-2     -     48
UN12075        --> ...GACCCACACCGGTGAGAGTAAAGAGAAAGAGAAGATGATTCTGATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- ...GACCCACACCGGTGAGAGTAAAGAGAAAGAGAAGATGAT-CTGATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555494       <-- ..gGACCCACACCAGTGAGAGT-CAGAGAAAGAGAAGATGATTCTGATGC  Raphanus raphanistrum subsp. landra
EV544039       <-- ggtcACCCACACCGGTGAGAGTAAAGAGAAAGAGAAGATGATTCTGATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555642       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD977504       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985485       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD550721       --> ..gGACCCACACCGGTGAGAGTAAAGAGAAAGAGAAGATGATTCTGATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559855       --> ..gGACCCACACCAGTGAGAGTTCAGAGAAAGAGAAGATGATTCTGATGC  Raphanus raphanistrum subsp. landra
FD560011       --> ..gGACCCACACCAGTGAGAGTTCAGAGAAAGAGAAGATGATTCTGATGC  Raphanus raphanistrum subsp. landra
FD981810       --> ..gGACCCACACCGGTGAGAGTAAAGAGAAAGAGAAGATGATTCTGATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989737       --> ..gGACCCACACCAGTGAGAGTTCAGAGAAAGAGAAGATGATTCTGATGC  Raphanus raphanistrum subsp. landra
EV548355       --> ggtcACCCACACCGGTGAGAGTAAAGAGAAAGAGAAGATGATTCTGATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550445       --> ...................gtgAAAGAGAAAGAGAAGATGATTCTGATGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               48     -     98
UN12075        --> TTTCTTACTCTCCGGCGATAATATCAGCCGTTAAATATCAGAGCTCGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- TTTCTTACTCTCCGGCGATAATATCAGCCGTTAAATATCAGAGCTCGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555494       <-- TCTCTTACTCTCCGGCGATAATCTCAGCCGTTAAATATCTGGGCTCGTCT  Raphanus raphanistrum subsp. landra
EV544039       <-- TTTCTTACTCTCCGGCGATAATATCAGCCGTTAAATATCAGAGCTCGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555642       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD977504       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985485       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD550721       --> TTTCTTACTCTCCGGCGATAATATCAGCCGTTAAATATCAGAGCTCGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559855       --> TCTCTTACTCTCCGGCGATAATCTCAGCCGTTAAATATCTGGGCTCGTCT  Raphanus raphanistrum subsp. landra
FD560011       --> TCTCTTACTCTCCGGCGATAATCTCAGCCGTTAAATATCTGGGCTCGTCT  Raphanus raphanistrum subsp. landra
FD981810       --> TTTCTTACTCTCCGGCGATAATATCAGCCGTTAAATATCAGAGCTCGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989737       --> TCTCTTACTCTCCGGCGATAATCTCAGCCGTTAAATATCTGGGCTCGTCT  Raphanus raphanistrum subsp. landra
EV548355       --> TTTCTTACTCTCCGGCGATAATATCAGCCGTTAAATATCAGAGCTCGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550445       --> TTTCTTACTCTCCGGCGATAATATCAGCCGTTAAATATCAGAGCTCGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               98     -    148
UN12075        --> CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTATGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555494       <-- CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTAGACA  Raphanus raphanistrum subsp. landra
EV544039       <-- CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTATGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555642       <-- ................................TATCTCGATCTCTAGACA  Raphanus raphanistrum subsp. landra
FD977504       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985485       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD550721       --> CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTATGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559855       --> CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTAGACA  Raphanus raphanistrum subsp. landra
FD560011       --> CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTAGACA  Raphanus raphanistrum subsp. landra
FD981810       --> CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTATGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989737       --> CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTAGACA  Raphanus raphanistrum subsp. landra
EV548355       --> CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTATGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550445       --> CCGTTCAACACTCGACGACTTTCTCAGCCTAGTATCTCGATCTCTATGAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               148    -    198
UN12075        --> CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGATAAAAGAAGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGATAAAAGAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555494       <-- CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGAGAAAAGAAGAAGAA  Raphanus raphanistrum subsp. landra
EV544039       <-- CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGATAAAAGAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555642       <-- CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGAGAAAAGAAGAAGAA  Raphanus raphanistrum subsp. landra
FD977504       <-- ...............................................GAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985485       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD550721       --> CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGATAAAAGAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559855       --> CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGAGAAAAGAAGAAGAA  Raphanus raphanistrum subsp. landra
FD560011       --> CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGAGAAAAGAAGAAGAA  Raphanus raphanistrum subsp. landra
FD981810       --> CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGATAAAAGAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989737       --> CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGAGAAAAGAAGAAGAA  Raphanus raphanistrum subsp. landra
EV548355       --> CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGATAAAAGAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550445       --> CAAAAGCTTCTTCTTACACTTGACAGAGACGAAAGATAAAAGAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               198    -    248
UN12075        --> GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGATGTTTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGATGTTTCCG
FD555494       <-- GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGAT-TTTCCG
EV544039       <-- GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGATGTTTCCG
FD555642       <-- GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGAT-TTTCCG
FD977504       <-- GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGATGTTTCCG
FD985485       <-- .AGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGATGTTTCCG
FD550721       --> GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGATGTTTCCG
FD559855       --> GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGAT-TTTCCG
FD560011       --> GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGAT-TTTCCG
FD981810       --> GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGATGTTTCCG
FD989737       --> GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGATGTTTCCG
EV548355       --> GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGATGTTTCCG
FD550445       --> GAGAAAATGGGAGAGTATCGATCGTGTGTGACGCAGGAGGGATGTTTCCG

               248    -    298
UN12075        --> GTGGACCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCTCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- GTGGACCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555494       <-- GTGGACCCCTGGGCTCCAACCATTGATTCACAGAGCATAGCATCGCAGCT  Raphanus raphanistrum subsp. landra
EV544039       <-- GTGGACCCATGGGCTCCAACCACTGATTCACAGAGCATAGCATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555642       <-- GTGGACCCCTGGGCTCCAACCATTGATTCACAGAGCATAGCATCGCAGCT  Raphanus raphanistrum subsp. landra
FD977504       <-- GTGGACCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985485       <-- GTGGACCCCTGGGCTCCAACCATTGATTCACAGAGCATAGCATCGCAGCT  Raphanus raphanistrum subsp. landra
FD550721       --> GTGGACCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559855       --> GTGGACCCCTGGGCTCCAACCATTGATTCACAGAGCATAGCATCGCAGCT  Raphanus raphanistrum subsp. landra
FD560011       --> GTGGACCCCTGGGCTCCAACCATTGATTCACAGAGCATAGCATCGCAGCT  Raphanus raphanistrum subsp. landra
FD981810       --> GTGGACCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989737       --> GTGGACCCCTGGGCTCCAACCATTGATTCACAGAGCATAGCATCGCAGCT  Raphanus raphanistrum subsp. landra
EV548355       --> GTGGACCCATGGGCTCCAACCACTGATTCACAGAGCATAGCATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550445       --> GTGGACCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               298    -    348
UN12075        --> CTTCGCGGTGTCTCTGTTTCCGTACATAGGTTTCCTCTACTTCCTCACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- CTTCGCGGTGTCTCTGTTTCCGTACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555494       <-- CTTCGCGGTGTCTCTGTTTCCATACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. landra
EV544039       <-- CTTCGCGGTGTCTCTGTTTCCGTACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555642       <-- CTTCGCGGTGTCTCTGTTTCCATACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. landra
FD977504       <-- CTTCGCGGTGTCTCTGTTTCCGTACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985485       <-- CTTCGCGGTGTGTCTGTTTCCATACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. landra
FD550721       --> CTTCGCGGTGTCTCTGTTTCCGTACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559855       --> CTTCGCGGTGTCTCTGTTTCCATACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. landra
FD560011       --> CTTCGCGGTGTCTCTGTTTCCATACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. landra
FD981810       --> CTTCGCGGTGTCTCTGTTTCCGTACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989737       --> CTTCGCGGTGTCTCTGTTTCCATACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. landra
EV548355       --> CTTCGCGGTGTCTCTGTTTCCGTACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550445       --> CTTCGCGGTGTCCCTGTTTCCGTACATAGGTTTCCTCTACTTCCTCACTA  Raphanus raphanistrum subsp. raphanistrum (NY)

               348    -    398
UN12075        --> AGTCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- AGTCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555494       <-- AATCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. landra
EV544039       <-- AGTCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTTTACTTCTTGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555642       <-- AATCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. landra
FD977504       <-- AGTCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985485       <-- AATCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. landra
FD550721       --> AGTCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559855       --> AATCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. landra
FD560011       --> AATCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. landra
FD981810       --> AGTCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989737       --> AATCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. landra
EV548355       --> AGTCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550445       --> AGTCCAAAACTGCTCCGAAGCTCACACTTTTCGGATTCTACTTCTTGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               398    -    448
UN12075        --> GCCTTCGTCGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- GCCTTCGTCGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555494       <-- GCCTTCGTTGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. landra
EV544039       <-- GCCTTCGTCGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555642       <-- GCCTTCGTTGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. landra
FD977504       <-- GCCTTCGTCGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985485       <-- GCCTTCGTTGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. landra
FD550721       --> GCCTTCGTCGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559855       --> GCCTTCGTTGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. landra
FD560011       --> GCCTTCGTTGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. landra
FD981810       --> GCCTTCGTCGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989737       --> GCCTTCGTTGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. landra
EV548355       --> GCCTTCGTCGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550445       --> GCCTTCGTCGGAGCTACAATACCTGCTGGGATATATGCTAAGGTGCATTA  Raphanus raphanistrum subsp. raphanistrum (NY)

               448    -    498
UN12075        --> TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- TGGAACATCATTG-CAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
FD555494       <-- TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
EV544039       <-- TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
FD555642       <-- TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
FD977504       <-- TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
FD985485       <-- TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
FD550721       --> TGGAACATCATTG-CAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
FD559855       --> TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
FD560011       --> TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
FD981810       --> TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
FD989737       --> TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
EV548355       --> TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC
FD550445       --> TGGAACATCATTGTCAAACGTTGATTGGTTACATGGAGGAGCTGAATCAC

               498    -    548
UN12075        --> TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTTTCAGACAAGCTTTG
FD555494       <-- TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG
EV544039       <-- TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTTTCAGACAAGCTTTG
FD555642       <-- TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTTTCAGACAAGCTTTG
FD977504       <-- TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG
FD985485       <-- TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG
FD550721       --> TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG
FD559855       --> TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG
FD560011       --> TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG
FD981810       --> TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG
FD989737       --> TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG
EV548355       --> TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG
FD550445       --> TTCTTGCTCTCACCAATTTGTTCATCGTGTTGGGTCTCAGACAAGCTTTG

               548    -    598
UN12075        --> CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
FD555494       <-- CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
EV544039       <-- CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
FD555642       <-- CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
FD977504       <-- CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
FD985485       <-- CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
FD550721       --> CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
FD559855       --> CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
FD560011       --> CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
FD981810       --> CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
FD989737       --> CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
EV548355       --> CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA
FD550445       --> CGCAAGTCTGAAGATAATGATGAAGATACTCCAACCACAACGAGTCAACA

               598    -    648
UN12075        --> AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC
FD555494       <-- AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC
EV544039       <-- AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-GATGATATGTATTC
FD555642       <-- AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC
FD977504       <-- AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC
FD985485       <-- AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC
FD550721       --> AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC
FD559855       --> AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC
FD560011       --> AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC
FD981810       --> AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC
FD989737       --> AGAA..............................................
EV548355       --> AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGGGGATGATATGTATTC
FD550445       --> AGAACAAGAAAAATCTTCAGTCTAGTAAAATATGG-AATGATATGTATTC

               648    -    698
UN12075        --> TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATAACGAGGTGAGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATA-CGAGGTGAGATTT
FD555494       <-- TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATAACGAGGTGAGATTG
EV544039       <-- TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATAACGAGGTGAGATTG
FD555642       <-- TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATAACGAGGTGAGATTG
FD977504       <-- TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATAACGAGGTGAGATTG
FD985485       <-- TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATAACGAGGTGAGATTG
FD550721       --> TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATA-CGA-GTGAGATTT
FD559855       --> TTCTTCCTTTTTTGTCGCCATCAG..........................
FD560011       --> TTCTTCCTTTTT-GTCGCCATCAGATTT-ATTAATAACGAGGTGAGATTG
FD981810       --> TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATA..............
FD989737       --> ..................................................
EV548355       --> TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATAACGAGGTGAGATTG
FD550445       --> TTCTTCCTTTTTTGTCGCCATCAGATTTTATTAATAACGAGGTG......

               698    -    748
UN12075        --> ATACAACACCAATGTCGAGCTTGATATGTAGTCTTTTTACTTTTAGGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- ATACAACACCAATGTCGAGCTTGATATGTAGTCTTTTTACTTTTAGGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555494       <-- ATACAACACCAATGTCGAGCTTGATATGTATTCTTTTTACTTTTAGGAAT  Raphanus raphanistrum subsp. landra
EV544039       <-- ATACAACACCAATGTCGAGCTTGATATGTAGTCTTTTTACTTTT......  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555642       <-- ATACAACACCAATGTCGAGCTTGATATGTATTCTTTTTACTTTTAGGAAT  Raphanus raphanistrum subsp. landra
FD977504       <-- ATACAACACCAATGTCGAGCTTGATATGTAGTCTTTTTACTTTTAGGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985485       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD550721       --> ATACAACACCAATGTCGAGCTTGATATGTAGTCTTTTTACTTTTAGGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559855       --> ..................................................  Raphanus raphanistrum subsp. landra
FD560011       --> ATACA-CACCAATGTCGAGCTTGATATGTATTCTTTTTACTTTagatt..  Raphanus raphanistrum subsp. landra
FD981810       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989737       --> ..................................................  Raphanus raphanistrum subsp. landra
EV548355       --> ATACAACACCAATGTCGAGCTTGATATGTAGTCTTTTTACTT........  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550445       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               748    -    798
UN12075        --> TTTACTCAAAAGTTTAATTAATTAGGGTTATAATAAAATGGCATCTATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546639       <-- TTTACTCAAAAGTTTAATTAATTAGGGTTATAATAAAATGGCATCTATTA
FD555494       <-- TTTACTCAAAAGTTTAATT...............................
EV544039       <-- ..................................................
FD555642       <-- TTTACTCAAAAGTTTAATT...............................
FD977504       <-- TTTACTCAAAAGTTTAATTAATTAGGGTTAT...................
FD985485       <-- ..................................................
FD550721       --> TTac..............................................
FD559855       --> ..................................................
FD560011       --> ..................................................
FD981810       --> ..................................................
FD989737       --> ..................................................
EV548355       --> ..................................................
FD550445       --> ..................................................

               798    -    848
UN12075        --> ATATG
                   ~~~~~
FD546639       <-- ATATG
FD555494       <-- .....
EV544039       <-- .....
FD555642       <-- .....
FD977504       <-- .....
FD985485       <-- .....
FD550721       --> .....
FD559855       --> .....
FD560011       --> .....
FD981810       --> .....
FD989737       --> .....
EV548355       --> .....
FD550445       --> .....