RadishBase

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Alignment for radish unigene UN13041

               1      -     51
UN13041        --> GGATCCGTGTCCAGTGGTGTCTGTCCTAGGTGTCTGTGTATCTGCTTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- ..................................................
EX760367       <-- ..................................................
FD552394       <-- ..................................................
FD539368       <-- ..................................................
FD555748       <-- ..................................................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> GGATCCGTGTCCAGTGGTGTCTGTCCTAGGTGTCTGTGTATCTGCTTCAT
EX758121       --> GGATCCGTGTCCAGTGGTGTCTGTCCTAGGTGTCTGTGTATCTGCTTCAT
EY905182       --> GGATCCGTGTCCAGTGGTGTCTGTCCTAGGTGTCTGTGTATCTGCTTCAT
EY908463       --> GGATCCGTGTCCAGTGGTGTCTGTCCTAGGTGTCAGTGTATCTGCTTCAT
FD543569       --> GGATCCGTGTCCAGTGGTGTCTGTCCTAGGTGTCTGTGTATCTGCTTCAT
EV537430       --> .GATCCGTGTCCAGTGGTGTCTGTCCTAGGTGTCTGTGTATCTGCTTCAT
EV567542       --> .............ggatccgtgtccagtGGTGTCTGTGTGTCTGCTTCAT

               51     -    101
UN13041        --> CTTCGATCAGAAAAAAATGGCAGAGAAGGCAGAGTTGTTGGAATGGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- ..................................................
EX760367       <-- ..................................................
FD552394       <-- ..................................................
FD539368       <-- ..................................................
FD555748       <-- ..................................................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> CTTCGATCAGAAAAAAATGGCAGAGAAGGCAGAGTTGTTGGAATGGCCAA
EX758121       --> CTTCGATCAGAAAAAAATGGCAGAGAAGGCAGAGTTGTTGGAATGGCCAA
EY905182       --> CTTCGATCAGAAAAAAATGGCAGAGAAGGCAGAGTTGTTGGAATGGCCAA
EY908463       --> CTTCGATCAGAAAAAAATGGCAGAGAAGGCAGAGTTGTTGGAATGGCCAA
FD543569       --> CTTCGATCAGAAAAAAATGGCAGAGAAGGCAGAGTTGTTGGAATGGCCAA
EV537430       --> CTTCGATCAGAAAAAAATGGCAGAGAAGGCAGAGTTGTTGGAATGGCCAA
EV567542       --> CTTGGATCAGAAAAAAATGGCAGAGAAGGCAGAGTTGTTGGAGTGGCCAA

               101    -    151
UN13041        --> AGAAGGATAAGCGTCGTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- ..................................................
EX760367       <-- ..................................................
FD552394       <-- ..................................................
FD539368       <-- ..................................................
FD555748       <-- ..................................................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> AGAAGGATAAGCGTCGTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTT
EX758121       --> AGAAGGATAAGCGTCGTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTT
EY905182       --> AGAAGGATAAGCGTCGTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTT
EY908463       --> AGAAGGATAAGCGTCGTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTT
FD543569       --> AGAAGGATAAGCGTCGTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTT
EV537430       --> AGAAGGATAAGCGTCGTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTT
EV567542       --> AGAAGGATAAGCGTCGTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTT

               151    -    201
UN13041        --> GATCGCACTATCCAGTTTTACACTGAGTGCTTTGGGATGAAGGTGTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- ..................................................
EX760367       <-- ..................................................
FD552394       <-- ..................................................
FD539368       <-- ..................................................
FD555748       <-- ..................................................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> GATCGCACTATCCAGTTTTACACTGAGTGCTTTGGGATGAAGGTGTTGAG
EX758121       --> GATCGCACTATCCAGTTTTACACTGAGTGCTTCGGCATGAAGGTGTTGAG
EY905182       --> GATCGCACTATCCAGTTTTACACTGAGTGCTTTGGGATGAAGGTGTTGAG
EY908463       --> GATCGCACTATCCAGTTTTACACTGAGTGtttg.................
FD543569       --> GATCGCACTATCCAGTTTTACACTGAGTGCTTTGGGATGAAGGTGTTGAG
EV537430       --> GATCGCACTATCCAGTTTTACACTGAGTGCTTTGGGATGAAGGTGTTGAG
EV567542       --> GATCGCACTATCCAGTTTTACACTGAGTGCTTTGGGATGAAGGTGTTGAG

               201    -    251
UN13041        --> GAAAAGAGATGTCCCTGAGGAGAAGTATTCTAATGCTTTCCTTGGTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- ..................................................
EX760367       <-- ..................................................
FD552394       <-- ..................................................
FD539368       <-- ..................................................
FD555748       <-- ..................................................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> GAAAAGGGATGTCCCTGAGGAGAAGTATTCTAATGCTTTCCTTGGTTTTG
EX758121       --> GAAAAGAGATGTCCCTGAGGAGAAGTATTCTAATGCTTTCCTTGGTTTTG
EY905182       --> GAAAAGAGATGTCCCTGAGGAGAAGTATTCTAATGCTTTCCTTGGTTTTG
EY908463       --> ..................................................
FD543569       --> GAAAAGAGATGTCCCTGAGGAGAAGTATTCTAATGCTTTCCTTGGTTTTG
EV537430       --> GAAAAGAGATGTCCCTGAGGAGAAGTATTCTAATGCTTTCCTTGGTTTTG
EV567542       --> GAAAAGAGATGTCCCTGACGAGAAGTATTCTAATGCTTTCCTTGGTTTTG

               251    -    301
UN13041        --> GTCCTGAGACCTCCAACTTCGTCGTCGAGCTCACATACAATTATGGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- ..................................................
EX760367       <-- ..................................................
FD552394       <-- ..................................................
FD539368       <-- ..................................................
FD555748       <-- ..................................................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> GTCCTGAGACCTCCAACTTCGTCGTCGAGCTCACATACAATTATGGTGTT
EX758121       --> GTCCTGAGACCTCCAACTTCGTCGTCGAGCTCACATACAATTATGGTGTT
EY905182       --> GTCCTGAGACCTCCAACTTCGTCGTCGAGCTCACATACAATTATGGTGTT
EY908463       --> ..................................................
FD543569       --> GTCCTGAGACCTCCAACTTCGTCGTCGAGCTCACATACAATTATGGTGTT
EV537430       --> GTCCTGAGACCTCCAACTTCGTCGTCGAGCTCACATACAATTATGGTGTT
EV567542       --> GTCCTGAGACATCCAACTTTGTCGTCGAGCTCACATACAATTATGGTGTT

               301    -    351
UN13041        --> AGCTCCTATGAAATTGGGACTGGATTTGGGCATTTCGCTATTTCCACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- .........GAAATTGGGACTGGATTTGGGCATTTCGCTATTTCCACTCA
EX760367       <-- ...............................................TCA
FD552394       <-- ..................................................
FD539368       <-- ..................................................
FD555748       <-- ..................................................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> AGCTCCTATGAAATTGGGACTGGATTTGGGCATTTCGCTATTTCCACTCA
EX758121       --> AGCTCGTATGACATTGGGACTGGATTTGGGCATTTCGCCATTTCCACTCA
EY905182       --> AGCTCCTATGAAATTGGGACTGGATTTGGGCATTTCGCTATTTCCACTCA
EY908463       --> ..................................................
FD543569       --> AGCTCCTATGAAATTGGGACTGGATTTGGGCATTTCGCTATTTCCACTCA
EV537430       --> AGCTCCTATGAAATTGGGACTGGATTTGGGCATTTCGCTATTTCCACTCA
EV567542       --> AGCTCCTATGACATTGGGACTGGATTTGGGCATTTCGCTATTTCCACTCA

               351    -    401
UN13041        --> AGATGTTGCCAAGATGGTTGAGACTGTCCGTGCCAAGGGTGGAAATGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- AGATGTTGCCAAGATGGTTGAGACTGTCCGTGCCAAGGGTGGAAATGTCA
EX760367       <-- AGATGT-GCCAAGATGGTTGAGACTGTCCGTGCCAAGGGTGGAAATGTCA
FD552394       <-- ..................................................
FD539368       <-- ..................................................
FD555748       <-- ..................................................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> AGATGTTGCCAAGATGGTTGAGACTGTCCGTGCCAAGGGTGGAAATGTCA
EX758121       --> AGATGTTGCCAAGATGGTTGAGACTGTCCGTGCCAAGGGTGGAAATGTCA
EY905182       --> AGATGTTGCCAAGATGGTTGAGACTGTCCGTGCCAAGGGTGGAAATGTCA
EY908463       --> ..................................................
FD543569       --> AGATGTTGCCAAGATGGTTGAGACTGTCCGTGCCAAGGGTGGAAATGTCA
EV537430       --> AGATGTTGCCAAGATGGTTGAGACTGTCCGTGCCAAGGGTGGAAATGTCA
EV567542       --> AGATGTTGCCAAGATGGTTGAGACTGTCCGTGCCAAGGGTGGAAATGTCA

               401    -    451
UN13041        --> CCAGAGAGCCAGGTCCTGTCAAAGGTGGAAACAGTGTCATTGCCTTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- CCAGAGAGCCAGGTCCTGTCAAAGGTGGAAACAGTGTCATTGCCTTTGTG
EX760367       <-- CCAGAGAGCCAGGTCCTGTCAAAGGTGGAAACAGTGTCATTGCCTTTGTG
FD552394       <-- ..................................................
FD539368       <-- ..................................................
FD555748       <-- ..................................................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> CCAGAGAGCCAGGTCCTGTCAAAGGTGGAAACAGTGTCATTGCCTTTGTG
EX758121       --> CCAGAGAGCCAGGTCCAGTCAAAGGTGGAAACAGTGTCATTGCCTTTGTG
EY905182       --> CCAGAGAGCCAGGTCCTGTCAAAGGTGGAAACAGTGTCATTGCCTTTGTG
EY908463       --> ..................................................
FD543569       --> CCAGAGAGCCAGGTCCTGTCAAAGGTGGAAACAGTGTCATTGCCTTTGTG
EV537430       --> CCAGAGAGCCAGGTCCTGTCAAAGGTGGAAACAGTGTCATTGCCTTTGTG
EV567542       --> CCAGAGAGCCTGGTCCGGTCAAAGGTGGAAACAGTGTCATTGCCTTTGTG

               451    -    501
UN13041        --> AAGGACCCTGATGGTTACACTTTTGAGCTCATCCAGAGAGGTCCTACTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- AAGGACCCTGATGGTTACACTTTTGAGCTCATCCAGAGAGGTCCTACTCC
EX760367       <-- AAGGACCCTGATGGTTACACTTTTGAGCTCATCCAGAGGGGTCCTACTCC
FD552394       <-- ...........TGGTTACACTTT-GAGCTCATCCAGAGAGGTCCTACTCC
FD539368       <-- ..................................................
FD555748       <-- ..................................................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> AAGGACCCTGATGGTTACACTTTTGAGCTCATCCAGAGGGGTCCTACTCC
EX758121       --> AAGGACCCTGATGGTTACACTTTTGAGCTCGTCCAGAGAGGTCCTACTCC
EY905182       --> AAGGACCCTGATGGTTACACTTTTGAGCTCATCCAGAGAGGTCCTACTCC
EY908463       --> ..................................................
FD543569       --> AAGGACCCTGATGGTTACACTTTTGAGCTCATCCAGAGAGGTCCTACTCC
EV537430       --> AAGGACCCTGATGGTTACACTTTTGAGCTCATCCAGAGAGGTCCTACTCC
EV567542       --> AAGGACCCTGATGGTTACACTTTTGAGCTCATCCAGAGAGGTCCTACTCC

               501    -    551
UN13041        --> TGAACCACTCTGTCAAGTCATGCTTCGCGTTGGTGATCTTGACCGCGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- TGAACCACTCTGTCAAGTCATGCTTCGCGTTGGTGATCTTGACCGCGCCA
EX760367       <-- TGAAC-ACTCTGTCAAGTCATGCTTCGCGTTGGTGATCTTGACCGCGCCA
FD552394       <-- TGAACCACTCTGTCAAGTCATGCTTCGTGTTGGTGATCTTGACCGCGCCA
FD539368       <-- ...ACCACTCTGTCAAGTCATGCTTCGCGTTGGTGATCTTGACCGCGCCA
FD555748       <-- ...ACCACTCTGCCAAGTCATGCTTCGTGTTGGTGATCTTGACCGTGCCA
EV572464       <-- ...........................................CGCGCCA
FD539369       <-- ...........................................CGCGCCA
EX756588       --> TGAAC-ACTCTGTCAAGTCATGCTTCGCGTTGGTGATCTTGACCGCGCCA
EX758121       --> TGAACCACTCTGTCAAGTCATGCTTCGTGTTGGTGATCTTGACCGCGCCA
EY905182       --> TGAACCACTCTGTCAAGTCATGCTTCGCGTTGGTGATCTTGACCGCGCCA
EY908463       --> ..................................................
FD543569       --> TGAACCACTCTGTCAAGTCATGCTTCGCGTTGGTGATCTTGACCGCGCCA
EV537430       --> TGAACCACTCTGTCAAGTCATGCTTCGCGTTGGTGATCTTGACCGCGCCA
EV567542       --> TGAACCACTCTGTCAAGTCATGCTTCGTGTTGGCGATCTTGACCGCGCCA

               551    -    601
UN13041        --> TCAAGTTCTATGAGAAGGTCCTAGGGATGAGACTCTTGAGAAGGATTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- TCAAGTTCTATGAGAAGGTCCTAGGGATGAGACTCTTGAGAAGGATTGAG
EX760367       <-- TCAAGTTCTATGAGAAGGTCCTAGGGATGAGACTCTCGAGAAGGATTGAG
FD552394       <-- TCAAGTTCTATGAGAAGGCCCTAGGGATGAGACTCTTGAGAAGGATTGAG
FD539368       <-- TCAAGTTCTATGAGAAGGTCCTAGGGATGAGACTCTTGAGAAGGATTGAG
FD555748       <-- TCCAGTTCTATGAGAAGGCCTTAGGGATGAGACTCTTGAGAAGGATTGAG
EV572464       <-- TCAAGTTCTATGAGAAGGCCCTAGGGATGAGACTCTTGAGAAGGATTGAG
FD539369       <-- TCAAGTTCTATGAGAAGGTCCTAGGGATGAGACTCTTGAGAAGGATTGAG
EX756588       --> TCAAGTTCTATGAGAAGGTCCTAGGGATGAGACTCTCGAGAAGGATTGAG
EX758121       --> TCAAGTTCTATGAAAAGGCCCTGGGGATGAGACTCTTGAGAAGGATCGAG
EY905182       --> TCAAGTTCTATGAGAAGGTCCTAGGGATGAGACTCTTGAGAAGGATTGAG
EY908463       --> ..................................................
FD543569       --> TCAAGTTCTATGAGAAGGTCCTAGGGATGAGACTCTTGAGAAGGATTGAG
EV537430       --> TCAAGTTCTATGAGAAGGTCCTAGGGATGAGACTCTTGAGAAGGATTGAG
EV567542       --> TCAAGTTCTATGAGAAGGCCCTAGGGATGAGACTCTTGAGAAGGATTGAG

               601    -    651
UN13041        --> AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA
EX760367       <-- AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA
FD552394       <-- AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA
FD539368       <-- AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA
FD555748       <-- AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA
EV572464       <-- AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA
FD539369       <-- AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA
EX756588       --> AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA
EX758121       --> AGACCTGAATACAAGTACACC.............................
EY905182       --> AGACCTGAATACAAGTACACC.............................
EY908463       --> ..................................................
FD543569       --> AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA
EV537430       --> AGACCTGAATACAAGTACACC.............................
EV567542       --> AGACCTGAATACAAGTACACCATAGGCATGATGGGATATGCTGAGGAACA

               651    -    701
UN13041        --> TGAGTCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- TGAGTCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTACA
EX760367       <-- TGAGTCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTACA
FD552394       <-- TGAGTCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTACA
FD539368       <-- TGAGTCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTACA
FD555748       <-- TGAGTCGATAGTTTTGGAGCTGACCTATAACTACGGTGTGACTGAGTACA
EV572464       <-- TGAGTCGATAGTTTTGGAGCTGACCTATAATTACGGCGTGACTGAGTACA
FD539369       <-- TGAGTCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTACA
EX756588       --> TGAGTCGATAGTTTTGGAGCTGACCTATAACT..................
EX758121       --> ..................................................
EY905182       --> ..................................................
EY908463       --> ..................................................
FD543569       --> TGAGTCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTAC.
EV537430       --> ..................................................
EV567542       --> TGAGTCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTACA

               701    -    751
UN13041        --> CAAAGGGCAATGCATATGCACAGATCGCAATAGGCACGGATGATGTGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- CAAAGGGCAACGCATATGCACAGATCGCAATAGGCACGGATGATGTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760367       <-- CAAAGGGCAACGCATATGCACAGATCGCAATAGGCACGGATGATGTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD552394       <-- CAAAGGGCAATGCATATGCACAGATCGCAATAGGCACGGATGATGTGTAC  Raphanus raphanistrum subsp. landra
FD539368       <-- CAAAGGGCAACGCATATGCACAGATCGCAATAGGCACGGATGATGTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555748       <-- CAAAGGGCAATGCGTATGCACAGATTGCAATAGGCACGGATGATGTGTAC  Raphanus raphanistrum subsp. landra
EV572464       <-- CAAAGGGCAATGCATATGTACAGATCGCAATAGGCACGGATGATGTGTAC  Raphanus raphanistrum subsp. landra
FD539369       <-- CAAAGGGCAACGCATATGCACAGATCGCAATAGGCACGGATGATGTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756588       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758121       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905182       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908463       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543569       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537430       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567542       --> CAAAGGGCAATGCATATGTACAGATCGCAA....................  Raphanus raphanistrum subsp. landra

               751    -    801
UN13041        --> AAAAGCGGTGAAGTTGTGAAGATAATGAACCAAGAGCTAGGAGGAAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- AAAAGCGGTGAAGTTGTGAAGATAATGAACCAAGAGCTAGGAGGAAAGAT
EX760367       <-- AAAAGCGGTGAAGTTGTGAAGATAATGAACCAAGAGCTAGGAGGAAAGAT
FD552394       <-- AAAAGCGGTGAAGTTGTGAAGATAATGAACCAAGAGCTAGGAGGAAAGAT
FD539368       <-- AAAAGCGGTGAAGTTGTGAAGATAATGAACCAAGAGCTAGGAGGAAAGAT
FD555748       <-- AAAAGCGGTGAAGTTGTGAAGATAATGAACCAAGAGCTAGGAGGAAAGAT
EV572464       <-- AAAAGCGGTGAAGTTGTGAAGATAATGAACCAAGAGCTAGGAGGAAAGAT
FD539369       <-- AAAAGCGGTGAAGTTGTGAAGATAATGAACCAAGAGCTAGGAGGAAAGAT
EX756588       --> ..................................................
EX758121       --> ..................................................
EY905182       --> ..................................................
EY908463       --> ..................................................
FD543569       --> ..................................................
EV537430       --> ..................................................
EV567542       --> ..................................................

               801    -    851
UN13041        --> CACTAGAGAAGCCGGACCTCTTCCTGGACTAGGCACCAAGATTGTCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- CACTAGAGAAGCCGGACCTCTTCCTGGACTAGGCACCAAGATTGTCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760367       <-- CACTAGAGAAGCCGGACCTCTTCCTGGACTAGGCACCAAGATTGTCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD552394       <-- CACTAGAGAAGCCGGACCTCTTCCTGGACTCGGCACCAAGATTGTCTCGT  Raphanus raphanistrum subsp. landra
FD539368       <-- CACTAGAGAAGCCGGACCTCTTCCTGGACTAGGCACCAAGATTTTCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555748       <-- CACTAGAGAAGCCGGACCTCTTCCTGGACTCGGCACCAAGATTGTCTCGT  Raphanus raphanistrum subsp. landra
EV572464       <-- CACTAGAGAAGCCGGACCTCTTCCTGGACTCGGCACCAAGATTGTCTCGT  Raphanus raphanistrum subsp. landra
FD539369       <-- CACTAGAGAAGCCGGACCTCTTCCTGGACTAGGCACCAAGATTTTCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756588       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758121       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905182       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908463       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543569       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537430       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567542       --> ..................................................  Raphanus raphanistrum subsp. landra

               851    -    901
UN13041        --> TCCTCGATCCTGATGGCTGGAAAACAGTTCTGGTAGACAACGAAGATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- TCCTCGATCCTGATGGCTGGAAAACAGTTTTGGTAGACAACGAAGATTTT
EX760367       <-- TCCTCGATCCTGATGGCTGGAAAACAGTTCTGGTAGACAACGAAGATTTT
FD552394       <-- TCCTCGATCCTGATGGCCGGAAAACAGTTCTGGTAGACAACGAAGATTTT
FD539368       <-- TCCTCGATCCTGATGGCTGGAAAACAGTTCTGGTAGACAACGAAGATTTT
FD555748       <-- TCCTCGATCCTGATGGCTGGAAAACAGTTCTGGTAGACAACGAAGATTTT
EV572464       <-- TCCTCGATCCTGATGGCTGGAAAACAGTTCTGGTAGACAACGAAGATTTT
FD539369       <-- TCCTCGATCCTGATGGCTGGAAAACAGTTCTGGTAGACAACGAAGATTTT
EX756588       --> ..................................................
EX758121       --> ..................................................
EY905182       --> ..................................................
EY908463       --> ..................................................
FD543569       --> ..................................................
EV537430       --> ..................................................
EV567542       --> ..................................................

               901    -    951
UN13041        --> CTGAAGGAACTGGAATGAGG--AGAGAGAGAG--A----TGATGATGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- TTGAAGGAACTGGAATGAGG--AGAGAGAGAG--AGGGATGCTGATGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760367       <-- CTGAAGGAACTGGAATGAGG--AGAGAGAGAGGGA----TGCTGATGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD552394       <-- TTGAAGGAACTGGAATGAGG--AGAGAG-G-G--A----TGATGATGGTC  Raphanus raphanistrum subsp. landra
FD539368       <-- CTGAAGGAACTGGAATGAGGTGAGAGAGAGAGGGA----TGCTGATGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555748       <-- CTGAAGGAACTGGAATGAGG--AGAGAG-G-G--A----TGATGATGGTC  Raphanus raphanistrum subsp. landra
EV572464       <-- CTGAAGGAACTGGAATGAGG--AGAGAG-G-G--A----TGATTATGGTC  Raphanus raphanistrum subsp. landra
FD539369       <-- CTGAAGGAACTGGAATGAGGTGAGAGAGAGAGGGA----TGCTGATGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756588       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758121       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905182       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908463       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543569       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537430       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567542       --> ..................................................  Raphanus raphanistrum subsp. landra

               951    -   1001
UN13041        --> AAGAATAGATCACAGCTAAAACGTAACCATAATAATAAAATATGTGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- AAGAATAGATCACAGCTAAAACGTAACCATAATAATAAAATATGTGATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760367       <-- AAGAATAGATCACAGCTAAAACGTAACCATAATAATAAAATATGTGATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD552394       <-- ACGAATAGATCACAGCTAAAACGTAACCATAATAATAAAATATGTGATCT  Raphanus raphanistrum subsp. landra
FD539368       <-- AAGAATAGATCACAGCTAAAACGTAACCATAATAATAAAATATGTGATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555748       <-- ACGAATAGATCACAGCTAAAACGTAACCATAATAATAAAATATGTGATCT  Raphanus raphanistrum subsp. landra
EV572464       <-- ACGAATAGATCACGGCTAAAACGTAACCATAATAATAAAATATGTGATCT  Raphanus raphanistrum subsp. landra
FD539369       <-- AAGAATAGATCACAGCTAAAACGTAACCATAATAATAAAATATGTGATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756588       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758121       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905182       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908463       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543569       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537430       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567542       --> ..................................................  Raphanus raphanistrum subsp. landra

               1001   -   1051
UN13041        --> TATCAAAGTAGAGAGAAGACTTAGTATTTGATCTACTAAATAAGATGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- TATCAAAGTAGAGAGAAGACTTAGTATTTGATCTACTAAATAAGATGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760367       <-- TATCAAAGTAGAGAGAAGACTTAGTATTTGATCTACTAAATAAGATGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD552394       <-- TATCAA-GTAGAGGGAAGACTTAGTATTTGATCTACTAAATAAGATGTTT  Raphanus raphanistrum subsp. landra
FD539368       <-- TATCAAAGTAGAGAGAAGACTTAGTATTTGATCTACTAAATAAGATGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555748       <-- TATCAA-GTAGAGGGAAGACTTAGTATTTGATCTACTAAATAAGATGTTT  Raphanus raphanistrum subsp. landra
EV572464       <-- TATCAA-GTAGAGGGAAGACTTAGTATTTGATCTACTAAATAAGATGTTT  Raphanus raphanistrum subsp. landra
FD539369       <-- TATCAAAGTAGAGAGAAGACTTAGTATTTGATCTACTAAATAAGATGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756588       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758121       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905182       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908463       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543569       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537430       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567542       --> ..................................................  Raphanus raphanistrum subsp. landra

               1051   -   1101
UN13041        --> GTTCAGTTTGTGTGTCGTCTGCTAAAACTCTGTTACGTTCCTGAATAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- GTTCAGTTTGTGTGTCGTCTGCTAAAACTCTGTTACGTTCCTGAATAAAA
EX760367       <-- GTTCAGTTTGTGTGTCGTCTGCTAAAACTCTGTTACGTTCCTGAATAAAA
FD552394       <-- GTTCAGTTTGTGTGTCGTCTGCTAAAACTCTGTTACGTTCCTGAATAAAA
FD539368       <-- GTTCAGTTTGTGTGTCGTCTGCTAAAACTCTGTTACGTTCCTGAATAAAA
FD555748       <-- GTTCAGTTTGTGTGTCGTCTGCTAAAACTCTGTTACGTTCCTGAATAAAA
EV572464       <-- GTTCAGTTTGTGTGTCGTCTGCTAAAACTCTGTTACGTTCCTGA......
FD539369       <-- GTTCAGTTTGTGTGTCGTCTGCTAAAA.......................
EX756588       --> ..................................................
EX758121       --> ..................................................
EY905182       --> ..................................................
EY908463       --> ..................................................
FD543569       --> ..................................................
EV537430       --> ..................................................
EV567542       --> ..................................................

               1101   -   1151
UN13041        --> ATATATCCACCATCTGGTTTTGGTGTTTACCGGTTATGAATGGTTTAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541659       <-- ATATATCCCCCACCTGGTTTTGGTG.........................
EX760367       <-- ATATATCCACCACCTGGTTTTGGTGTTTACCGGc................
FD552394       <-- ATATATCAACCATCTGGTTTTGGTGTTTACCGGTTATGAATGGTTTAGTA
FD539368       <-- ATATATCCACCAcc....................................
FD555748       <-- ATATATCAACCATCTGGTTTTGGTGTT.......................
EV572464       <-- ..................................................
FD539369       <-- ..................................................
EX756588       --> ..................................................
EX758121       --> ..................................................
EY905182       --> ..................................................
EY908463       --> ..................................................
FD543569       --> ..................................................
EV537430       --> ..................................................
EV567542       --> ..................................................

               1151   -   1201
UN13041        --> GAATAC
                   ~~~~~~
EV541659       <-- ......
EX760367       <-- ......
FD552394       <-- GAATAC
FD539368       <-- ......
FD555748       <-- ......
EV572464       <-- ......
FD539369       <-- ......
EX756588       --> ......
EX758121       --> ......
EY905182       --> ......
EY908463       --> ......
FD543569       --> ......
EV537430       --> ......
EV567542       --> ......