RadishBase

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Alignment for radish unigene UN11931

               1      -     51
UN11931        --> GTAGACTAATTAACTTTGGAATAAAAATGGGTCTATTCCCCGGATTTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- ..................................................
EX775571       <-- ..................................................
EX899536       <-- ..................................................
EY937330       <-- ..................................................
FD555862       <-- ..................................................
EV541044       <-- ..................................................
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- ..................................................
EX901955       <-- ..................................................
FD969250       <-- ..................................................
EX893771       <-- ..................................................
EV536831       --> GTAGACTAATTAACTTTGGAATAAAAATGGGTCTATTCCCCGGATTTGGT
EX754386       --> ........ATTAACTTTGGAATAAAAATGGGTCTATTCCCCGGATTTGGT
FD544285       --> ........ATTAACTTTGGAATAAAAATGGGTCTATTCCCCGGATTTGGT
EY904972       --> ...............ggGGAATAAAAATGGGTCTATTCCCCGGATTTGGT
EV536637       --> ..................................................
FD559509       --> ..................................................
FD560277       --> ..................................................
FD937799       --> ..................................................

               51     -    101
UN11931        --> GGCTGGATCAATCAGAATATTCAACAGCCCCTTCAGACGACGTCCAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- ..................................................
EX775571       <-- ..................................................
EX899536       <-- ..................................................
EY937330       <-- ..................................................
FD555862       <-- ..................................................
EV541044       <-- ..................................................
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- ..................................................
EX901955       <-- ..................................................
FD969250       <-- ..................................................
EX893771       <-- ..................................................
EV536831       --> GGCTGGATCAATCAGAATATTCAACAGCCCCTTCAGACGACGTCCAAGAG
EX754386       --> GGCTGGATCAATCAGAATATTCAACAGCCCCTTCAGACGACGTCCAGGAG
FD544285       --> GGCTAGATCAATCAGAATATTCAACAGCCCCTTCAGACGACGTCCAAGAG
EY904972       --> GGCTGGATCAATCAGAATATTCAACAGCCCCTTCAGACGACGTCCAAGAG
EV536637       --> .............gGAATATTCAACAGCCCCTTCAGACGACGTCCAAGAG
FD559509       --> ..................................................
FD560277       --> ..................................................
FD937799       --> ..................................................

               101    -    151
UN11931        --> ATCTAAGAATGGTAAATCTAGTTCAGTTTCAGAAGAAGATAGGTATATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- ..................................................
EX775571       <-- ..................................................
EX899536       <-- ..................................................
EY937330       <-- ..................................................
FD555862       <-- ..................................................
EV541044       <-- ..................................................
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- ..................................................
EX901955       <-- ..................................................
FD969250       <-- ..................................................
EX893771       <-- ..................................................
EV536831       --> ATCTAAGAATGGTAAATCTAGTTCAGTTTCAGAAGAAGATAGGTATATTG
EX754386       --> ATCTAAGAATGGTAAATCTAGTTCAGTTTCAGAAGAAGATAGGTATATTG
FD544285       --> ATCTAAGAATGGTAAATCTAGTTCAGTTTCAGAAGAAGATAGGTATATTG
EY904972       --> ATCTAAGAATGGTAAATCTAGTTCAGTTTCAGAAGAAGATAGGTATATTG
EV536637       --> ATCTAAGAATGGTAAATCTAGTTCAGTTTCAGAAGAAGATAGGTATATTG
FD559509       --> ..................................................
FD560277       --> ..................................................
FD937799       --> ..................................................

               151    -    201
UN11931        --> AGGGACCATGGTATTGGGATCCTGATTTAACCCCTAAAGAAAAGGCCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- ..................................................
EX775571       <-- ..................................................
EX899536       <-- ..................................................
EY937330       <-- ..................................................
FD555862       <-- ..................................................
EV541044       <-- ..................................................
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- ..................................................
EX901955       <-- ..................................................
FD969250       <-- ..................................................
EX893771       <-- ..................................................
EV536831       --> AGGGACCATGGTATTGGGATCCTGATTTAACCCCTAAAGAAAAGGCCGAA
EX754386       --> AGGGACCATGGTATTGGGATCCTGATTTAACCCCTAAAGAAAAGGCCGAA
FD544285       --> AGGGACCATGGTATTGGGATCCTGATTTAACCCCTAAAGAAAAGGCCGAA
EY904972       --> AGGGACCATGGTATTGGGATCCTGATTTAACCCCTAAAGAAAAGGCCGAA
EV536637       --> AGGGACCATGGTATTGGGATCCTGATTTAACCCCTAAAGAAAAGGCCGAA
FD559509       --> ..................................................
FD560277       --> ..................................................
FD937799       --> ..................................................

               201    -    251
UN11931        --> TCCTTGGAATTAGACCATGTTAAATCTATGCCACTGCGTGCTACCGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- ..................................................
EX775571       <-- ..................................................
EX899536       <-- ..................................................
EY937330       <-- ..................................................
FD555862       <-- ..................................................
EV541044       <-- ..................................................
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- ..................................................
EX901955       <-- ..................................................
FD969250       <-- ..................................................
EX893771       <-- ..................................................
EV536831       --> TCCTTGGAATTAGACCATGTTAAATCTATGCCACTGCGCGCTACCGATCC
EX754386       --> TCCTTGGAATTAGACCATGTTAAATCTATGCCACTGCGTGCTACCGATCC
FD544285       --> TCCTTGGAATTAGACCATGTTAAATCTATGCCACTGCGTGCTACCGATCC
EY904972       --> TCCTTGGAATTAGACCATGTTAAATCTATGCCACTGCGTGCTACCGATCC
EV536637       --> TCCTTGGAATTAGACCATGTTAAATCTATGCCACTGCGTGCTACCGATCC
FD559509       --> ..................................................
FD560277       --> ..................................................
FD937799       --> ..................................................

               251    -    301
UN11931        --> TAAGTACTATGACTCGAAAGAAGTGGCGAGGCAATACAACCTTTGGAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- ..................................................
EX775571       <-- ..................................................
EX899536       <-- ..................................................
EY937330       <-- ..................................................
FD555862       <-- ..................................................
EV541044       <-- ..................................................
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- ..................................................
EX901955       <-- ..................................................
FD969250       <-- ..................................................
EX893771       <-- ..................................................
EV536831       --> TAAGTACTATGACTCGAAAGAAGTGGC.......................
EX754386       --> TAAGTACTATGACTCGAAAGAAGTGGCGAGGCAATACAACCTTTGGAATT
FD544285       --> TAAGTACTATGACTCGAAAGAAGTGGCGAGGCAATACAACCTTTGGAATT
EY904972       --> TAAGTACTATGACTCGAAAGAAGTGGCGAGGCAATACAACCTTTGGAATT
EV536637       --> TAAGTACTATGACTCGAAAGAAGTGGCGAGGCAATACAACCTTTGGAATT
FD559509       --> ..................................................
FD560277       --> ..................................................
FD937799       --> ..................................................

               301    -    351
UN11931        --> CTGAATTTAAAAAACATCCATGGAAAGATGCACCTGCTAAGGTGAAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- ..........................................TGAAGGTG
EX775571       <-- ..................................................
EX899536       <-- ..................................................
EY937330       <-- ..................................................
FD555862       <-- ..................................................
EV541044       <-- ..................................................
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- ..................................................
EX901955       <-- ..................................................
FD969250       <-- ..................................................
EX893771       <-- ..................................................
EV536831       --> ..................................................
EX754386       --> CTGAATTTAAAAAACATCCATGGAAAGATGCACCTGCTAAGGTGAAGGTG
FD544285       --> CTGATTTTAAAAAACATCCATGGAAAGATGTACCTGCTAAGGTGAAGGTG
EY904972       --> CTGAATTTAAAAAACATCCATGGAAAGATGCACCTGCTAAGGTGAAGGTG
EV536637       --> CTGAATTTAAAAAACATCCATGGAAAGATGCACCTGCTAAGGTGAAGGTG
FD559509       --> ...........................gTGCACCTGCTAAGGTGAAGGTG
FD560277       --> ..................................................
FD937799       --> ..................................................

               351    -    401
UN11931        --> AAAACAAAAAACGGCATTTGCCATTTAAACATAGATTTCACATTGGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- AAAACAAAAAACGGCATTTGCCATTTAAACATAGATTTCACATTGGGATC
EX775571       <-- ...........CGGCATTTGCCATTTAAACATAGATTTCACATTGGGATC
EX899536       <-- .............GCATTTGCCATTTAAACATAGATTTCACATTGGGATC
EY937330       <-- ..................................................
FD555862       <-- ..................................................
EV541044       <-- ..................................................
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- ..................................................
EX901955       <-- ..................................................
FD969250       <-- ..................................................
EX893771       <-- ..................................................
EV536831       --> ..................................................
EX754386       --> AAAACAAAAAACGGCATTTGCCATTTAAACATAGATTTCACATTGGGATC
FD544285       --> AAAACAAAAAACGGCATTTGCCATTTAAACATAGATTTCACATTGGGATC
EY904972       --> AAAACAAAAAACGGCATTTGCCATTTAAACATAGATTTCACATTGGGATC
EV536637       --> AAAACAAAAAACGGCATTTGCCATTTAAACATAGATTTCACATTGGGATC
FD559509       --> AAAACAAAAAACGGCACTTGCCATTTAAGCATAGATTTCACATTGGGATC
FD560277       --> ..................................................
FD937799       --> ..................................................

               401    -    451
UN11931        --> TCCTCCTCAAGCTGTCTTCGAGTTGTTCACTGATCCAAGAAATATGGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- TCCTCCTCAAGCTGTCTTCGAGTTGTTCACTGATCCAAGAAATATGGGAT
EX775571       <-- TCCTCCTCAAGCTGTCTTCGAGTTGTTCACTGATCCAAGAAATATGGGAT
EX899536       <-- TCCTCCTCAAGCCGTCTTCGAGTTGTTCACTGATCCAAGAAATATGGGAT
EY937330       <-- ................TTCGAGTTGTTCGCTGATCCAAGAAATATGGGAT
FD555862       <-- .................................................T
EV541044       <-- ..................................................
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- ..................................................
EX901955       <-- ..................................................
FD969250       <-- ..................................................
EX893771       <-- ..................................................
EV536831       --> ..................................................
EX754386       --> TCCTCCTCAAGCTGTCTTCGAGTTGTTCACTGATCCAAGAAATATGGGAT
FD544285       --> TCCTCCTCAAGCTGTCTTCGAGTTGTTCACTGATCCAAGAAATATGGGAT
EY904972       --> TCCTCCTCAAGCTGTCTTCGAGTTGTTCACTGATCCGAGAAATATGGGAT
EV536637       --> TCCTCCTCAAGCTGTCTTCGAGTTGTTCACTGATCCAAGAAATATGGGAT
FD559509       --> TCCTCCTCAAGCCGTCTTCGAGTTGTTCACTGATCCAAGAAATATGGGAT
FD560277       --> .................................................T
FD937799       --> ..................................................

               451    -    501
UN11931        --> TTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- TTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
EX775571       <-- TTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
EX899536       <-- CTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
EY937330       <-- CTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
FD555862       <-- TTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
EV541044       <-- ....CCATTCAATGGGCAAGCACAAGAACAATTGGCGCACACGTTTGGAC
FD969533       <-- ..........AATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
EY934348       <-- ...................................CGCACACGTTTGGAC
EX760005       <-- .....................................CACACGTTTGGAC
EX901955       <-- ..................................................
FD969250       <-- ..................................................
EX893771       <-- ..................................................
EV536831       --> ..................................................
EX754386       --> TTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
FD544285       --> TTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
EY904972       --> TTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
EV536637       --> TTTTCCATTCAATGGGCAAGCACAAGAACAATTGGCGCACACGTTTGGAC
FD559509       --> CTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
FD560277       --> TTTTCCATTCAATGGGCAAGTACAAGAACAATTGGCGCACACGTTTGGAC
FD937799       --> ..................................................

               501    -    551
UN11931        --> ACATTAGCAACAAAGGTTTTAAAGAAGGATGGACCAAGGCAGATCACGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- ACATTAGCAACAAAGGTTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775571       <-- ACATTAGCAACAAAGATTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. landra
EX899536       <-- ACAATAGCAACAAAGGTTTTAAACAAGGATGGACCAAGGCAGATAACGGA  Raphanus sativus cv Early Scarlet Globe
EY937330       <-- ACAATAGCAACAAAGGTTTTAAACAAGGATGGACCAAGGCAGATAACGGA  Raphanus sativus cv Early Scarlet Globe
FD555862       <-- ACATTAGCAACAAAGATTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. landra
EV541044       <-- ACATTAGCAACAAAGGTTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969533       <-- ACATTAGCAACAAAGATTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934348       <-- ACAATAGCAACAAAGGTTTTAAACAAGGATGGACCAAGGCAGATAACGGA  Raphanus sativus cv Early Scarlet Globe
EX760005       <-- ACATTAGCAACAAAGATTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX901955       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD969250       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893771       <-- ..................................................  Raphanus sativus var. oleiformis
EV536831       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754386       --> ACATTAGCAACAAAGGTTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544285       --> ACATTAGCAACAAAGGTTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904972       --> ACATTAGCAACAAAGGTTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536637       --> ACATTAGCAACAAAGGTTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559509       --> ACATTAGCAACAAAGGTTTTAAACAAGGATGGACCAAGGCAGATAACGGA  Raphanus raphanistrum subsp. landra
FD560277       --> ACATTAGCAACAAAGATTTTAAAGAAGGATGGACCAAGGCAGATCACGGA  Raphanus raphanistrum subsp. landra
FD937799       --> ..................................................  Raphanus sativus var. oleiformis

               551    -    601
UN11931        --> AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775571       <-- AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. landra
EX899536       <-- AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGACTATCC  Raphanus sativus cv Early Scarlet Globe
EY937330       <-- AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGACTATCC  Raphanus sativus cv Early Scarlet Globe
FD555862       <-- AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. landra
EV541044       <-- AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969533       <-- AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934348       <-- AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGACTATCC  Raphanus sativus cv Early Scarlet Globe
EX760005       <-- AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX901955       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD969250       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893771       <-- ..................................................  Raphanus sativus var. oleiformis
EV536831       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754386       --> AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544285       --> AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904972       --> AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536637       --> AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559509       --> AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGACTATCC  Raphanus raphanistrum subsp. landra
FD560277       --> AGTGGAAAAGGTTTTGAGATGGAAGATACTTGGGTATAATGGGATTATCC  Raphanus raphanistrum subsp. landra
FD937799       --> ..................................................  Raphanus sativus var. oleiformis

               601    -    651
UN11931        --> CAATACATCTAATCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- CAATACATCTAATCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
EX775571       <-- CAATACATCTAATCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
EX899536       <-- CAATACATCTAATCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
EY937330       <-- CAATACATCTAATCATCGATGAAAACCATCAAAA-GTTACAGCAACATAT
FD555862       <-- CAATACATCTA-TCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
EV541044       <-- CAATACATCTAATCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
FD969533       <-- CAATACATCTAATCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
EY934348       <-- CAATACATCTAATCATCAATGAAAACCATCAAAAAGTTACAGCAACATAT
EX760005       <-- CAATACATCTAATCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
EX901955       <-- ............TCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
FD969250       <-- ............TCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
EX893771       <-- ...................................GTTACAGCAACATAT
EV536831       --> ..................................................
EX754386       --> CAATACATCTAATCATCGATGAAAACCATCAAAA-GTTACAGCAACATAT
FD544285       --> CAATACATCTAATCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
EY904972       --> CAATACATCTAATCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
EV536637       --> CAATACATCTAATCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
FD559509       --> CAATACATCTAATCATCGATGAAAACCATAAAAACGTTACAGCAACATAT
FD560277       --> CAATACATCTA-TCATCGATGAAAACCATCAAAAAGTTACAGCAACATAT
FD937799       --> ................................................gT

               651    -    701
UN11931        --> AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EX775571       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EX899536       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EY937330       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
FD555862       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EV541044       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
FD969533       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EY934348       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EX760005       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EX901955       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
FD969250       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EX893771       <-- AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EV536831       --> ..................................................
EX754386       --> AAGAAAGTGAAAGTGATGCACATGAAA.......................
FD544285       --> AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EY904972       --> AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
EV536637       --> AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
FD559509       --> AAGAAAGTGAAAGCGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
FD560277       --> AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT
FD937799       --> AAGAAAGTGAAAGTGATGCACATGAAAGTGTTTGAGGGTAGCTGGAAAAT

               701    -    751
UN11931        --> AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCCCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATTTAGGTCACCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775571       <-- AGAGCCACTGTACGTGGATCAGAAACGGTTGTGCAAATCTAGGTCGCCGA  Raphanus raphanistrum subsp. landra
EX899536       <-- AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCCCCGA  Raphanus sativus cv Early Scarlet Globe
EY937330       <-- AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCCCCGA  Raphanus sativus cv Early Scarlet Globe
FD555862       <-- AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCGCCGA  Raphanus raphanistrum subsp. landra
EV541044       <-- AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATTTAGGTCACCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969533       <-- AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCACCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934348       <-- ATAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCCCCGA  Raphanus sativus cv Early Scarlet Globe
EX760005       <-- AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCACCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX901955       <-- AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCCCCGA  Raphanus sativus cv Early Scarlet Globe
FD969250       <-- AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATTTAGGTCACCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893771       <-- AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATTTAGGTCCCCGA  Raphanus sativus var. oleiformis
EV536831       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754386       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544285       --> AGAGCCACTGTACGTAGATCAGAAACGGT-GTGCAAATCTAG........  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904972       --> AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATC...........  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536637       --> AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCACCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559509       --> AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCGCCGA  Raphanus raphanistrum subsp. landra
FD560277       --> AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCGCCGA  Raphanus raphanistrum subsp. landra
FD937799       --> AGAGCCACTGTACGTAGATCAGAAACGGTTGTGCAAATCTAGGTCCCCGA  Raphanus sativus var. oleiformis

               751    -    801
UN11931        --> TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGTAAGGGAAGGATTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGTAAGGGAAGGATTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775571       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGTAAGGGAAGGATTGGG  Raphanus raphanistrum subsp. landra
EX899536       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGCAAGGGAAGGATTGGG  Raphanus sativus cv Early Scarlet Globe
EY937330       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGCAAGGGAAGGATTGGG  Raphanus sativus cv Early Scarlet Globe
FD555862       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGTAAGGGAAGGATTGGG  Raphanus raphanistrum subsp. landra
EV541044       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGTAAGGGAAGGATTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969533       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGCAAGGGAAGGATTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934348       <-- TTAGTGAAGAGGAGTACAAAAAATGTAGCGGCAGCAAGGGAAGGATTGGG  Raphanus sativus cv Early Scarlet Globe
EX760005       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGTAAGGGAAGGATTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX901955       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGCAAGGGAAGGATTGGG  Raphanus sativus cv Early Scarlet Globe
FD969250       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGTAAGGGAAGGATTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893771       <-- TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGCAAGGGAAGGATTGGG  Raphanus sativus var. oleiformis
EV536831       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754386       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904972       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536637       --> TTAGTGAAGAAGAGTAC.................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559509       --> TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGTAAGGGAAGGATTGGG  Raphanus raphanistrum subsp. landra
FD560277       --> TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGTAAGGGAAGGATTGGG  Raphanus raphanistrum subsp. landra
FD937799       --> TTAGTGAAGAAGAGTACAAAAAATGTAGCGGCAGCAAGGGAAGGATTGGG  Raphanus sativus var. oleiformis

               801    -    851
UN11931        --> TCAAAGGTGACAATGGAGCATATATTTCAGCCATCTTCGCTTCTTAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- TCAAAGGTGACAATGGAGCATATATTTCAGTCATTTTCGCTTCTTAATGT
EX775571       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATCTTCGCTTCTTAATGT
EX899536       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATTTTCGCTTCTTAATGT
EY937330       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATCTTCGCTTCTTAATGT
FD555862       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATTTTCGCTTCTTAATGT
EV541044       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATCTTCGCTTCTTAATGT
FD969533       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATTTTCGCTTCTTAATGT
EY934348       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATCTTCGCTTCTTAATGT
EX760005       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATCTTCGCTTCTTAATGT
EX901955       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATTTTCGCTTCTTAATGT
FD969250       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATTTTCGCTTCTTAATGT
EX893771       <-- TCAAAGGTGACAATGGAGCATATATTTCAGCCATTTTCGCTTTTTAATGT
EV536831       --> ..................................................
EX754386       --> ..................................................
FD544285       --> ..................................................
EY904972       --> ..................................................
EV536637       --> ..................................................
FD559509       --> TCAAAGGTGACAATGGAGCATATATTTCAGCCATCTTCGCTTCTTAATGT
FD560277       --> TCAAAGGTGACAATGGAGCATATATTTCAGCCATCTTCGCTTCTTAATGT
FD937799       --> TCAAAGGTGACAATGGAGCATATATTTCAGCCATCTTCGCTTCTTAATGT

               851    -    901
UN11931        --> GCCACCGGTTTCTTGGTTCATCCGTGGTATCGCCGTCAAAGTCACCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATCGCCGTCAAAGTCACCAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775571       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATCGCCGTCAAAGTCACCAAGG  Raphanus raphanistrum subsp. landra
EX899536       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATTGCCGTCAAAGTCACCAAGG  Raphanus sativus cv Early Scarlet Globe
EY937330       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATTGCCGTCAAAGTCACCAAGG  Raphanus sativus cv Early Scarlet Globe
FD555862       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATCGCCGTCAAAGTCACCAAGG  Raphanus raphanistrum subsp. landra
EV541044       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATCGCCGTCAAAGTCACCAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969533       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATCGCCGTCAAAGTCACCAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934348       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATTGCCGTCAAAGTCACCAAGG  Raphanus sativus cv Early Scarlet Globe
EX760005       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATCGCCGTCAAAGTCACCAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX901955       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATTGCCGTCAAAGTCACCAAGG  Raphanus sativus cv Early Scarlet Globe
FD969250       <-- GCCACCGGTTTCTTGGTTCATCCGTGGTATCGCCGTCAAAGTCACCAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893771       <-- GCCACCGGTTTTTTGGTTCATCCGTGGTATTGCCGTCAAAGTCACCAAGG  Raphanus sativus var. oleiformis
EV536831       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754386       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904972       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536637       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559509       --> GCCACCGGTTTCTTGGTTCATCCGTGGTATCGCCGTCAAAGTCACCAAGG  Raphanus raphanistrum subsp. landra
FD560277       --> GCCACCGGTTTCTTGGTTCATCCGTGGTATCGCCGTCAAAGTCACCAAGG  Raphanus raphanistrum subsp. landra
FD937799       --> GCCACCGGTTTCTTGGTTCATCCGTGGTATTGCCGTCAAAGTCACCAAGG  Raphanus sativus var. oleiformis

               901    -    951
UN11931        --> CTTTGCTCCAAGATCTTAGAGAACATGTAATCACCATGAACAAAATGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- CTTTGCTCCAAGATTTTAGAGAACATGTAATCACCATGAACAAAATGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775571       <-- CTTTGCTCCAAGATCTTAGAGAACATGTAATCACCATGAACAAAATGAAG  Raphanus raphanistrum subsp. landra
EX899536       <-- CTTTGCTCCAAGATCTTAGAGAACATGTAATCACGATGAACAAAATGAAG  Raphanus sativus cv Early Scarlet Globe
EY937330       <-- CTTTGTTCCAAGATCTTAGAGAACATGTAATCACGATGAACAAAATGAAG  Raphanus sativus cv Early Scarlet Globe
FD555862       <-- CTTTGCTCCAAGATCTTAGAGAACATGTAATCACCATGAACAAAATGAAG  Raphanus raphanistrum subsp. landra
EV541044       <-- CTTTGCTCCAAGATCTTAGAGAACATGTAATCACCATGAACAAAATGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969533       <-- CTTTGCTCCAAGATTTTAGAGAACATGTAATCACCATGAACAAAATGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934348       <-- CTTTGCTCCAAGATCTTAGAGAACATGTAATCACGATGAACAAAATGAAG  Raphanus sativus cv Early Scarlet Globe
EX760005       <-- CTTTGCTCCAAGATCTTAGAGAACATGTAATCACCATGAACAAAATGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX901955       <-- CTTTGCTCCAAGATCTTAGAGAACATGTAATCACGATGAACAAAATGAAG  Raphanus sativus cv Early Scarlet Globe
FD969250       <-- CTTTGCTCCAAGATTTTAGAGAACATGTAATCACCATGAACAAAATGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893771       <-- CTTTGCTCCAAGATTTTAGAGAACATGTAATCACGATGAACAAAATGAAG  Raphanus sativus var. oleiformis
EV536831       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754386       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904972       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536637       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559509       --> CTTTGCTCCAAGATCTTAGAGAACATGTAATCACCATGAACAAAATGAAG  Raphanus raphanistrum subsp. landra
FD560277       --> CTTTGCTCCAAGATCTTAGAGAACATGTAATCACCATGAACAAAATGAAG  Raphanus raphanistrum subsp. landra
FD937799       --> CTTTGCTCCAAGATCTTAGAGAACATGTAATCACGATGAACAAAATGAGG  Raphanus sativus var. oleiformis

               951    -   1001
UN11931        --> ACGGTAGACCCGCTGGTGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775571       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus raphanistrum subsp. landra
EX899536       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAATGGAAGAAGTCAAAAAAAA  Raphanus sativus cv Early Scarlet Globe
EY937330       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAATGGAAGAAGTCAAAAAAAA  Raphanus sativus cv Early Scarlet Globe
FD555862       <-- ACGGTAG-CCCGCTGATGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus raphanistrum subsp. landra
EV541044       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969533       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934348       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAATGGAAGAAGTCAAAAAAAA  Raphanus sativus cv Early Scarlet Globe
EX760005       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX901955       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAATGGAAGAAGTCAAAAAAAA  Raphanus sativus cv Early Scarlet Globe
FD969250       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893771       <-- ACGGTAGACCCGCTGGTGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus sativus var. oleiformis
EV536831       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754386       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904972       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536637       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559509       --> ACAGTAGACCCGCTGGTGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus raphanistrum subsp. landra
FD560277       --> ACGGTAG-CCCGCTGATGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus raphanistrum subsp. landra
FD937799       --> ACGGTAGACCCGCTGGTGTATGCTAAAGTAGTAGAAGAAGTCAAAAAAAA  Raphanus sativus var. oleiformis

               1001   -   1051
UN11931        --> AA---TAGAAGCCGAAAAAGAATCTGAACTAAAAGAATCGGAGTATTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- AA---TGTAAGCCGAAAAAGAATTTGAACTAAAAGAATCGGAGTATTAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775571       <-- A----TAGAAGCCGAAAAAGAATCTGAACTAAAAGAATCGGAGTATTAAA  Raphanus raphanistrum subsp. landra
EX899536       <-- AA---TAGAAGCCGAAAAAGAATCTGAACTAAAAGAATTGGAGTATTAAA  Raphanus sativus cv Early Scarlet Globe
EY937330       <-- AA---TAGAAGCCGAAAAAGAATCTGAACTAAAAGAATTGGAGTATTAAA  Raphanus sativus cv Early Scarlet Globe
FD555862       <-- AA---TAGAAGCCGAAAAAGAATCTGAACTAAAAGAATCGGAGTATTAAA  Raphanus raphanistrum subsp. landra
EV541044       <-- A----TGGAAGCCGAAAAAGAATCTGAACTAAAAGAATCGGAGTATTAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969533       <-- AA---TGGAAGCCGAAAAAGAATTTGAACTAAAAGAATCGGAGTATTAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934348       <-- AA---TAGAAGCCGAAAAAGAATCTGAACTAAAATAATTGGAGTATTAAA  Raphanus sativus cv Early Scarlet Globe
EX760005       <-- AA---TGGAAGCCGAAAAAGAATCTGAACTAAAAGAATCGGAGTATTAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX901955       <-- AA---TAGAAGCCGAAAAAGAATCTGAACTAAAAGAATTGGAGTATTAAA  Raphanus sativus cv Early Scarlet Globe
FD969250       <-- AA---TGGAAGCCGAAAAAGAATCTGAACTAAAAGAATCGGAGTATTAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893771       <-- AA---TAGAAGCCGAAAAAGAATTTGAACTAAAAGAATTGGAGTATTAAA  Raphanus sativus var. oleiformis
EV536831       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754386       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904972       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536637       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559509       --> A.................................................  Raphanus raphanistrum subsp. landra
FD560277       --> AA---TAGAAGCCGAAAA-GAATCTGAACTAAAAGAATCGGAGTATTAAA  Raphanus raphanistrum subsp. landra
FD937799       --> AAAAATAGAAGCCGAAAAAGAATCTGAACTAAAAGAATTGGAGTATTAAA  Raphanus sativus var. oleiformis

               1051   -   1101
UN11931        --> TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACTCA
EX775571       <-- TGTTTGTACTATCTCCAATGATAATAATCAATATATAGCCATCCAACcca
EX899536       <-- TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACcc.
EY937330       <-- TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACTCA
FD555862       <-- TGTTTGTACTATCTCCAATGATAATAATCAATATATAGCCATCC......
EV541044       <-- TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACTCA
FD969533       <-- TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACTCA
EY934348       <-- TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACTCA
EX760005       <-- TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACTCA
EX901955       <-- TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACTCA
FD969250       <-- TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACTCA
EX893771       <-- TGTTTGGACTATTTCCAATGATAATAATCAATATATAGCCATCCAACTCA
EV536831       --> ..................................................
EX754386       --> ..................................................
FD544285       --> ..................................................
EY904972       --> ..................................................
EV536637       --> ..................................................
FD559509       --> ..................................................
FD560277       --> TGTTTGTACTATCTCCAATGATAATAATCAATATATAGCCATCC......
FD937799       --> TGTTTGGACTATCTCCAATGATAATAATCAATATATAGCCATCCAACTCA

               1101   -   1151
UN11931        --> CTAAAAATAATAGACCAATCAGAATACAATTTAGTTAAGGGATAATTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- CTAAAAATAATAGACCAATCAGAATACAATTTAGTTAAGGGATAATTTGT
EX775571       <-- aa................................................
EX899536       <-- ..................................................
EY937330       <-- CTAAAAATAATAGACCAATCAGAATACAATTTAGTc..............
FD555862       <-- ..................................................
EV541044       <-- CTAAAAATAATAGACCAATCAGAATACAATTTAGTTAAGGGATAATTTGT
FD969533       <-- CT................................................
EY934348       <-- CTAAAAATAATAGACCAATCAGAATACAATTTAGT...............
EX760005       <-- CTAAAAATAATAGACCAATCAGAATACAATTTAGTTAAGGGATAATTTGT
EX901955       <-- CTAAAAATAATAGACCAATCAGAATACAATTTAGTTAAGGGATAATTTGT
FD969250       <-- CTAAAAATAATAGACCAATCAGAATACAATTTAGTTAAGGGATAATTTGT
EX893771       <-- CTAAAAATAATAGACCAATCAGAATACAATTTAGTTAAGGGATAATTTGT
EV536831       --> ..................................................
EX754386       --> ..................................................
FD544285       --> ..................................................
EY904972       --> ..................................................
EV536637       --> ..................................................
FD559509       --> ..................................................
FD560277       --> ..................................................
FD937799       --> CTAAAAATAATAGACCAATCAGAATACAATTTAGTTAAGGGATAATTTGT

               1151   -   1201
UN11931        --> CAATTTGAAAAGAAAATTAAGTGCAGAACATTGATTTTGACATAATTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- CAATTTG...........................................
EX775571       <-- ..................................................
EX899536       <-- ..................................................
EY937330       <-- ..................................................
FD555862       <-- ..................................................
EV541044       <-- CAATTTGAAAAGAAAATTAAGTGCAGAACATTGATTTTGAC.........
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- CAATTTGAAAA.......................................
EX901955       <-- CAATTTGAAAAGAAAATTAAGTGCAGAACATTGATTTgac..........
FD969250       <-- CAATTTGAAAAGAAAATTAAGTGCAGAACATTGATTTTGACATAATTCAA
EX893771       <-- CAATTTGAAAAGAAAATTAAGTGCAGAACATTGATTTTGACATAATTCAA
EV536831       --> ..................................................
EX754386       --> ..................................................
FD544285       --> ..................................................
EY904972       --> ..................................................
EV536637       --> ..................................................
FD559509       --> ..................................................
FD560277       --> ..................................................
FD937799       --> CGATTTGAAAAGAAAATTAAGTGCAGAACATTGATTTTGACATAATTCAA

               1201   -   1251
UN11931        --> TCCATAATAATTATGTTAAGTTTTATCCGGTACTATTTTTCAAGATGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541191       <-- ..................................................
EX775571       <-- ..................................................
EX899536       <-- ..................................................
EY937330       <-- ..................................................
FD555862       <-- ..................................................
EV541044       <-- ..................................................
FD969533       <-- ..................................................
EY934348       <-- ..................................................
EX760005       <-- ..................................................
EX901955       <-- ..................................................
FD969250       <-- TCCATAATAATTATGTTAAGTTTTATCCGGTACc................
EX893771       <-- TCCATAATAATTATGTTAAGTTTTATCCAGTACTATTTTTCAAGATGCCA
EV536831       --> ..................................................
EX754386       --> ..................................................
FD544285       --> ..................................................
EY904972       --> ..................................................
EV536637       --> ..................................................
FD559509       --> ..................................................
FD560277       --> ..................................................
FD937799       --> TCCATAATAATTATGTT.................................

               1251   -   1301
UN11931        --> GT
                   ~~
EV541191       <-- ..
EX775571       <-- ..
EX899536       <-- ..
EY937330       <-- ..
FD555862       <-- ..
EV541044       <-- ..
FD969533       <-- ..
EY934348       <-- ..
EX760005       <-- ..
EX901955       <-- ..
FD969250       <-- ..
EX893771       <-- GT
EV536831       --> ..
EX754386       --> ..
FD544285       --> ..
EY904972       --> ..
EV536637       --> ..
FD559509       --> ..
FD560277       --> ..
FD937799       --> ..