTGGAAGCGGATCA
FY452674       <-- AGGTGGAGGCCAAACTACAAGAGCTTAAAGAGAAGATTGGAAGCGGATCA
EX899163       <-- AGGTGGAGGCCAAACTACAAGAGCTTAAAGAGAAGATTGGAAGCGGATCA
EX749693       --> ..................................................
EW716853       --> AGGTGGAGGCCAAACTACAAGAGCTTAAAGAGAAGATTGGAAGCGGATCA
EX894916       --> AGGTGGAGGCCAAACTACAAGAGCTTAAAGAGAAGATTGGAAGCGGATCA

               651    -    701
UN11869        --> ACCCAAGAAATCAAGGACACCATGGCTGCTCTTAACCAAGAAGTGATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- ACCCAAGAAATCAAGGACACCATGGCTGCTCTTAACCAAGAAGTGATGCA
EW721174       <-- ACCCAAGAAATCAAGGACACCATGGCTGCTCTTAACCAAGAAGTGATGCA
FY452674       <-- ACCCAAGAAATCAAGGACCCCATGGCTGCTTTTAACCAAGAAGTGATGCA
EX899163       <-- ACCCAAGAAATCAAGGACACCATGGCTGCTCTTAACTAAGAAGTGATGCA
EX749693       --> ..................................................
EW716853       --> ACCCAAGAAATCAAGGACACCATGGCTGCTCTTAACCAAGAAGTGATGCA
EX894916       --> ACCCAAGAAATCAAGGACACCATGGCTGCTCTTAACTAAGAAGTGATGCA

               701    -    751
UN11869        --> GATTGGTCAATCTATGTACAACCAGCCTGGTGCTGGAGCAGGAGCTGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- GATTGGTCAATCTATGTACAACCAGCCTGGTGCTGGAGCAGGAGCTGCAG
EW721174       <-- GATTGGTCAATCTATGTACAACCAGCCTGGTGCTGGAGCAGGAGCTGCAG
FY452674       <-- GATTGGTCAATCTATGTACAACCAGCCTGGTGCTGGAGCAGGAGCTGCAG
EX899163       <-- GATTGGTCAATCTATGTACAACCAGCCTGGTGCTGGAGCAGGAGCTGCAG
EX749693       --> ..................................................
EW716853       --> GATTGGTCAATCTATGTACAACCAGCCTGGTGCTGGAGCAGGAGCTGCAG
EX894916       --> GATTGGTCAATCTATGTACAACCAGCCTGGTGCTGGAGCAGGAGCTGCAG

               751    -    801
UN11869        --> GTCCTTCCCCTGGAGGAGAAGGTGCTTCATCAGCAGATTCATCGTCAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- GTCCTTCCCCTGGAGGAGAAGGTGCTTCATCAGCAGATTCATCGTCAAGC
EW721174       <-- GTCCTTCCCCTGGAGGAGAAGGTGCTTCATCAGCAGATTCATCGTCAAGC
FY452674       <-- GTCCTTCCCCTGGAGGAGAAGGTGCTTCATCAGCAGATTCATCGTCAAGC
EX899163       <-- GTCCTTCCCCTGGAGGAGAAGGTGCTTCATCAGCAGATTCATCGTCAAGC
EX749693       --> ..................................................
EW716853       --> GTCCTTCCCCTGGAGGAGAAGGTGCTTCATCAGCAGATTCATCGTCAAGC
EX894916       --> GTCCTTCCCCTGGAGGAGAAGGTGCTTCATCAGCAGATTCATCGTCAAGC

               801    -    851
UN11869        --> AAAGGTGGTGATGATGTGATCGATGCTGACTTCACTGATAGCAACTGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- AAAGGTGGTGATGATGTGATCGATGCTGACTTCACTGATAGCAACTGAGG
EW721174       <-- AAAGGTGGTGATGATGTGATCGATGCTGACTTCACTGATAGCAACTGAGG
FY452674       <-- AAAGGTGGTGATGATGTGATCGATGCTGACTTCACTGATAGCAACTGAGG
EX899163       <-- AAAGGTGGTGATGATGTGATCGATGCTGACTTCACTGATAGCAACTGAGG
EX749693       --> ..................................................
EW716853       --> AAAGGTGGTGATGATGTGATCGATGCTGACTTCACTGATAGCAACTGAGG
EX894916       --> AAAGGTGGTGATGATGTGATCGATGCTGACTTCACTGATAGCAACTGAGG

               851    -    901
UN11869        --> AATCGAACTTTGATAATTGAGATGATGTGGATCGATACTGACTCACCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- AATCGAACTTTGATAATTGAGATGATGTGGATCGATACTGACTCACCTCC
EW721174       <-- AATCGAACTTTGATAATTGAGATGATGTGGATCGATACTGACTCACCTCC
FY452674       <-- AATCGAACTTTGATAATTGAGATGATGTGGATCGATACTGACTCACCTCC
EX899163       <-- AATCGAACTTTGATAATTGAGATGATGTGGATCGATACTGACTCACCTCC
EX749693       --> ..................................................
EW716853       --> AATCGAACTTTGATAATTGAGATGATGTGGATCGATACTGACTCACCTCC
EX894916       --> AATCGAACTTTGATAATTGAGATGATGTGGATCGATACTGACTCACCTCC

               901    -    951
UN11869        --> AATTAGAAAAAAAACTTGGATGCAGGGCGAAGCTATTTTATAAACAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- AATT-GAAAAAAAACT..................................  Raphanus sativus cv GSK3-1
EW721174       <-- AATTAGAAAAAAAACTTGGATGCAGGGCGAAGCTATTTTATAAACAATGT  Raphanus sativus var. oleiformis
FY452674       <-- AATTAGAAAAAAAACTTGGATGCAGGGCGAAGCTATTTTATAAACAATGT  Raphanus sativus cv GSK3-1
EX899163       <-- AATTAGAAAAAAA-CTTGGATGCAGGGCGAAGCTATTTTATAAACAATGT  Raphanus sativus cv Early Scarlet Globe
EX749693       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW716853       --> AATTAGAAAAAAA-CTTGGATGCAGG-CGAAGCTATTT-ATAAACAATGT  Raphanus sativus var. oleiformis
EX894916       --> AATTAGAAAAAAA-CTTGGATGCAGGGCGAAGCTATTTTATAAACAATGT  Raphanus sativus cv Early Scarlet Globe

               951    -   1001
UN11869        --> GTTAGCAATTGCATCTACAATATTTTGAAAGTTTAGTGTATTGTATAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- ..................................................
EW721174       <-- GTTAGCAATTGCATCTACAATATTTTGAAAGTTTAGTGTATTGTATAATT
FY452674       <-- GTTAGCAATTGCATCTACAATATTTTGAAAGTTTAGTGTATTGTTTAATT
EX899163       <-- GTTAGCAATTGCATCTACAATATTTTGAAAGTTTAGTGTATTGTATAATT
EX749693       --> ..................................................
EW716853       --> GTTAGCA-TTGCATCTACA-TATTTTGAA-G-TTAGTGTAT-GTATAATT
EX894916       --> GTTAGCAATTGCATCTACAATATTTTGAAAGTTTAGTGTATTGTATAATT

               1001   -   1051
UN11869        --> -ATTTGTTTTATGTGCAAGTATGCACTTATAAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442993       <-- ....................................
EW721174       <-- TATTTGTTTTATGTGCAAGTATGCACTTATAAATtc
FY452674       <-- ....................................
EX899163       <-- -ATTTGTTTTATGTGCAAGTATGCACTTATAAATCC
EX749693       --> ....................................
EW716853       --> -ATTTGTTT-ATGTGCA-GTATGCACTTATAAtt..
EX894916       --> -ATTTGTTTTATGTGCAAGTATGCACTTATAAATCC