RadishBase

| | | |
Alignment for radish unigene UN13039

               1      -     51
UN13039        --> GAGAGCTCTCTTTGTGCAGCCGACTCTTTTGTTGCTAGATGAACCCACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> GAGAGCTCTCTTTGTGCAGCCGACTCTTTTGTTGCTAGATGAACCCACCA
EY938084       --> ......gCTCTTTGTGCAGCCGACTCTTTTGTTGCTAGATGAACCCACCA
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> ..................................................
FD947312       --> ..................................................

               51     -    101
UN13039        --> ACCATCTTGACCTGAGAGCTGTTCTCTGGTTGGGGGAGTATCTCTGTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> ACCATCTTGACCTGAGAGCTGTTCTCTGGTTGGGGGAGTATCTCTGTCGC
EY938084       --> ACCATCTTGACCTGAGAGCTGTTCTCTGGTTGGAGGAGTATCTCTGTCGC
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> ..................................................
FD947312       --> ..................................................

               101    -    151
UN13039        --> TGGAAGAAGACGTTGGTCGTTGTTTCCCACGACCGTGACTTCCTCAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> TGGAAGAAGACGTTGGTCGTTGTTTCCCACGACCGTGACTTCCTCAACAC
EY938084       --> TGGAAGAAGACGTTGGTCGTTGTTTCCCACGACCGTGACTTCCTCAACAC
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> ..................................................
FD947312       --> ..................................................

               151    -    201
UN13039        --> TGTCTGCACGGATATAATACATTTGCACGACCAGAATCTCCACTTCTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> TATCTGCACGGATATAATACATTTGCACGACCAGAATCTCCACTTCTACC
EY938084       --> TGTCTGCACGGATATAATACATTTGCACGACCAGAATCTCCACTTCTACC
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> ..................................................
FD947312       --> ..................................................

               201    -    251
UN13039        --> GTGGCAACTTCGATAGTTTCGAAAGTGGATACGAGCGGCGACGCAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> GTG-CAACTTCGATAGTTTCGAAAGTGGATACGAGCGGCGACGCAAGGAG
EY938084       --> GTGGCAACTTCGATAGTTTCGAAAGTGGATACGAGCAGCGACGCAAGGAG
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> ..................................................
FD947312       --> ..................................................

               251    -    301
UN13039        --> ATGAACAAAAAGTTTGAGATTTACGATAAACAGGTTAAAGCAGCTAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> ATGAACAAAAAGTTTGAGATTTACGATAAACAGGTTAAAGCAGCTAAGAG
EY938084       --> ATGAACAAAAAGTTTGAGATTTACGATAAACAGGTTAAAGCAGCTAAGAG
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> ..................................................
FD947312       --> ..................................................

               301    -    351
UN13039        --> ATCTGGAAACCGTGCTCAGCAGGAGAAGGTAAAGGACAAGGCCAAGTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> ATCTGGAAACCGTGCTCAGCAGGAGAAGGTAAAGGACAAGGCCAAGTTCA
EY938084       --> ATCTGGAAACCGTGCTCAGCAGGAGAAGGTAAAGGACAAGGCCAAGTTCA
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> ..................................................
FD947312       --> ..................................................

               351    -    401
UN13039        --> CTGCGGCGAAAGAAGCATCCAAGAGTAAGGGAAAAGGTAAGGCGGATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> CTGCGGCGAAAGAAGCATCCAAGAGTAAGGGAAAAGGTAAGGCGGATGGC
EY938084       --> CTGCGGCGAAAGAAGCATCCAAGAGTAAGGGAAAAGGTAAGGCGGATGGC
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> ..................................................
FD947312       --> ..................................................

               401    -    451
UN13039        --> CCAGCACCTGAAGCTCCGAGAAAGTGGAGAGACTATAGCGTTGAGTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> CCAGCACCTGAAGCTCCGAGAAAGTGGAGAGACTATAGCGTTGAGTTTCA
EY938084       --> CCAGCACCTGAAGCTCCGAGAAAGTGGAGAGACTATAGCGTTGAGTTTCA
EY924412       --> ....................gAAGTGGAGAGACTATAGCGTTGAGTTTCA
EY924570       --> ....................gAAGTGGAGAGACTATAGCGTTGAGTTTCA
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> ..................................................
FD947312       --> ..................................................

               451    -    501
UN13039        --> TTTCCCGGAACCAACCGAGCTCACTCCTCCTCTCCTGCAGTTGATCGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> TTTCCCGGAACCAACCGAGCTCACTCCTCCTCTCCTGCAGTTGATCGAGG
EY938084       --> TTTCCCGGAACCAACCGAGCTCACTCCTCCTCTCCTGCAGTTGATCGAGG
EY924412       --> TTTCCCAGAACCAACCGAGCTCACTCCTCCTCTCCTGCAGTTGATCGAGG
EY924570       --> TTTCCCAGAACCAACCGAGCTCACTCCTCCTCTCCTGCAGTTGATCGAGG
EY899376       --> ...............gGAGCTCACCCCTCCTCTCCTGCAGTTGATCGAGG
EX895548       --> ..................................................
EX765410       --> ..................................................
FD947312       --> ..................................................

               501    -    551
UN13039        --> TTAGCTTCTGCTACCCGAATAGACCAGACTTCAGGCTCTCGGATGTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> TTAGCTTCTGCTGCCCGAATAGACCAGACTTCAGGCTCTCAGATGTTGAT
EY938084       --> TTAGCTTCTGCTACCCGAATAGACCAGACTTCAGGCTCTCAGATGTTGAT
EY924412       --> TTAGCTTCTGCTACCCGAATAGACCAGACTTCAGGCTCTCGGATGTTGAT
EY924570       --> TTAGCTTCTGCTACCCGAATAGACCAGACTTCAGGCTCTCGGATGTTGAT
EY899376       --> TTAGCTTCTGCTACCCGAACAGACCAGACTTCAGGCTCTCAGATGTTGAT
EX895548       --> ..................gTAGACCAGACTTCAGGCTCTCGGATGTTGAT
EX765410       --> ..................................................
FD947312       --> ..................................................

               551    -    601
UN13039        --> GTGGGTATCGATATGGGTACAAGGGTCGCTATAGTTGGGCCTAATGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..............................................GAGC
EX776947       <-- ..................................................
EY920066       <-- ..................................................
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> GTGGGTATTGATATGGGTACAAGGGTCGCTATAGTTGGGCCTAATGGAGC
EY938084       --> GTGGGTATTGATATGGGTACAAGGGTCGCTATAGTTGGGCCTAATGGAGC
EY924412       --> GTGGGTATCGATATGGGTACAAGGGTCGCTATAGTTGGGCCTAATGGAGC
EY924570       --> GTGGGTATCGATATGGGTACAAGGGTCGCTATAGTTGGGCCTAATGGAGC
EY899376       --> GTGGGTATCGATATGGGGACAAGGGTCGCTATAGTTGGGCCTAATGGAGC
EX895548       --> GTGGGTATCGATATGGGTACAAGGGTCGCTATAGTTGGGCCTAACGGAGC
EX765410       --> ..................................................
FD947312       --> ..................................................

               601    -    651
UN13039        --> TGGAAAGTCCACTCTTTTGAACCTTCTTGCTGGAGATTTAGTTCCGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- TGGAAAGTCCACTCTTTTGAACCTTCTTGCTGGAGATTTAGTTCCGAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776947       <-- ...........................TGCTGGAGATTTAGTTCCCAGTG  Raphanus raphanistrum subsp. landra
EY920066       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX769198       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920199       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD571425       --> TGGAAAGTCCACTCTTTTGAACCTTCTTGCTGGAGATTTAGTTCCGAGTG  Raphanus sativus cv Early Scarlet Globe
EY938084       --> TGGAAAGTCCACTCTTTTGAACCTTCTTGCTGGAGATTTAGTTCCGAGTG  Raphanus sativus cv Early Scarlet Globe
EY924412       --> TGGAAAGTCCACTCTTTTGAACCTTCTTGCTGGAGATTTAGTTCCCAGTG  Raphanus raphanistrum subsp. landra
EY924570       --> TGGAAAGTCCACTCTTTTGAACCTTCTTGCTGGAGATTTAGTTCCCAGTG  Raphanus raphanistrum subsp. landra
EY899376       --> TGGAAAGTCCACTCTTTTGAACCTTCTTGCTGGAGATTTAGTTCCGAGTG  Raphanus raphanistrum subsp. maritimus
EX895548       --> TGGAAAGTCCACTCTTTTGAACCTTCTTGCTGGAGATTTGGTTCCGAGTG  Raphanus sativus cv Early Scarlet Globe
EX765410       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947312       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN13039        --> AAGGTGAAGTGAGAAGAAGCCAGAAGCTGAGGATTGGGAGATACTCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- AAGGTGAAGTGAGAAGAAGCCAGAAGCTGAGGATTGGGAGATACTCTCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776947       <-- AAGGTGAAGTGAGAAGAAGCCAGAAGCTGAGGATTGGGAGATATTCTCAG  Raphanus raphanistrum subsp. landra
EY920066       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX769198       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920199       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD571425       --> AAGGTGAAGTGAGAAGAAGCCAGAAGCTGAG-ATTGGGAGATACTCTCAG  Raphanus sativus cv Early Scarlet Globe
EY938084       --> AAAGTGAAGTGAGAAGAAGCCAGAAGCT......................  Raphanus sativus cv Early Scarlet Globe
EY924412       --> AAGGTGAAGTGAGAAGAAGCCAGAAGCTGAGGATTGGGAGATATTCTCAG  Raphanus raphanistrum subsp. landra
EY924570       --> AAGGTGAAGTGAGAAGAAGCCAGAAGCTGAGGATTGGGAGATATTCTCAG  Raphanus raphanistrum subsp. landra
EY899376       --> AAGGTGAAGTGAGAAGAAGCCAAAAGCTGAGGATTGGGAGATACTCTCAG  Raphanus raphanistrum subsp. maritimus
EX895548       --> AAGGTGAAGTGAGAAGAAGCCAGAAGCTGAGGATTGGGAGATACTCTCAG  Raphanus sativus cv Early Scarlet Globe
EX765410       --> ............................................gCTCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947312       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               701    -    751
UN13039        --> CACTTTGTTGACCTGTTAACAATGGGGGAGACACCAGTTCAGTATCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- CACTTTGTTGACCTGTTAACAATGGGGGAGACACCAGTTCAGTATCTGCT
EX776947       <-- CACTTTGTTGACCTGTTAACAATGGGGGAGACACCAGTTCAGTATCTGCT
EY920066       <-- ................TAACAATGGGGGAGACACCAGTTCAGTATCTGCT
EX769198       <-- ..................................................
EY920199       <-- ..................................................
FD571425       --> CACTTTGTTGACCTGTTAACAATGGGGGAGACACCAGTTCAGTATCTctc
EY938084       --> ..................................................
EY924412       --> CACTTTGTTGACCTGTTAACAATGGGGGAGACACCAGTTCAGTATCTGCT
EY924570       --> CACTTTGTTGACCTGTTAACAATGGGGGAGACACCAGTTCAGTATCTGCT
EY899376       --> CACTTTGTTGACCTGTTAACAATGGGGGAAACACCAGTTCAGTATCTGCT
EX895548       --> CACTTTGTTGACCTGTTAACAATGGGGGAAACACCAGTTCAGTATCTGCT
EX765410       --> CACTTTGTTGACCTGTTAACAATGGGGGAGACACCAGTTCAGTATCTGCT
FD947312       --> ...............................................GCT

               751    -    801
UN13039        --> CCGCCTTCATCCTGACCAAGAGGGATTTAGCAAACAGGAAGCTGTGCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- CCGCCTTCATCCTGACCAAGAGGGATTTAGCAAGCAGGAAGCTGTGCGTG
EX776947       <-- CCGCCTTCATCCTGACCAAGAGGGATTTAGCAAACAGGAAGCTGTGCGTG
EY920066       <-- CCGCCTTCATCCTGACCAAGAGGGATTTAGCAAACAGGAAGCTGTGCGTG
EX769198       <-- ...............CCAATAGGGATTTAGCAAACAGGAAGCTGTGCGTG
EY920199       <-- ...............CCAAGAGGGATTTAGCAAACAGGAAGCTGTGCGTG
FD571425       --> ..................................................
EY938084       --> ..................................................
EY924412       --> CCGCCTTCATCCTGACCAAGAGGGATTTAGCAAACAGGAAGCTGTGCGTG
EY924570       --> CCGCCTTCATCCTGACCAAGAGGGATTTAGCAAACAGGAAGCTGTGCGTG
EY899376       --> CCGCCTTCATCCTGACCAAGAGGGATTTAGCAAACAGGAAGCTGTGCGTG
EX895548       --> CCGCCTTCATCCTGACCAAGAGGGATTTAGCAAACAGGAAGCTGTGCGTG
EX765410       --> CCGCCTTCATCCTGACCAATAGGGATTTAGCAAACAGGAAGCTGTGCGTG
FD947312       --> CCGCCTTCATCCTGACCAAGAGGGATTTAGCAAACAGGAAGCTGTGCGTG

               801    -    851
UN13039        --> CTAAGCTAGGCAAGTTTGGGCTACCGAGTCACAACCACTTGACTCCGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- CTAAGCTAGGCAAGTTTGGGCTACCGAGTCACAACCACTTGACTCCGATC
EX776947       <-- CTAAGCTAGACAAGTTTGGGCTACCGAGTCACAACCACTTGACTCCGATC
EY920066       <-- CTAAGCTAGGCAAGTTTGGGCTACCGAGTCACAACCACTTGACTCCGATC
EX769198       <-- CTAAGCTAGGCAAGTTTGGGCTACCGAGTCACAACCACTTGACTCCGATC
EY920199       <-- CTAAGCTAGGCAAGTTTGGGCTACCGAGTCACAACCACTTGACTCCGATC
FD571425       --> ..................................................
EY938084       --> ..................................................
EY924412       --> CTAAGCTAGGCAAGTTTGGGCTACCGAGTCACAACCACTTGACTCCGATC
EY924570       --> CTAAGCTAGGCAAGTTTGGGCTACCGAGTCACAACCACTTGACTCCGATC
EY899376       --> CTAAGCTAGGCAAGTTTGGGCTCCCGAGTCACAACCACTTGACTCCGATT
EX895548       --> CTAAGCTAGGCAAGTTTGGGCTACCGAGTCACAACCACTTGACTCCGATC
EX765410       --> CTAAGCTAGGCAAGTTTGGGCTACCGAGTCACAACCACTTGACTCCGATC
FD947312       --> CCAAGCTAGGCAAGTTTGGGCTACCTAGTCACAACCACTTGACTCCGATC

               851    -    901
UN13039        --> ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACTTCGATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACTTCGATTTC
EX776947       <-- ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACTTCGATCTC
EY920066       <-- ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACTTCGATCTC
EX769198       <-- ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACCTCGATCTC
EY920199       <-- ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACTTCGATCTC
FD571425       --> ..................................................
EY938084       --> ..................................................
EY924412       --> ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACTTCGATCTC
EY924570       --> ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACTTCGATCTC
EY899376       --> ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACTTCGATCTC
EX895548       --> ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACTTCGATCTC
EX765410       --> ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACCTCGATCTC
FD947312       --> ATGAAACTGTCCGGTGGACAAAAAGCTAGAGTTGTGTTCACTTCGATCTC

               901    -    951
UN13039        --> AATGTCTAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- AATGTCTAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
EX776947       <-- AATGTTTAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
EY920066       <-- AATGTCTAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
EX769198       <-- AATGTCGAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
EY920199       <-- AATGTCTAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
FD571425       --> ..................................................
EY938084       --> ..................................................
EY924412       --> AATGTCTAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
EY924570       --> AATGTCTAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
EY899376       --> AATGTCGAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
EX895548       --> AATGTCTAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
EX765410       --> AATGTCGAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG
FD947312       --> AATGTCTAAGCCACACATTTTGCTTCTTGACGAGCCTACGAATCACTTAG

               951    -   1001
UN13039        --> ACATGCAGAGCATAGATGCGTTGGCTGATGCGCTAGAGGAGTTCAGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ACATGCAGAGCATAGATGCGTTGGCTGATGCGCTAGAGGAGTTCAGTGGA
EX776947       <-- ACATGCAGAGCATAGATGCGTTGGCTGATGCGCTAGGGGAGTTCAGTGGA
EY920066       <-- ACATGCAGAGCATAGATGCGTTGGCTGATGCGCTAGAGGAGTTCAGTGGA
EX769198       <-- ACATGCAGAGTATAGATGCGTTGGCTGATGCGCTAGACGAGTTCAGTGGA
EY920199       <-- ACATGCAGAGCATAGATGCGTTGGCTGATGCGCTAGAGGAGTTCAGTGGA
FD571425       --> ..................................................
EY938084       --> ..................................................
EY924412       --> ACATGCAGAGCATAGATGCGTTGGCTGATGCGCTAGAGGAGTTCAGTGGA
EY924570       --> ACATGCAGAGCATAGATGCGTTGGCTGATGCGCTAGAGGAGTTCAGTGGA
EY899376       --> ACATGCAGAGCATAGATGCGTTGGCTGATGCGCTAGAGGAGTTCAGTGGA
EX895548       --> ACATGCAGAGCATAGATGCGTTGGCTGATGCGCTAGAGGAGTTCAGTGGA
EX765410       --> ACATGCAGAGTATAGATGCGTTGGCTGATGCGCTAGACGAGTTCAGTGGA
FD947312       --> ACATGCAGAGCATAGATGCGTTGGCTGATGCGCTAGACGAGTTCAGTGGA

               1001   -   1051
UN13039        --> GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATTTCGCGTGTCTGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- GGAGTTGTGCTGGTGAGTCACGACTCTAGGCTTATTTCGCGTGTCTGCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776947       <-- GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATTTCGCGTGTCTGTGA  Raphanus raphanistrum subsp. landra
EY920066       <-- GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATTTCGCGTGTCTGTGA  Raphanus raphanistrum subsp. landra
EX769198       <-- GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATATCACGCGTCTGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920199       <-- GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATTTCGCGTGTCTGTGA  Raphanus raphanistrum subsp. landra
FD571425       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938084       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY924412       --> GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATTTCGCGTGTCTGTG.  Raphanus raphanistrum subsp. landra
EY924570       --> GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATTTCGCGTGTCTGTGA  Raphanus raphanistrum subsp. landra
EY899376       --> GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATTTCGCGTGTCTGTGA  Raphanus raphanistrum subsp. maritimus
EX895548       --> GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATATCACGCGTCTGTGA  Raphanus sativus cv Early Scarlet Globe
EX765410       --> GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATATCACGCGTCTGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947312       --> GGAGTTGTGCTGGTGAGTCACGACTCTAGACTTATATCACGTGTCTGTGA  Raphanus sativus cv Early Scarlet Globe

               1051   -   1101
UN13039        --> GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAGACGGAACAGTGTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAGACGGAACTGTGTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776947       <-- GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAGACGGAACAGTGTCTT  Raphanus raphanistrum subsp. landra
EY920066       <-- GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAGACGGAACAGTGTCTT  Raphanus raphanistrum subsp. landra
EX769198       <-- GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAGACGGAACTGTGTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920199       <-- GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAGACGGAACAGTGTCTT  Raphanus raphanistrum subsp. landra
FD571425       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938084       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY924412       --> ..................................................  Raphanus raphanistrum subsp. landra
EY924570       --> GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAGACGGAACAGTGTCTT  Raphanus raphanistrum subsp. landra
EY899376       --> GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAG...............  Raphanus raphanistrum subsp. maritimus
EX895548       --> GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAGACGGAACTGTGTCTT  Raphanus sativus cv Early Scarlet Globe
EX765410       --> GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAGACGGAACTGTGTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947312       --> GGATGAGGAGAAGAGTCAGATTTGGGTTGTGGAAGACGGAACAGTGTCTT  Raphanus sativus cv Early Scarlet Globe

               1101   -   1151
UN13039        --> TCTTCGATGGCACGTTTGAAGAGTACAAGGAAGATCTGCAAAGAGAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- TCTTCGATGGCACGTTTGAAGAGTACAAGGAAGATCTGCAAAGAGAGATC
EX776947       <-- TTTTCGATGGCACGTTTTAAGAGTACAAGGAAGATCTGCAAAGAGAGATC
EY920066       <-- TCTTCGATGGCACGTTTGAAGAGTACAAGGAAGATCTGCAAAGAGAGATC
EX769198       <-- TCTTCGATGGCACGTTTGAAGAGTACAAGGAAGATCTGCAAAGAGAGATC
EY920199       <-- TCTTCGATGGCACGTTTGAAGAGTACAAGGAAGATCTGCAAAGAGAGATC
FD571425       --> ..................................................
EY938084       --> ..................................................
EY924412       --> ..................................................
EY924570       --> TCTTCGATGGCACGTTTGA-GAGTACAAG-AAGATCTGCAA-GAGAGATC
EY899376       --> ..................................................
EX895548       --> TCTTCGATGGCACGTTTGAAGAGTACAAGGAAGATCTCCAAAGA......
EX765410       --> TCTTCGATGGCACGTTTGAAGAGTACAAGGAAGATCTGCAAAGAGAGATC
FD947312       --> TCTTCGATGGCACGTTTGAAGAGTACAAGGAAGATCTGCAAAGAGAGATC

               1151   -   1201
UN13039        --> AGAGCAGAGGTCGATGAGTTGATC-G-TTGTGTTGT--TGTTGGCTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- AGAGCGGAGGTCGATGAGT-GATG-TCTTGTGTTGTGTTGTTGGCTTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776947       <-- AGAGCAGAGGTCGATGAGT-GATGTC-TTGTGTTGT--TGTTGGCTTTTA  Raphanus raphanistrum subsp. landra
EY920066       <-- AGAGCAGAGGTCGATGAGT-GATGTC-TTGTGTTGT--TGTTGGCTTTTA  Raphanus raphanistrum subsp. landra
EX769198       <-- AGGGCAGAGGTCGATGAGTTG-TC---TTGTGTTGTGTTGTTGGCTTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920199       <-- AGAGCAGAGGTCGATGAGT-GATGTC-TTGTGTTGT--TGTTGGCTTTTA  Raphanus raphanistrum subsp. landra
FD571425       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938084       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY924412       --> ..................................................  Raphanus raphanistrum subsp. landra
EY924570       --> AGAGCAGAGGTCGATGAGTgat............................  Raphanus raphanistrum subsp. landra
EY899376       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX895548       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX765410       --> AGGGCAGAGGTCGATGAGTTG-TC---TTGTGTTGTGTTGTTGGCTTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947312       --> AGAGCAGAGGTCGATGAGT-GATGTC-TTGTGTTGT--TGTTGGCTTTTA  Raphanus sativus cv Early Scarlet Globe

               1201   -   1251
UN13039        --> AAGGTAAAACTGAAAGCTCTTTATATTCTCAGACTTGGAAAAAGTTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- AAGGTAAAACTGAAAGCTCTTTATATTCTCAGACTTGGAAAAAGTTTTGG
EX776947       <-- AAGGTAAAACTGAAAGCTCTTTATATTTTCAGACTTGGAAAAAGTTTTGG
EY920066       <-- AAGGTAAGACTGAAAGCTCTTTATATTCTCAGACTTGGAAAAAGTTTTGG
EX769198       <-- AAGGTAAAACTGAAAGCTCTTTATATTCTCAGACTTGGAAAAAGTTTTGG
EY920199       <-- AAGGTAAGACTGAAAGCTCTTTATATTCTCAGACTTGGAAAAAGTTTTGG
FD571425       --> ..................................................
EY938084       --> ..................................................
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> AAGGTAAAACTGAAAGCTCTTTATATTCTCAGACTTGGAAAAAGTTTTGG
FD947312       --> AAGGTAAAACTGAAAGCTCTTTATATTCTCAGACTTGGAAAAAGTTTTGG

               1251   -   1301
UN13039        --> ACTAAAGTTTATTTTATAGACATTGTGTGTGTTTTCTTCGTCATATATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ACTAAAGTTTATTTTATAGACATTGTGTGTGTTTTCTTCATCATATATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776947       <-- ACTAAAGTTTATTTTATAGACATTGTGTGTGTTTTTTTCGTCATATATAC  Raphanus raphanistrum subsp. landra
EY920066       <-- ACTAAAGTTTATTTTATAGACATTGTGTGTGTTTCCTTCGTCATATATAC  Raphanus raphanistrum subsp. landra
EX769198       <-- ACTGAAGTTTATTTTATAGACATTGTGTGTGTTTTCTTCATCATATATAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920199       <-- ACTAAAGTTTATTTTATAGACATTGTGTGTGTTTCCTTCGTCATATATAC  Raphanus raphanistrum subsp. landra
FD571425       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938084       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY924412       --> ..................................................  Raphanus raphanistrum subsp. landra
EY924570       --> ..................................................  Raphanus raphanistrum subsp. landra
EY899376       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX895548       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX765410       --> ACTGAAGTTTATTTTATAGACATTGTGTGTGTTTTCTTCATCATATATAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947312       --> ACAAAAGTTTATTTTATAGACATTGTGTGTGTTTTCTTCGTCATATATAC  Raphanus sativus cv Early Scarlet Globe

               1301   -   1351
UN13039        --> GTTAATGGCATGAAACCATATACGTTTTCCCCATGTTACATAGTCGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- GTTAATGGCATGAAACC.................................
EX776947       <-- GTTAATGGCATGAAACCATATACGTTTTCCCCATGTTACATAGTCGAGTG
EY920066       <-- GTTAATGGCATGAAACCATATACGTTTTCCCCATGTTACATAGTCGAGTG
EX769198       <-- GTTAATGACATGAAACCATATACGTTTTCCCCATGTTACATAGTCGAGTG
EY920199       <-- GTTAATGGCATGAAACCATATACGTTTTCCCCATGTTACATAGTCGAGTG
FD571425       --> ..................................................
EY938084       --> ..................................................
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> GTTAATGACATGAAACCATATACGTTTTCCCCATGTTACATAGTCGAGTG
FD947312       --> GTTAATGGCATGAAACCATATACGTTTTCCCCATGTTACATAGTCGAGTG

               1351   -   1401
UN13039        --> TAGTATTATGTTTTGTGGGAAGCAAGGATATGTCTTTCATTTTTTATTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ..................................................
EX776947       <-- TAGTATTATGTTTTGTGGGAAGCAAGGATATGTCTTTCATTTTTTATTTC
EY920066       <-- TAGTATTATGTTTTGTGGGAAGCAAGGATATGTCTTTCATTTTTTATTTC
EX769198       <-- TAGTATTATGTTTTGGGGGAAGCAAGGATATGTCTTTCATTTTTTATTTC
EY920199       <-- TAGTATTATGTTTTGTGGGAAGCAAGGATATGTCTTTCATTTTTTATTTC
FD571425       --> ..................................................
EY938084       --> ..................................................
EY924412       --> ..................................................
EY924570       --> ..................................................
EY899376       --> ..................................................
EX895548       --> ..................................................
EX765410       --> TAGTATTATGTTTTGGGGGAAG............................
FD947312       --> TAGTATTATGTTTTGTGGGAAGCAAGGATATGTCTTTCATTTTTTATTTC

               1401   -   1451
UN13039        --> ATGAATGTGTGTTTCATTGAGCATAATAAACAACAATTCTCT.
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540227       <-- ...........................................
EX776947       <-- ATGAATGTGTGTTTCATTGAGCATAATAAACAACAATTCTCT.
EY920066       <-- ATGAATGTGTGTTTCATTGAGCATAATAAGCAACAATTCTCTt
EX769198       <-- ATGAATGTGTGTTCCATTGAGCATAATAAACAACAATTCTCTt
EY920199       <-- ATGAATGTGTGTTTCATTGAGCATAATAAGCAACAATTCTCTt
FD571425       --> ...........................................
EY938084       --> ...........................................
EY924412       --> ...........................................
EY924570       --> ...........................................
EY899376       --> ...........................................
EX895548       --> ...........................................
EX765410       --> ...........................................
FD947312       --> ATGAATGTGTGTTTCATTGAGCATAATAAACAACAATTCTC..