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Alignment for radish unigene UN12086

               1      -     51
UN12086        --> GACAGTGTGATTGTGTGGAGGAGATTGACGATGGAGAATAACAAAAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- ..................................................
EW728930       <-- ..................................................
FD945579       <-- ..................................................
FD583864       <-- ..................................................
FD980608       --> GACAGTGTGATTGTGTGGAGGAGATTGACGATGGAGAATAACAAAAGATG
EW733938       --> ............ggGTGGAGGAGATTGACGATGGAGAATAACAAAAGATG
FD560346       --> .............gGTGGAGGAGATTGACGATGGAGAATAACAAAAGATG
EX902496       --> ....................ggGATTGACGATGGAGAATAACAAAAGATG
EY915631       --> .................gggtggagTGACGATGGAGAATAACAAAAGATG
FD980865       --> .................gggtggagTGACGATGGAGAATAACAAAAGATG
EY941392       --> .........................gGACGATGGAGAATAACAAAAGATG
FD950012       --> .........................gggCGATGGAGAGTAACAAAAGATG
FD552194       --> ..................................................
EW724692       --> ..................................................

               51     -    101
UN12086        --> GTCCCTCGCCGGAAAAACCGCTCTGGTAACCGGTGGTACTCGCGGAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW728930       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD945579       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD583864       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD980608       --> GTCCCTCGCCGGAAAAACCGCTCTGGTAACCGGTGGTACTCGCGGAATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW733938       --> GTCCCTCGCCGGAAAAACCGCTCTGGTAACCGGTGGTACTCGCGGAATTG  Raphanus sativus cv Rat-Tail Radish #3870
FD560346       --> GTCCCTCGCCGGAAAAACCGCTCTGGTAACCGGTGGTACTCGCGGAATTG  Raphanus raphanistrum subsp. landra
EX902496       --> GTCCCTCGCTGGAAAAACCGCTCTGGTAACCGGTGGTACTCGCGGAATTG  Raphanus sativus cv Rat-Tail Radish #3870
EY915631       --> GTCCCTCGCCGGAAAAACTGCTCTGGTAACCGGTGGTACTCGCGGAATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980865       --> GTCCCTCGCCGGAAAAACTGCTCTGGTAACCGGTGGTACTCGCGGAATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY941392       --> GTCCCTCGCTGGAAAAACCGCTCTGGTAACCGGTGGTACTCGCGGAATTG  Raphanus sativus cv Early Scarlet Globe
FD950012       --> GTCCCTCGCTGGAAAAACCGCTCTGGTAACCGGTGGTACTCGCAGAATTG  Raphanus sativus cv Early Scarlet Globe
FD552194       --> ...................GCTATGGTAACCGGTGGTACTCGCGGAATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW724692       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               101    -    151
UN12086        --> GGCGAGCGGTAGTGGAGGAGCTAGCGAGATTCGGTGCAACAGTTCATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- GGCGAGCGGTAGTGGAGGAGCTAGCGAGATTCGGTGCAACAGTTCATACC
EW728930       <-- ..................................................
FD945579       <-- ..................................................
FD583864       <-- ..................................................
FD980608       --> GGCGAGCGGTAGTGGAGGAGCTAGCGAGATTCGGTGCAACAGTTCATACC
EW733938       --> GGCGAGCGGTAGTGGAGGAGCTAGCGAGATTCGGTGCAACAGTTCATACC
FD560346       --> GGCGAGCGGTAGTGGAGGAGCTGGCGAGATTCGGTGCAACAGTTCATACA
EX902496       --> GGCGAGCGGTAGTGGAGGAGCTAGCGAGATTCGGTGCGACAGTTCATACA
EY915631       --> GGCGAGCGGTAGTGGAGGAGCTAGCGAGATTCGGTGCAACAGTTCACACA
FD980865       --> GGCGAGCGGTAGTGGAGGAGCTAGCGAGATTCGGTGCAACAGTTCACACA
EY941392       --> GGCGAGCGGTAGTGGAGGAGCTAGCGAGATTCGGTGCAACAGTTCATACA
FD950012       --> GGCGAGCGGTAGTGGAGGAGCTAGCGAGATTCGGTGCAACAGTTCATACA
FD552194       --> GGCGAGCGGTAGTGGAGGAGCTAGCGAGATTCGGTGCAACAGTTCACACA
EW724692       --> ......................gGCGAGATTCGGTGCAACAGTTCGTACA

               151    -    201
UN12086        --> TGTTCAAGGAACCAGGAGGAGCTCAAATCATGCTTGGATGATTGGAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- TGCTCAAGGAACCAGGACGAGCTCAAATCATGCTTGGATGATTGGAAGTC
EW728930       <-- ........................AAATCATGCTTGGATGATTGGAAGTC
FD945579       <-- ..................................................
FD583864       <-- ..................................................
FD980608       --> TGCTCAAGGAACCAGGACGAGCTCAAATCATGCTTGGATGATTGGAAGTC
EW733938       --> TGCTCAAGGAACCAGGACGAGCTCAAATCATGCTTGGATGATTGGAAGTC
FD560346       --> TGTTCAAGGAACCAGGAGGAGCTCAAATCATGCTTGGATGATTGGAAGTC
EX902496       --> TGTTCAAGGAACCAGGAGGAGCTCAAATCATGCTTGGATGATTGGAAGTC
EY915631       --> TGTTCAAGGAACCAGGAGGAGCTCAAATCATGCTTGGATGATTGGAAGTC
FD980865       --> TGTTCAAGGAACCAGGAGGAGCTCAAATCATGCTTGGATGATTGGAAGTC
EY941392       --> TGTTCAAGGAACCAGGAGGAGCTCAAATCATGCTTGGATGATTGGAAGTC
FD950012       --> TGTTCAAGGAACCAGGAGGAGCTCAAATCATGCTTGGATGATTGGAAGTC
FD552194       --> TGTTCAAGGAACCAGGAGGAGCTCAAATCATGCTTGGATGATTGGAAGTC
EW724692       --> TGTTCAAGGAACCAGGAGGAGCTCAAATCATGCTTGGATGATTGGAAGTC

               201    -    251
UN12086        --> CAATGGTTTAGCGGTAACCGGTTCGGTCTGCGATGCTTCGGATAGGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- CAATGGTTTAGCGGTTACCGGTTCGGTTTGTGATGCTTCGGATAGAGATC
EW728930       <-- CAATGGTTTAGCGGTAACCGGTTCGGTCTGCGATGCTTCGGATAGGGATC
FD945579       <-- .................................................C
FD583864       <-- ..................................................
FD980608       --> CAATGGTTTAGCGGTTACCGGTTCGGTTTGTGATGCTTCGGATAGAGATC
EW733938       --> CAATGGTTTAGCGGTTACCGGTTCGGTTTGTGATGCTTCGGATAGAGATC
FD560346       --> CAATGGTTTAGCGGTAACCGGTTCGGTTTGCGATGCTTCGGATAGGGATC
EX902496       --> CAATGGTTTAGCGGTAACCGGTTCGGTCTGCGATGCTTCGGATAGGGATC
EY915631       --> CAATGGTTTAGCGGTAACCGGTTCGGTCTGCGATGTTTCGGATAGGGATC
FD980865       --> CAATGGTTTAGCGGTAACCGGTTCGGTCTGCGATGCTTCGGATAGGGATC
EY941392       --> CAATGGTTTAGCGGTAACCGGTTCGGTCTGCGATGCTTCGGATAGGGATC
FD950012       --> CAATGGTTTAGCGGTAACCGGTTCGGTCTGCGATGCTTCGGATAGGGATC
FD552194       --> CAATGGTTTAGCGGTAACCGGTTCGGTCTGCGATGCTTCGGATAGGGATC
EW724692       --> CAATGGTTTAGCGGTAACCGGTTCGGTCTGCGATGCTTCGGATAGGGATC

               251    -    301
UN12086        --> AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
EW728930       <-- AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
FD945579       <-- AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCCTTAGCGGCAAGCTC
FD583864       <-- ..................................................
FD980608       --> AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
EW733938       --> AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
FD560346       --> AGAGGGAGAATTTGATTGAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
EX902496       --> AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
EY915631       --> AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
FD980865       --> AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
EY941392       --> AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
FD950012       --> AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCCTTAGCGGCAAGCTC
FD552194       --> AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC
EW724692       --> AGAGGGAGAAGTTGATTCAGGAAGTTTCGTCTGCCTTTAGCGGCAAGCTC

               301    -    351
UN12086        --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
EW728930       <-- AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
FD945579       <-- AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
FD583864       <-- ..................................................
FD980608       --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
EW733938       --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
FD560346       --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
EX902496       --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
EY915631       --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
FD980865       --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
EY941392       --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
FD950012       --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
FD552194       --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA
EW724692       --> AACATCCTTATAAACAATGTTGGAACTAATATAAGGAAACCAACAGTGGA

               351    -    401
UN12086        --> GTACACGAGTGAGGATTATGCTAAAATCATGTCGATCAACTTGGAATCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- GTACACGAGTGAGGATTACGCTAAAATCATGTCGGTCAACTTGGAATCCG
EW728930       <-- GTACACGAGTGAGGATTATGCTAAAATCATGTCGATCAACTTGGAATCCG
FD945579       <-- GTACACGAGTGGGGATTATGCTAAAATCATGTCGATCAACTTGGAATCCG
FD583864       <-- ..................................................
FD980608       --> GTACACGAGTGAGGATTACGCTAAAATCATGTCGGTCAACTTGGAATCCG
EW733938       --> GTACACGAGTGAGGATTACGCTAAAATCATGTCGGTCAACTTGGAATCCG
FD560346       --> GTACTCAAGTGAGGATTATGCTAAAATCATGTCGATCAACTTGGAATCCG
EX902496       --> GTACACGAGTGAGGATTATGCTAAAATCATGTCGATCAACTTGGAATCCG
EY915631       --> GTACACGAGCGATGATTATGCTAAAATCATGTCGATCAACTTGGAATCCG
FD980865       --> GTACACGAGCGATGATTATGCTAAAATCATGTCGATCAACTTGGAATCCG
EY941392       --> GTA...............................................
FD950012       --> GTACACGAGTGGGGATTATGCTAAAATCATGTCGATCAACTTGGAATCCG
FD552194       --> GTACACGAGCGATGATTATGCTGAAATCATGTCGATCAACTTGGAATCCG
EW724692       --> GTACACGAGTGAGGATTATGCTAAAATCATGTCGATCAACTTGGAATCCG

               401    -    451
UN12086        --> CTTTCCATTTTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- CTTTCCATATTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
EW728930       <-- CTTTCCATTTTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
FD945579       <-- CTTTCCATTTTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
FD583864       <-- ..................................................
FD980608       --> CTTTCCATATTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
EW733938       --> CTTTCCATATTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
FD560346       --> CTTTCCATTTTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
EX902496       --> CTTTCCATTTTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
EY915631       --> CTTTCCATTTTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
FD980865       --> CTTTCCATTCTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
EY941392       --> ..................................................
FD950012       --> CTTTCCATTTTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
FD552194       --> CTTTCCATTTTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT
EW724692       --> CTTTCCATTTTTCCCAAATTGCACATCCTCTTTTAAAAGCATCTGGGGTT

               451    -    501
UN12086        --> GGTAGCATTGTGTTCATCTCCTCTGTGGCTGGACTGGTTCATCTTAGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- GGTAGTATTGTGTTCATCTCCTCTGTGGCTGGACTGGTTCATCTTAGTAG
EW728930       <-- GGTAGCATTGTGTTCATCTCCTCTGTGGCTGGACTGGTTCATCTTAGTAG
FD945579       <-- GGTAGCATTGTGTTCATCTCCTCTGTGGCTGGACTGGTTCATCTTAGTAG
FD583864       <-- ..................................................
FD980608       --> GGTAGTATTGTGTTCATCTCCTCTGTGGCTGGACTGGTTCATCTTAGTAG
EW733938       --> GGTAGTATTGTGTTCATCTCCTCTGTGGCTGGACTGGTTCATCTTAGTAG
FD560346       --> GGTAGCATTGTGTTCATCTCCTCTGTGGCTGGGCTGGTTCATCTTAGTAG
EX902496       --> GGTAGCATTGTGTTCATCTCCTCTGTGGCTGGACTGGTTCATCTTAGTAG
EY915631       --> GTTAGCATTGTGTTCATCTCCTCTGTGGCTGGGCTGGTTCATCTTAGTAG
FD980865       --> GGTAGCATTGTGTTCATCTCCTCTGTGGCTGGGCTGGTTCATCTTAGTAG
EY941392       --> ..................................................
FD950012       --> GGTAGCATTGTGTTCATCTCCTCTGTGGCTGGACTGGTTCATCTTAGTAG
FD552194       --> GGTAGCATTGTGTTCATCTCCTCTGTGGCTGGGCTGGTTCATCTTAGTAG
EW724692       --> GGTAGCATTGTGTTCATCTCCTCTGTGGCTGGACTGGTTCATCTTAGTAG

               501    -    551
UN12086        --> TGGATCTGTCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- TGGATCTGTCTACGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
EW728930       <-- TGGATCTGTCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
FD945579       <-- TGGATCTGTCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
FD583864       <-- .............GGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
FD980608       --> TGGATCTGTCTACGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
EW733938       --> TGGATCTGTCTACGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
FD560346       --> TGGATCTGTCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
EX902496       --> TGGATCTGTCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
EY915631       --> TGGATCTGTCTATGGTGCAACTAAAGGAGTACTTAATCAGCTTACAAGGA
FD980865       --> TGGATCTGTCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGAA
EY941392       --> ..................................................
FD950012       --> TGGATCTGTCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
FD552194       --> TGGATCTGTCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA
EW724692       --> TGGATCTGTCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGGA

               551    -    601
UN12086        --> ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCG
EW728930       <-- ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCG
FD945579       <-- ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGCGGCG
FD583864       <-- ACCTAGCTTGGGAATGGGCAGGGGACAACATCAGAACCAATTGCGGGGCG
FD980608       --> ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCG
EW733938       --> ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCG
FD560346       --> ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCA
EX902496       --> ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCG
EY915631       --> ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCA
FD980865       --> ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCA
EY941392       --> ..................................................
FD950012       --> ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGCGGCG
FD552194       --> ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCA
EW724692       --> ACCTAGCTTGCGAATGGGCAGGGGACAACATCAGAACCAATTGCGTGGCG

               601    -    651
UN12086        --> CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAAAGG
EW728930       <-- CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAACGG
FD945579       <-- CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAAAGG
FD583864       <-- CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAAAGG
FD980608       --> CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAAAGG
EW733938       --> CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAAAGG
FD560346       --> CCGTGGTACATCAAGACCTCACTTATGAAACCGCTACTTGAGAAGAAAGG
EX902496       --> CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAAAGG
EY915631       --> CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTAC.............
FD980865       --> CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAAAGG
EY941392       --> ..................................................
FD950012       --> CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAAAGG
FD552194       --> CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAAAGG
EW724692       --> CCGTGGTACATCAAGACCTCACTTGTGAAACCGCTACTTGAGAAGAACGG

               651    -    701
UN12086        --> TTTTGAGGAGGCGGTGGTTTCGCGTACCCCACTTGGGCGCGTTGGAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- TTTTGAGGAGGCGGTGGTTTCGCGTACCCCACTTGGGCGCGTTGGAGAAC
EW728930       <-- TTTTGAGGAGGCGGTGGTTTCGCGTACCCCACTTGGGCGCGTTGGAGAAC
FD945579       <-- TTTTGAGGAGGCGGTGGTTTCGCGTACCCCACTTGGGCGCGTTGGAGAAC
FD583864       <-- TTTTGAGGAGGCGGTGGTTTCGCGTACCCCACTTGGGCGCGTTGGAGAAC
FD980608       --> TTTTGAGGAGGCGGTGGTTTCGCGTACCCCACTTGGGCGCGTTGGAGAcc
EW733938       --> TTT-GAGGAGGCG-TGGTTTCGCGTACCCCACTTGGGCGCGTTGGAGA-C
FD560346       --> TTTTGAG...........................................
EX902496       --> TTTTGAGGAGGCGGTGGTTTCGCGTACCCCACTTGGGCGCGTTGGAGA-C
EY915631       --> ..................................................
FD980865       --> TTTTGAAGAGGCGGTGGTTTCGCGTACC......................
EY941392       --> ..................................................
FD950012       --> TTTTGAGGAGGCGGTGGTTTCGCG..........................
FD552194       --> TTTTGAAGAGGCGGTGGTTTCGCGTACC......................
EW724692       --> TTTTGAGGAGGCGGTGGTTTCGCGTACCCCACTTGGGCGCGTTGGAGAAC

               701    -    751
UN12086        --> CAGAGGAAGTCTCGTCGCTGGTTGCTTTCCTCTGCCTTCCCGCAGCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- CAGAGGAAGTCTTGTCGCTAGTTGCTTTTCTCTGCCTTCCCGCAGCTTCT
EW728930       <-- CAGAGGAAGTCTCGTCGCTGGTTGCTTTCCTCTGCCTTCCCGCAGCTTCT
FD945579       <-- CAGAGGAAGTCTCGTCGCTGGTTGCTTTCCTCTGCCTTCCCGCAGCTTCT
FD583864       <-- CAGAGGAAGTTTCGTCGCTGGTTGCTTTCCTTTGCCTTCCCGCAGCTTTT
FD980608       --> ..................................................
EW733938       --> CAGAGGAAGTCTCGTCGCTAGTTGCTTTTCTCT.................
FD560346       --> ..................................................
EX902496       --> CAGAGGAAGTCTCGTCGCTGGTTGCTTTCCTCTGCCTTCC-GCAGCTTCT
EY915631       --> ..................................................
FD980865       --> ..................................................
EY941392       --> ..................................................
FD950012       --> ..................................................
FD552194       --> ..................................................
EW724692       --> CAGAGGAAGTCTCGTCGCTGGTTGCTTTCCTCTGCCTTCCCGCAGCTTCT

               751    -    801
UN12086        --> TACATCACCGGTCAGGTCATTTCTGTTGACGGAGGATTCACAGTCAACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- TACATCACCGGTCAGGTCATTTCTGTTAACGGAGGATTCACAGTCAACGG
EW728930       <-- TACATCACCGGTCAGGTCATTTCTGTTGACGGAGGATTCACAGTCAACGG
FD945579       <-- TACATCACCGGTCAGGTCATTTCTGTTGACGGAGGATTCACAGTCAACGG
FD583864       <-- TACATCACCGGTCAGGTCATTTTTGTTGACGGAGGATTCACAGTCAACGG
FD980608       --> ..................................................
EW733938       --> ..................................................
FD560346       --> ..................................................
EX902496       --> TACATCACCGGTCAG-TCATTTCTGTTGACGGAGGAT-CACAGTC.....
EY915631       --> ..................................................
FD980865       --> ..................................................
EY941392       --> ..................................................
FD950012       --> ..................................................
FD552194       --> ..................................................
EW724692       --> TACATCACCGGTCAGGTCATTTCTGTTGACGGAGGATTCACAGTCAACGG

               801    -    851
UN12086        --> CTTCAGTTACACCATATAGTCAAAATCTCTCATCGCAACTTTTACTAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- CTTCAGTTACACCATATAGTCAAAACCTCTC---ATAACTTTTACTAATA
EW728930       <-- CTTCAGTTACACCATATAGTCAAAATCTCTCATCGCAACTTTTGCTAATA
FD945579       <-- CTTCAGTTACACCATATAGTCAAAATCTCTCATCGCAACTTTTACTAATA
FD583864       <-- CTTCAGTTACACCATATAGTCAAAATCTTTCATCGCAACTTTTACTAATA
FD980608       --> ..................................................
EW733938       --> ..................................................
FD560346       --> ..................................................
EX902496       --> ..................................................
EY915631       --> ..................................................
FD980865       --> ..................................................
EY941392       --> ..................................................
FD950012       --> ..................................................
FD552194       --> ..................................................
EW724692       --> CTTCAGTTACACCATATAGTCAAAATCTCTCATCGCAACTTTTGCTAATA

               851    -    901
UN12086        --> ATAAAACAAGAACTCGTTCGTGTGGTTTCTTCCCATTCGTCTTGTTTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- ATAAAACAAGAACTCGTTCGTGTGGTTTCTTCCt................
EW728930       <-- ATAAAACAAGAACTCGTTCGTGTGGTTTCTTCCCATTCGTCTTGTTTGCC
FD945579       <-- ATAAAACAAGAACTCGTTCGTGTGGTTTCTTCCCATTCGTCTTGTTTGCC
FD583864       <-- ATAAAACAAGAACTCGTTCGTGTGGTTTCTTCCCATTCGTCTTGTTTGCC
FD980608       --> ..................................................
EW733938       --> ..................................................
FD560346       --> ..................................................
EX902496       --> ..................................................
EY915631       --> ..................................................
FD980865       --> ..................................................
EY941392       --> ..................................................
FD950012       --> ..................................................
FD552194       --> ..................................................
EW724692       --> ATAAAACAAGAACTCGTTCGTGTGGTTTCTTCCCATTCGTCTTGTTTGCC

               901    -    951
UN12086        --> TCTGTTATTAAGAATACTAGGATGTGGACCTCCGCGGAAAGTTAATATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976475       <-- ..................................................
EW728930       <-- TCTGTTATTAAGAATACTAGGATGTGGACCTCCGCGGAAAGTTAATATCA
FD945579       <-- TCTGTTATTAAGAATACTAGGATGTGGACCTCCGCGGAAAGTTAATATCA
FD583864       <-- TCTGTTATTAAGAATACTAGGATGTGGACCTCCGCGGAAAGTTAATATCA
FD980608       --> ..................................................
EW733938       --> ..................................................
FD560346       --> ..................................................
EX902496       --> ..................................................
EY915631       --> ..................................................
FD980865       --> ..................................................
EY941392       --> ..................................................
FD950012       --> ..................................................
FD552194       --> ..................................................
EW724692       --> TCTGTTATTAAGAATACTAGGATGTGGACCTCt.................

               951    -   1001
UN12086        --> AGTTTTCAATATG
                   ~~~~~~~~~~~~~
FD976475       <-- .............
EW728930       <-- AGTTTTCAATATt
FD945579       <-- AGTTTTCAATATt
FD583864       <-- AGTTTTCAATATG
FD980608       --> .............
EW733938       --> .............
FD560346       --> .............
EX902496       --> .............
EY915631       --> .............
FD980865       --> .............
EY941392       --> .............
FD950012       --> .............
FD552194       --> .............
EW724692       --> .............