RadishBase

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Alignment for radish unigene UN11953

               1      -     51
UN11953        --> CTGAGGATCTTCGAATTGTGTAAATTTTCACCAGATCCAAAGGTACCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ..................................................
FY451835       <-- ..................................................
EX767245       <-- ..................................................
EW721732       <-- ..................................................
EW727059       <-- ..................................................
EX774192       <-- ..................................................
EV543066       <-- ..................................................
EV530378       <-- ..................................................
FD961033       <-- ..................................................
EY909813       <-- ..................................................
EX769796       <-- ..................................................
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> CTGAGGATCTTCGAATTGTGTAA-TTTTCACCAGATCCAAAGGTACCAAG
FY450589       --> .........TTCGAATTGTGTAAATTTTCACCAGATCCAAAGGTACCAAG
EX888137       --> ...........CGAATTGTGTAAATTTTCACCAGATCCAAAGGTACCAAG
FY431493       --> .............gATTGTGTAA-TTTTCACCAGATCCAA-GGTACCAAG
FY431511       --> ............................CACCAGATCCAA-GGTACCAAG
EV525706       --> ..................................................
EV551088       --> ..................................................
EX769949       --> ..................................................
EW718105       --> ..................................................
EW726389       --> ..................................................
EV539224       --> ..................................................

               51     -    101
UN11953        --> AGAGACTGAGGAAGCAAGCATGGGGTGTTCGTTTTCGGGATTGAACGCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ..................................................
FY451835       <-- ..................................................
EX767245       <-- ..................................................
EW721732       <-- ..................................................
EW727059       <-- ..................................................
EX774192       <-- ..................................................
EV543066       <-- ..................................................
EV530378       <-- ..................................................
FD961033       <-- ..................................................
EY909813       <-- ..................................................
EX769796       <-- ..................................................
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> AGAGACTGAGGAAGCAAGCATGGGGTGTTCGTTTTCGGGATTGAACGCGC
FY450589       --> AGAGACTGAGGAAGCAAGCATGGGGTGTTCGTTTTCGGGATTGAACGCGC
EX888137       --> AGAGACTGAGGAAGCAAGCATGGGGTGTTCGTTTTCGGGATTGAACGCGC
FY431493       --> AGAGACTGAGGAAGCAAGCATGGGGTGTTCGTTTTCGGGATTGAACGCGC
FY431511       --> AGAGACTGAGGAAGCAAGCATGGGGTGTTCGTTTTCGGGATTGAACGCGC
EV525706       --> ..................................................
EV551088       --> ..................................................
EX769949       --> ..................................................
EW718105       --> ..................................................
EW726389       --> ..................................................
EV539224       --> ..................................................

               101    -    151
UN11953        --> TTTACGACAACGGCGGAGGCGACGTGTGGATCAATGAGAACCGTTTCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ..................................................
FY451835       <-- ..................................................
EX767245       <-- ..................................................
EW721732       <-- ..................................................
EW727059       <-- ..................................................
EX774192       <-- ..................................................
EV543066       <-- ..................................................
EV530378       <-- ..................................................
FD961033       <-- ..................................................
EY909813       <-- ..................................................
EX769796       <-- ..................................................
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> TTTACGACAACGGCGGAGGCGACGTGTGGATCAATGAGAACCGTTTCAGG
FY450589       --> TTTACGACAACGGCGGAGGCGACGTGTGGATCAATGAGAACCGTTTCAGG
EX888137       --> TTTACGACAACGGGGGAGGCGACGTGTGGATCAATGAGAACCGTTTCAGG
FY431493       --> TTTACGACAACGGCGGAGGCGACGTGTGGATCAATGAGAACCGTTTCAGG
FY431511       --> TTTACGACAACGGCGGAGGCGACGTGTGGATCAATGAGAACCGTTTCAGG
EV525706       --> ..................................................
EV551088       --> ..................................................
EX769949       --> ..................................................
EW718105       --> ..................................................
EW726389       --> ..................................................
EV539224       --> ..................................................

               151    -    201
UN11953        --> ATCGTGAGGCAGCTCGGCGAAGGCGGATTCGCGTTCGTGTTTCTGGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ..................................................
FY451835       <-- ..................................................
EX767245       <-- ..................................................
EW721732       <-- ..................................................
EW727059       <-- ..................................................
EX774192       <-- ..................................................
EV543066       <-- ..................................................
EV530378       <-- ..................................................
FD961033       <-- ..................................................
EY909813       <-- ..................................................
EX769796       <-- ..................................................
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> ATCGTGAGGCAGCTCGGCGAAGGCGGATTCGCGTTCGTGTTTCTGGTGAA
FY450589       --> ATCGTGAGGCAGCTCGGCGAAGGCGGATTCGCGTTCGTGTTTCTGGTGAA
EX888137       --> ATCGTGAGGCAGCTCGGCGAAGGCGGATTCGCGTTCGTGTTTCTGGTGAA
FY431493       --> ATCGTGAGGCAGCTCGGCGAAGGCGGATTCGCGTTCGTGTTTCTGGTGAA
FY431511       --> ATCGTGAGGCAGCTCGGCGAAGGCGGATTCGCGTTCGTGTTTCTGGTGAA
EV525706       --> ..................................................
EV551088       --> ..................................................
EX769949       --> ..................................................
EW718105       --> ..................................................
EW726389       --> ..................................................
EV539224       --> ..................................................

               201    -    251
UN11953        --> GGAGATTGTCGCCGACGCTTCGTCCGGTGGCGGTCTGGCGTCGAAAGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ..................................................
FY451835       <-- ..................................................
EX767245       <-- ..................................................
EW721732       <-- ..................................................
EW727059       <-- ..................................................
EX774192       <-- ..................................................
EV543066       <-- ..................................................
EV530378       <-- ..................................................
FD961033       <-- ..................................................
EY909813       <-- ..................................................
EX769796       <-- ..................................................
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> GGAGATTGTCGCCGACGCTTCGTCCGGTGGCGGTCTGGCGTCGAAAGTCA
FY450589       --> GGAGATTGTCGCCGACGCTTCGTCCGGTGGCGGTCTGGCGTCGAAAGTCA
EX888137       --> GGAGATTGTCGCCGACGCTTCGTCCGGTGGCGGTCTGGCGTCGAAAGTCA
FY431493       --> GGAGATTGTCGCCGACGCTTCGTCCGGTGGCGGTCTGGCGTCGAAAGTCA
FY431511       --> GGAGATTGTCGCCGACGCTTCGTCCGGTGGCGGTCTGGCGTCGAAAGTCA
EV525706       --> ................GCTTCGTCCGGTGGCGGTCTGGCGTCGAAAGTCA
EV551088       --> ......................................CGTCGAAAGTCA
EX769949       --> ..................................................
EW718105       --> ..................................................
EW726389       --> ..................................................
EV539224       --> ..................................................

               251    -    301
UN11953        --> AGGATCCAGCTCATCTCTCCGATGATGGAACTTATGCGATGAAGAAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ..................................................
FY451835       <-- ..................................................
EX767245       <-- ..................................................
EW721732       <-- ..................................................
EW727059       <-- ..................................................
EX774192       <-- ..................................................
EV543066       <-- ..................................................
EV530378       <-- ..................................................
FD961033       <-- ..................................................
EY909813       <-- ..................................................
EX769796       <-- ..................................................
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> AGGATCCAGCTCATCTCTCCGATGATGGAACTTATGCGATGAAGAAAGTT
FY450589       --> AGGATCCAGCTCATCTCTCCGATGATGGAACTTATGCGATGAAGAAAGTT
EX888137       --> AGGATCCAGCTCATCTCTCCGATGATGGAACTTATGCGATGAAGAAAGTT
FY431493       --> AGGATCCAGCTCATCTCTCCGATGATGGAACTTATGCGATGAAGAAAGTT
FY431511       --> AGGATCCAGCTCATCTCTCCGATGATGGAACTTATGCGATGAAGAAAGTT
EV525706       --> AGGATCCAGCTCATCTCTCCGATGATGGAACTTATGCGATGAAGAAAGTT
EV551088       --> AGGATCCAGCTCATTTCTCCGATGATGGAACTTATGCGATGAAGAAAGTT
EX769949       --> ..................................................
EW718105       --> ..................................................
EW726389       --> ..................................................
EV539224       --> ..................................................

               301    -    351
UN11953        --> CTGATTCAGAACAAGGAGCAGCTGGAACTGGTGCGGGAGGAGATTCGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ..................................................
FY451835       <-- ..................................................
EX767245       <-- ..................................................
EW721732       <-- ..................................................
EW727059       <-- ..................................................
EX774192       <-- ..................................................
EV543066       <-- ..................................................
EV530378       <-- ..................................................
FD961033       <-- ..................................................
EY909813       <-- ..................................................
EX769796       <-- ..................................................
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> CTGATTCAGAACAAGGAGCAGCTGGAACTGGTGCGGGAGGAGATTCGTGT
FY450589       --> CTGATTCAGAACAAGGAGCAGCTGGAACTGGTGCGGGAGGAGATTCGTGT
EX888137       --> CTGATTCAGAACAAGGAGCAGCTGGAACTGGTGCGGGAGGAGATTCGTGT
FY431493       --> CTGATTCAGAACAAGGAGCAGCTGGAACTGGTGCGGGAGGAGATTCGTGT
FY431511       --> CTGATTCAGAACAAGGAGCAGCTGGAACTGGTGCGGGAGGAGATTCGTGT
EV525706       --> CTGATTCAGAACAAGGAGCAGCTGGAACTGGTGCGGGAGGAGATTCGTGT
EV551088       --> CTGATTCAGAACAAGGAGCAGCTGGAACTGGTGCGGGAGGAGATTCGTGT
EX769949       --> ..............................................GTGT
EW718105       --> ...............................................gGT
EW726389       --> ..................................................
EV539224       --> ..................................................

               351    -    401
UN11953        --> TTCGTCTCTGTTCAGCCACCCTAATTTGCTTCCTCTCCTTGATCATGCC-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- .......................................TGATCATGCCC
FY451835       <-- ..................................................
EX767245       <-- ..................................................
EW721732       <-- ..................................................
EW727059       <-- ..................................................
EX774192       <-- ..................................................
EV543066       <-- ..................................................
EV530378       <-- ..................................................
FD961033       <-- ..................................................
EY909813       <-- ..................................................
EX769796       <-- ..................................................
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> TTCGTCTCTGTTCAGCCACCCTAATTTGCTTCCTCTCCTTGATCATGCC-
FY450589       --> TTCGTCTCTGTTCAGCCACCCTAATTTGCTTCCTCTCCTTGATCATGCC-
EX888137       --> TTCGTCTCTGTTCAGCCACCCTAATTTGCTTCCTCTCCTTGATCATGCC-
FY431493       --> TTCGTCTCTGTTCAGCCACCCTAATTTGCTTCCTCTCCTTGATCATGCC-
FY431511       --> TTCGTCTCTGTTCAGCCACCCTAATTTGCTTCCTCTCCTTGATCATGCC-
EV525706       --> TTCGTCTCTGTTCAGCCACCCTAATTTGCTTCCTCTCCTTGATCATGCC-
EV551088       --> TTCGTCTCTGTTCAGCCACCCTAATTTGCTTCCTCTCCTTGATCATGCC-
EX769949       --> TTCGTCCCTGTTCAACCACCCTAATTTGCTTCCTCTCCTTGATCATGCC-
EW718105       --> TTCGTCTCTGTCCAGCCACCCTAATTTGCTTCCTCCCCTTGATCATGCC-
EW726389       --> ..................................................
EV539224       --> ..................................................

               401    -    451
UN11953        --> ATTATTCCTGTTAAGGGTAGTGGCCAAGAGGGAGCTGGGAAACACGAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ATTATTCCTGTTAAGGGTAGTGGCCAAGAGGGAGCTGGGAAACACGAGGC
FY451835       <-- .............AGGGTAGTGCCCAAGAGGGAGCTGGGAAACACGAGGC
EX767245       <-- ..................................................
EW721732       <-- ..................................................
EW727059       <-- ..................................................
EX774192       <-- ..................................................
EV543066       <-- ..................................................
EV530378       <-- ..................................................
FD961033       <-- ..................................................
EY909813       <-- ..................................................
EX769796       <-- ..................................................
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> ATTATTCCTGTTAAGGGTAGTGGCCAAGAGGGAGCTGGGAAACACGAGGC
FY450589       --> ATTATTCCTGTTAAGGGTAGTGGCCAAGAGGGAGCTGGGAAACACGAGGC
EX888137       --> ATTATTCCTGTTAAGGGTAGTGGCCAAGAGGGAGCTGGGAAACACGAGGC
FY431493       --> ATTATTCCTGTTAAGGGTAGTGGCCAAGAGGGAGCTGGGAAACACGAGGC
FY431511       --> ATTATTCCTGTTAAGGGTAGTGGCCAAGAGGGAGCTGGGAAACACGAGGC
EV525706       --> ATTATTCCTGTTAAGGGTGGTGGCCAAGAGGGAGCTGGGAAACATGAGGC
EV551088       --> ATTATTCCTGTTAAGGGTGGTGGCCAAGAGGGAGCTGGGAAACATGAGGC
EX769949       --> ATTATTCCTGTTAAGGGTGGTGGCCAAGAGGGAGCTGGGAAACACGAGGC
EW718105       --> ATTATTCCTGTTAAGGGTAGTGGCCAAGAGGGAGCTGGGAAACACGAGGC
EW726389       --> ..................................................
EV539224       --> ..................................................

               451    -    501
UN11953        --> CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
FY451835       <-- CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
EX767245       <-- ...................CACCTGGATGGGAC-TTGCTGGATAATTCCA
EW721732       <-- ..................................................
EW727059       <-- ..................................................
EX774192       <-- ..................................................
EV543066       <-- ..................................................
EV530378       <-- ..................................................
FD961033       <-- ..................................................
EY909813       <-- ..................................................
EX769796       <-- ..................................................
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
FY450589       --> CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
EX888137       --> CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
FY431493       --> CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
FY431511       --> CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
EV525706       --> CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
EV551088       --> CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
EX769949       --> CTTCTTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
EW718105       --> CTTCCTGCTGTTTCCTGTTCACCTGGATGGGACCTTGCTGGATAATTCCA
EW726389       --> ..............CTGTTCACCTGGATGGGACCTTGCTGGATAATTCTA
EV539224       --> ..................................................

               501    -    551
UN11953        --> CGGCGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTCTTGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- CGGCGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus sativus cv GSK3-1
FY451835       <-- CGGCGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus sativus cv GSK3-1
EX767245       <-- CAGCTTTGAAGGCTAAGAGGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721732       <-- .............................TCAACAACTGATGTCTTGCAT  Raphanus sativus var. oleiformis
EW727059       <-- ..............................CAACAACTGATGTCTTGCAT  Raphanus sativus cv Early Scarlet Globe
EX774192       <-- ................................ACAACTGGTGTCTTGCAT  Raphanus raphanistrum subsp. landra
EV543066       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530378       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD961033       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY909813       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769796       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546255       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761541       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918965       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW727357       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY451369       --> CGGCGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus sativus cv GSK3-1
FY450589       --> CGGCGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus sativus cv GSK3-1
EX888137       --> CAGCTATGAAGGCTAAGAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus sativus var. oleiformis
FY431493       --> CGGCGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus sativus cv GSK3-1
FY431511       --> CGGCGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus sativus cv GSK3-1
EV525706       --> CAGCTATGAAGGCTAAGAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus raphanistrum subsp. maritimus
EV551088       --> CAGCTATGAAGGCTAAGAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769949       --> CGGCGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGGTGTCTTGCAT  Raphanus raphanistrum subsp. landra
EW718105       --> CAGCTATGAAGGCTAAGAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus sativus var. oleiformis
EW726389       --> CGGCGATGAAGGCTAAGAAGGAAACATTCTCAACAACTGATGTCTTGCAT  Raphanus sativus cv Early Scarlet Globe
EV539224       --> ....................................gTGATGTCTTGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN11953        --> ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
FY451835       <-- ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
EX767245       <-- ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
EW721732       <-- ATATT-CGTCAGCTTTGTGATGGACTCAA-CACATGCACTCTCTGGAGCC
EW727059       <-- ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
EX774192       <-- ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
EV543066       <-- ........TCAGCTTTGTGATGGACTTAAACACATGCACTCTCTGGAGCC
EV530378       <-- .............TTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
FD961033       <-- ........................CTCAAACACATGCACTCTCTGGAGCC
EY909813       <-- .........................TCAAACACATGCACTCTCTGGAGCC
EX769796       <-- ............................AACACATGCACTCTCTGGAGCC
EV546255       <-- ..................................................
EX761541       <-- ..................................................
EY918965       <-- ..................................................
EW727357       <-- ..................................................
FY451369       --> ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
FY450589       --> ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
EX888137       --> ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
FY431493       --> ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
FY431511       --> ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
EV525706       --> ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
EV551088       --> ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
EX769949       --> ATATTTCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
EW718105       --> ATATTTCGTCAGCTTTGTGATGGACTCAA-CACATGCACTCTCTGGAGCC
EW726389       --> ATATTTCGTCAGCATTGTGATGGACTCAAACACATGCACTCTCTGGAGCC
EV539224       --> ATATTTCGTCAGCTTTGTGATGGACTTAAACACATGCACTCTCTGGAGCC

               601    -    651
UN11953        --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTGACACGTA  Raphanus sativus cv GSK3-1
FY451835       <-- ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTGACACGTA  Raphanus sativus cv GSK3-1
EX767245       <-- ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721732       <-- ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA  Raphanus sativus var. oleiformis
EW727059       <-- ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA  Raphanus sativus cv Early Scarlet Globe
EX774192       <-- ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTGGCACGTA  Raphanus raphanistrum subsp. landra
EV543066       <-- ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTTTTAACACGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530378       <-- ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA  Raphanus raphanistrum subsp. maritimus
FD961033       <-- ACCATATTCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA  Raphanus raphanistrum subsp. maritimus
EY909813       <-- ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769796       <-- ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTGACACGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546255       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761541       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918965       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW727357       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY451369       --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTGACACGTA  Raphanus sativus cv GSK3-1
FY450589       --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTGACACGTA  Raphanus sativus cv GSK3-1
EX888137       --> ACCATATGCTCACAACGATGTCAA-CCTGGAAACGTGCTGTTAACAC...  Raphanus sativus var. oleiformis
FY431493       --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTGACACGTA  Raphanus sativus cv GSK3-1
FY431511       --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTGACACGTA  Raphanus sativus cv GSK3-1
EV525706       --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA  Raphanus raphanistrum subsp. maritimus
EV551088       --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769949       --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTGGCACGTA  Raphanus raphanistrum subsp. landra
EW718105       --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA  Raphanus sativus var. oleiformis
EW726389       --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTGTTAACACGTA  Raphanus sativus cv Early Scarlet Globe
EV539224       --> ACCATATGCTCACAACGATGTCAAACCTGGAAACGTGCTTTTAACACGTA  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN11953        --> GGAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- GAAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus sativus cv GSK3-1
FY451835       <-- GAAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus sativus cv GSK3-1
EX767245       <-- GGAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721732       <-- GGAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus sativus var. oleiformis
EW727059       <-- GGAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus sativus cv Early Scarlet Globe
EX774192       <-- GAAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. landra
EV543066       <-- GAAAAGGACAGACTCCTCTTGCCATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530378       <-- GGAAAGGACAGACTCCTCTCGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. maritimus
FD961033       <-- GGAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. maritimus
EY909813       <-- GGAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769796       <-- GAAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546255       <-- ..............................................TCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761541       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918965       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW727357       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY451369       --> GAAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus sativus cv GSK3-1
FY450589       --> Gaa...............................................  Raphanus sativus cv GSK3-1
EX888137       --> ..................................................  Raphanus sativus var. oleiformis
FY431493       --> GAAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus sativus cv GSK3-1
FY431511       --> GAAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus sativus cv GSK3-1
EV525706       --> GGAAAGGACAGACTCCTCTCGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. maritimus
EV551088       --> GGAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769949       --> GAAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. landra
EW718105       --> GGAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus sativus var. oleiformis
EW726389       --> GGAAAGGACAGACTCCTCTTGCGATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus sativus cv Early Scarlet Globe
EV539224       --> GAAAAGGACAGACTCCTCTTGCCATTTTGATGGACTTTGGGAGTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)

               701    -    751
UN11953        --> CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
FY451835       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EX767245       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EW721732       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAGGAGGCCTTACAGTTACAGGA
EW727059       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EX774192       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EV543066       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EV530378       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
FD961033       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EY909813       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EX769796       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EV546255       <-- CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EX761541       <-- ..........................TCAAGAGGCCTTACAGTTACAGGA
EY918965       <-- .....................................TACAGTTACAGGA
EW727357       <-- ..................................................
FY451369       --> CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
FY450589       --> ..................................................
EX888137       --> ..................................................
FY431493       --> CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
FY431511       --> CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EV525706       --> CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EV551088       --> CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EX769949       --> CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EW718105       --> CCTGCACGGAAGCAAATCCGCTCCCGTCAGGAGGCCTTACAGTTACAGGA
EW726389       --> CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA
EV539224       --> CCTGCACGGAAGCAAATCCGCTCCCGTCAAGAGGCCTTACAGTTACAGGA

               751    -    801
UN11953        --> ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
FY451835       <-- ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EX767245       <-- ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EW721732       <-- ATGGACATCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EW727059       <-- ATGGACATTTGAACATTTTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EX774192       <-- ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTTGG
EV543066       <-- ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EV530378       <-- ATGGACAGCTGAACATTCTTCAGCACCGTTTGGAGCTCCCGAGCTCTGGG
FD961033       <-- ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EY909813       <-- ATGGACAGCTGAACATTCTTCAGCACCCTTTAGAGCTCCCGAGCTCTGGG
EX769796       <-- ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EV546255       <-- ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EX761541       <-- ATGGACAGCTGAATATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EY918965       <-- ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EW727357       <-- ..........GAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
FY451369       --> ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
FY450589       --> ..................................................
EX888137       --> ..................................................
FY431493       --> ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
FY431511       --> ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EV525706       --> ATGGACAGCTGAACATTCTTCAGCACCGTTTGGAGCTCCCGAGCTCTGGG
EV551088       --> ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EX769949       --> ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTTGG
EW718105       --> ATGGACATCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EW726389       --> ATGGACATCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG
EV539224       --> ATGGACAGCTGAACATTCTTCAGCACCGTTTAGAGCTCCCGAGCTCTGGG

               801    -    851
UN11953        --> ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
FY451835       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EX767245       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EW721732       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EW727059       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATTTGGTCACTA
EX774192       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EV543066       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EV530378       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
FD961033       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EY909813       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTG
EX769796       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EV546255       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EX761541       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCATTA
EY918965       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EW727357       <-- ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
FY451369       --> ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
FY450589       --> ..................................................
EX888137       --> ..................................................
FY431493       --> ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
FY431511       --> ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EV525706       --> ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EV551088       --> ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EX769949       --> ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EW718105       --> ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EW726389       --> ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA
EV539224       --> ATTGCCCAAGCCATGCGGATATTGATGAGAGAACTGATATCTGGTCACTA

               851    -    901
UN11953        --> GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
FY451835       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EX767245       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EW721732       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EW727059       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTTTCCGTTTGAATATGT
EX774192       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EV543066       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EV530378       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
FD961033       <-- GGCTGCCCACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EY909813       <-- GGCCGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EX769796       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EV546255       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATACGT
EX761541       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EY918965       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EW727357       <-- GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
FY451369       --> GGCTGCACACTATACGCAATAATGTAC.......................
FY450589       --> ..................................................
EX888137       --> ..................................................
FY431493       --> GGCTGCACACTATACGCAATAATGTA........................
FY431511       --> GGCTGCACACTATACGCAATAATGTAC.......................
EV525706       --> GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EV551088       --> GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATACGT
EX769949       --> GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EW718105       --> GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EW726389       --> GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT
EV539224       --> GGCTGCACACTATACGCAATAATGTACGGTGTGTCTCCGTTTGAATATGT

               901    -    951
UN11953        --> ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus sativus cv GSK3-1
FY451835       <-- ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus sativus cv GSK3-1
EX767245       <-- ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGCGAACGCTAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721732       <-- ATTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus sativus var. oleiformis
EW727059       <-- ACTTGAAGAATTTGATGGAAGTTTTCAGCTTGCAATCGTTAATGCTAAGA  Raphanus sativus cv Early Scarlet Globe
EX774192       <-- ACTTGAAGAATTTGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus raphanistrum subsp. landra
EV543066       <-- ACTTGAAGAATCGGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530378       <-- ACTTGAAGAATCTGTTGGAAGTCTTCAGCTTGCAATCGTGAACGCTAAGA  Raphanus raphanistrum subsp. maritimus
FD961033       <-- ACTTGAAGAATTTGATGGAAGTCTTCAGCTTGCAATCGTGAACGCTAAGA  Raphanus raphanistrum subsp. maritimus
EY909813       <-- ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGTGAACGCTAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769796       <-- ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546255       <-- ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAGTCGTGAACACTAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761541       <-- ACTTGAAGAATCGGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918965       <-- ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus raphanistrum subsp. landra
EW727357       <-- ACTTGAAGAATTTGATGGAAGTTTTCAGCTTGCAATCGTTAATGCTAAGA  Raphanus sativus cv Early Scarlet Globe
FY451369       --> ..................................................  Raphanus sativus cv GSK3-1
FY450589       --> ..................................................  Raphanus sativus cv GSK3-1
EX888137       --> ..................................................  Raphanus sativus var. oleiformis
FY431493       --> ..................................................  Raphanus sativus cv GSK3-1
FY431511       --> ..................................................  Raphanus sativus cv GSK3-1
EV525706       --> ACTTGAAGAATCTGTTGGAAGTCTTCAGCTTGCAATCGTGAACGCTAAGA  Raphanus raphanistrum subsp. maritimus
EV551088       --> ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAGTCGTGAACACTAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769949       --> ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus raphanistrum subsp. landra
EW718105       --> ATTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus sativus var. oleiformis
EW726389       --> ACTTGAAGAATCTGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus sativus cv Early Scarlet Globe
EV539224       --> ACTTGAAGAATCGGATGGAAGTCTTCAGCTTGCAATCGTTAACGCTAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               951    -   1001
UN11953        --> TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
FY451835       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EX767245       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EW721732       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EW727059       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EX774192       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EV543066       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EV530378       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
FD961033       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EY909813       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EX769796       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EV546255       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EX761541       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EY918965       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
EW727357       <-- TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC
FY451369       --> ..................................................
FY450589       --> ..................................................
EX888137       --> ..................................................
FY431493       --> ..................................................
FY431511       --> ..................................................
EV525706       --> TCAAATGGCC........................................
EV551088       --> TCAAATGGCC........................................
EX769949       --> TCAAATGGCCAAAGGCAGacc.............................
EW718105       --> TCAAATGGCCAAAGGCAGGACCAAAG-CTTCGTATCCTGAAGCACTTCAC
EW726389       --> TCAAATGGCCAAAGGCAGGACCAAAG-CTTCGTATCCTGAAGCACTTCAC
EV539224       --> TCAAATGGCCAAAGGCAGGACCAAAGGCTTCGTATCCTGAAGCACTTCAC

               1001   -   1051
UN11953        --> CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
FY451835       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
EX767245       <-- CAGTTCGTGACTTGGATGCTGCAACCCCAGGCTGCGGTTCGACCTCGCAT
EW721732       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
EW727059       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGT-CGACCTCGCAT
EX774192       <-- CAGTTCGTAACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
EV543066       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
EV530378       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
FD961033       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
EY909813       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
EX769796       <-- CAGTTCGTAACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
EV546255       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
EX761541       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
EY918965       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT
EW727357       <-- CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGT-CGACCTCGCAT
FY451369       --> ..................................................
FY450589       --> ..................................................
EX888137       --> ..................................................
FY431493       --> ..................................................
FY431511       --> ..................................................
EV525706       --> ..................................................
EV551088       --> ..................................................
EX769949       --> ..................................................
EW718105       --> CAGTTCGTGACTTGGATGCTGCA-CCTCAG-CTGCGGT-CGA-CTCGCAT
EW726389       --> CAGTTCGTGACTTGGATGCTGCAACC........................
EV539224       --> CAGTTCGTGACTTGGATGCTGCAACCTCAGGCTGCGGTTCGACCTCGCAT

               1051   -   1101
UN11953        --> TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT  Raphanus sativus cv GSK3-1
FY451835       <-- TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT  Raphanus sativus cv GSK3-1
EX767245       <-- TGACGATATCATCATCCATGTCGACAAGTTGATCGCAAAATTCACCAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721732       <-- -GACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT  Raphanus sativus var. oleiformis
EW727059       <-- TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT  Raphanus sativus cv Early Scarlet Globe
EX774192       <-- TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT  Raphanus raphanistrum subsp. landra
EV543066       <-- TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530378       <-- TGACGATATCATCATCCATGTCGACAAGTTGATCGCAAAATTCACCAAGT  Raphanus raphanistrum subsp. maritimus
FD961033       <-- TGACGATATCATCATCCATGTCGACAAGTTGATCGCAAAATTCACCAAGT  Raphanus raphanistrum subsp. maritimus
EY909813       <-- TGACGATATCATCATCCATGTCGACAAGTTGATCGCAAAATTCACCAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769796       <-- TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546255       <-- TGACGATATCATCATCCATGTCGACAAGTTGATCGCAAAATTCACCAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761541       <-- TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918965       <-- TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCCCCAAGT  Raphanus raphanistrum subsp. landra
EW727357       <-- TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT  Raphanus sativus cv Early Scarlet Globe
FY451369       --> ..................................................  Raphanus sativus cv GSK3-1
FY450589       --> ..................................................  Raphanus sativus cv GSK3-1
EX888137       --> ..................................................  Raphanus sativus var. oleiformis
FY431493       --> ..................................................  Raphanus sativus cv GSK3-1
FY431511       --> ..................................................  Raphanus sativus cv GSK3-1
EV525706       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV551088       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769949       --> ..................................................  Raphanus raphanistrum subsp. landra
EW718105       --> -GACGATATCATCATC-ATGTCGACAA-TTGATCGCAAA--TCACC-AGT  Raphanus sativus var. oleiformis
EW726389       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV539224       --> TGACGATATCATCATCCATGTCGACAAATTGATCGCAAAATTCACCAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)

               1101   -   1151
UN11953        --> GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTAAAAAAGAAAAGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTTAAAAGAAAAAGGATT  Raphanus sativus cv GSK3-1
FY451835       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTTAAAAGAAAAAGGATT  Raphanus sativus cv GSK3-1
EX767245       <-- GATTCCCTATTCAGGTGGTATAATCTAAA--GTTAAAAAAGAAAAGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721732       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTTAAAAGAAAAAGGATT  Raphanus sativus var. oleiformis
EW727059       <-- GATTCCCTATTCAGGTGGTATAATTTAAAGAGTTAAAAAAGAAAAGGATT  Raphanus sativus cv Early Scarlet Globe
EX774192       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTTAAAAGAAAAAGGATT  Raphanus raphanistrum subsp. landra
EV543066       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTAAAAAAGAAAAGGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530378       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTAAAAAAGAAAAGGATT  Raphanus raphanistrum subsp. maritimus
FD961033       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTAAAAAAGAAAAGGATT  Raphanus raphanistrum subsp. maritimus
EY909813       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTAAAAAAGAAAAGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769796       <-- GATTCCCTATTCAGGTGGTATAATTTAAAGAGTTTAAAAGAAAAAGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546255       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTAAAAAAGAAAAGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761541       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTAAAAAAGAAAAGGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918965       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTAAAAAAGAAAAGGATT  Raphanus raphanistrum subsp. landra
EW727357       <-- GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTAAAAAAGAAAAGGATT  Raphanus sativus cv Early Scarlet Globe
FY451369       --> ..................................................  Raphanus sativus cv GSK3-1
FY450589       --> ..................................................  Raphanus sativus cv GSK3-1
EX888137       --> ..................................................  Raphanus sativus var. oleiformis
FY431493       --> ..................................................  Raphanus sativus cv GSK3-1
FY431511       --> ..................................................  Raphanus sativus cv GSK3-1
EV525706       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV551088       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769949       --> ..................................................  Raphanus raphanistrum subsp. landra
EW718105       --> GA-TCCCTATTCAGtgg.................................  Raphanus sativus var. oleiformis
EW726389       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV539224       --> GATTCCCTATTCAGGTGGTATAATCTAAAGAGTTAAAAAAGAAAAGGATT  Raphanus raphanistrum subsp. raphanistrum (MS)

               1151   -   1201
UN11953        --> TTAATATACATTACTTGCTCTCTTTATTTATATGTTTTAGCTATTTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTT-AGCTATTTTGAA  Raphanus sativus cv GSK3-1
FY451835       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTT-AGCTATTTTGAA  Raphanus sativus cv GSK3-1
EX767245       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTTTAGCTATTTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721732       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTT-AGCTATTTTGAA  Raphanus sativus var. oleiformis
EW727059       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTTTAGCTATTTTGAA  Raphanus sativus cv Early Scarlet Globe
EX774192       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTT-AGCTATTTTGAA  Raphanus raphanistrum subsp. landra
EV543066       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTT-AGCTATTTTGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530378       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTTTAGCTATTTTGAA  Raphanus raphanistrum subsp. maritimus
FD961033       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTTTAGCTATTTTGAA  Raphanus raphanistrum subsp. maritimus
EY909813       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTTTAGCTATTTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769796       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTT-AGCTATTTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546255       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTTTAGCTATTTTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761541       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTT-AGCTATTTTGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918965       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTTTAGCTATTTTGAA  Raphanus raphanistrum subsp. landra
EW727357       <-- TTAATATACATTACTTGCTCTCTTTATTTATATGTTTTAGCTATTTTGAA  Raphanus sativus cv Early Scarlet Globe
FY451369       --> ..................................................  Raphanus sativus cv GSK3-1
FY450589       --> ..................................................  Raphanus sativus cv GSK3-1
EX888137       --> ..................................................  Raphanus sativus var. oleiformis
FY431493       --> ..................................................  Raphanus sativus cv GSK3-1
FY431511       --> ..................................................  Raphanus sativus cv GSK3-1
EV525706       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV551088       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769949       --> ..................................................  Raphanus raphanistrum subsp. landra
EW718105       --> ..................................................  Raphanus sativus var. oleiformis
EW726389       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV539224       --> TTAATATACATTACTTGCTCTCTTTATTTATATGTTT-AGCTATTTTGAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               1201   -   1251
UN11953        --> AATTCCCATATTAGATACATATTAAACCACATGATATTTTCGTTTTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- AATTCCCATATTAGATACATATTAAACCACATAATATTTTCGTTTTATCT  Raphanus sativus cv GSK3-1
FY451835       <-- AATTCCCATATTAGATACATATTAAACCACATAATATTTTCGTTTTATCT  Raphanus sativus cv GSK3-1
EX767245       <-- AATTCCCATATTAGATACATATTAAACCACATGATATTTTCGCTTTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721732       <-- AATTCCCATATTAGATACATATTAAACCACATAATATTTTCGTTTTATCT  Raphanus sativus var. oleiformis
EW727059       <-- AATTCCCATATTAGATACATATTAAACCACATGATATTTTCGTTTTATCT  Raphanus sativus cv Early Scarlet Globe
EX774192       <-- AATTCCCATATTAGATACATATTAAACCACATAATATTTTCGTTTTATCT  Raphanus raphanistrum subsp. landra
EV543066       <-- AATTCCCATATTAGATACATATTAAACCACATAATATTTTCGTTTTATCc  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530378       <-- AATTCCCATATTAGATACATATTAAACCACATGATATTTTCGCTTTATCT  Raphanus raphanistrum subsp. maritimus
FD961033       <-- AATTCCCATATTAGATACATATTAAACCACATGATATTTTCGCTTTATCT  Raphanus raphanistrum subsp. maritimus
EY909813       <-- AATTCCCATATTAGATACATATTAAACCACATGATATTTTCGCTTTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769796       <-- AATTCCCATATTAGATACATATTAAACCACATAATATTTTCGTTTTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546255       <-- AATTCCCATATTAGATACATATTAAACCACATGATATTTTCGCTTTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761541       <-- AATTCCCATATTAGATACATATTAAACCACATAATATTTTCGTTTTATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918965       <-- AATTCCCATATTAGATACATATTAAACCACATGATATTTTCGTTTTATCT  Raphanus raphanistrum subsp. landra
EW727357       <-- AATTCCCATATTAGATACATATTAAACCCCATGATATTTTCGTTTTATCT  Raphanus sativus cv Early Scarlet Globe
FY451369       --> ..................................................  Raphanus sativus cv GSK3-1
FY450589       --> ..................................................  Raphanus sativus cv GSK3-1
EX888137       --> ..................................................  Raphanus sativus var. oleiformis
FY431493       --> ..................................................  Raphanus sativus cv GSK3-1
FY431511       --> ..................................................  Raphanus sativus cv GSK3-1
EV525706       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV551088       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769949       --> ..................................................  Raphanus raphanistrum subsp. landra
EW718105       --> ..................................................  Raphanus sativus var. oleiformis
EW726389       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV539224       --> AATTCCCATATTAGATACATATTAAACCACATAATATTTTCGTTTTATCc  Raphanus raphanistrum subsp. raphanistrum (MS)

               1251   -   1301
UN11953        --> ATTTGTAAGACGTCTTTTTAAAATAATGTTATTTATCAGACAGATAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ATT-GTAAGACTTCTT..................................  Raphanus sativus cv GSK3-1
FY451835       <-- ATT-GTAAGACTTCTTTT................................  Raphanus sativus cv GSK3-1
EX767245       <-- ATTTGTAAGACGTCTTTTT...............................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721732       <-- ATTTGTAAGACTTCTTTTTAAAATAATGTTATTTATCAGACAGATAACAA  Raphanus sativus var. oleiformis
EW727059       <-- ATTTGTAAGACGTCTTTTTAAAATAATGTTATTTATCAGACAGATAACAA  Raphanus sativus cv Early Scarlet Globe
EX774192       <-- ATTTGTAAGACTTCTTTTTAAAATAATGTTATTTATCAGACAGATAACAA  Raphanus raphanistrum subsp. landra
EV543066       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530378       <-- ATTTGTAAGACGTCTTTTTAAAATAATGTTATTTATCAGACAG.......  Raphanus raphanistrum subsp. maritimus
FD961033       <-- ATTTGTAAGACGTCTTTTTAAAATAATGTTATTTATCAGAC.........  Raphanus raphanistrum subsp. maritimus
EY909813       <-- ATTTGTAAGACGTCTTTTTAAAATAATGTTATTTATCAGACAGATAACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769796       <-- ATTTGTAAGACTTCTTTTTAAAATAATGTTATTTATCAGAC.........  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546255       <-- ATTTGTAAGACGTCTTTTTAAAATAATGTTATTTATCAGAC.........  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761541       <-- ATTTGTAAGACTTCTTTTTAAAATAATGTTATTTATCAGACAGATAACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918965       <-- ATTTGTAAGACGTCTTTTTAAAATAATGTTATTTATCAGACAGATAACAA  Raphanus raphanistrum subsp. landra
EW727357       <-- ATTTGTAAGACGTCTTTTTAAAAT..........................  Raphanus sativus cv Early Scarlet Globe
FY451369       --> ..................................................  Raphanus sativus cv GSK3-1
FY450589       --> ..................................................  Raphanus sativus cv GSK3-1
EX888137       --> ..................................................  Raphanus sativus var. oleiformis
FY431493       --> ..................................................  Raphanus sativus cv GSK3-1
FY431511       --> ..................................................  Raphanus sativus cv GSK3-1
EV525706       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV551088       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769949       --> ..................................................  Raphanus raphanistrum subsp. landra
EW718105       --> ..................................................  Raphanus sativus var. oleiformis
EW726389       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV539224       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               1301   -   1351
UN11953        --> TTTTATATATGTTTTTAATTGCTGTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430761       <-- ............................
FY451835       <-- ............................
EX767245       <-- ............................
EW721732       <-- TTTTATATATGTTTTTAATTGCTGTT..
EW727059       <-- TTT.........................
EX774192       <-- TTTTATATATGTTTTcg...........
EV543066       <-- ............................
EV530378       <-- ............................
FD961033       <-- ............................
EY909813       <-- TTTTATATATGTTTTTAATTGCTGTT..
EX769796       <-- ............................
EV546255       <-- ............................
EX761541       <-- TTTT........................
EY918965       <-- TTTTATATATGTTTTTAATTGCTATTAG
EW727357       <-- ............................
FY451369       --> ............................
FY450589       --> ............................
EX888137       --> ............................
FY431493       --> ............................
FY431511       --> ............................
EV525706       --> ............................
EV551088       --> ............................
EX769949       --> ............................
EW718105       --> ............................
EW726389       --> ............................
EV539224       --> ............................