RadishBase

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Alignment for radish unigene UN13054

               1      -     51
UN13054        --> GGAAGCTCTCGTTACAGTCACCCTTCATCTCTCTCGAAAGCTTCATTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- ..................................................
EX753389       <-- ..................................................
EY934006       <-- ..................................................
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> GGAAGCTCTCGTTACAGTCACCCTTCATCTCTCTCGAAAGCTTCATTCCC
EY939843       --> ....GCTCTCGTTACAGTCACCCTTCATCTCTCTCGAAAGCTTCATTCCC
EV568006       --> ........................ggATCTCTCTCGAAAGCTTCATTCCT
EY901277       --> ........................ggATCTCTCTCGAAAGCTTCATTCCT
EY940865       --> .......................gggATCTCTCTCGAAAGCTTCGTTCCC
FD570243       --> ........................ggATCTCTCTCGAAAGCTTCATTCCC
EX894775       --> ..................................................
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> ..................................................
FD987938       --> ..................................................

               51     -    101
UN13054        --> ATCAAAAGA----TGGAGATCACAAACGTAACCGAGTATGAAGCCATCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- ..................................................
EX753389       <-- ..................................................
EY934006       <-- ..................................................
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> ATCAAAAGA----TGGAGATCACAAACGTAACCGAGTATGAAGCCATCGC
EY939843       --> ATCAAAAGA----TGGAGATCACAAACGTAACCGAGTATGAAGCCATCGC
EV568006       --> ATCAAAAGA----TGGAGATCACAAACGTTACCGAGTATGAAGCCATCGC
EY901277       --> ATCAAAAGACAGATGGAGATCACAAACGTTACCGAGTATGAAGCCATCGC
EY940865       --> ATCAAAAGA----TGGAGATCACAAACGTAACCGAGTATGAAGCCATCGC
FD570243       --> ATCAAAAGA----TGGAGATCACAAACGTAACCGAGTATGAAGCCATCGC
EX894775       --> ..........................gGTAACCGAGTATGAAGCCATCGC
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> ..................................................
FD987938       --> ..................................................

               101    -    151
UN13054        --> AAAGGAGAAGCTGCCTAAGATGGTATACGACTACTATGCCTCTGGTGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- ..................................................
EX753389       <-- ..................................................
EY934006       <-- ..................................................
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> AAAGGAGAAGCTGCCTAAGATGGTATACGACTACTATGCCTCTGGTGCAG
EY939843       --> AAAGGAGAAGCTGCCTAAGATGGTATACGACTACTATGCCTCTGGCGCAG
EV568006       --> AAAGGAGAAGCTGCCTAAGATGGTATACGACTACTATGCCTCTGGTGCAG
EY901277       --> AAAGGAGAAGCTGCCTAAGATGGTATACGACTACTATGCCTCTGGTGCAG
EY940865       --> AAAGGAGAAGCTGCCTAAGATGGTATACGACTACTATGCCTCTGGTGCAG
FD570243       --> AAAGGAGAAGCTGCCTAAGATGGTATACGACTACTATGCCTCTGGTGCAG
EX894775       --> AAAGGAGAAGCTGCCTAAGATGGTATACGACTACTATGCCTCTGGTGCAG
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> ..................................................
FD987938       --> ..................................................

               151    -    201
UN13054        --> AAGACCAATGGACTCTTAAAGAGAACAGGAATGCTTTCGCAAGGATCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- ..................................................
EX753389       <-- ..................................................
EY934006       <-- ..................................................
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> AAGACCAATGGACTCTTAAAGAGAACAGGAATGCTTTCGCAAGGATCCTC
EY939843       --> AAGACCAATGGACTCTTAAAGAGAACAGGAATGCTTTCGCAAGGATCCTC
EV568006       --> AAGACCAATGGACTCTTAAAGAGAACAGGAATGCTTTCGCAAGGATCCTC
EY901277       --> AAGACCAATGGACTCTTAAAGAGAACAGGAATGCTTTCGCAAGGATCCTC
EY940865       --> AAGACCAATGGACTCTTAAAGAGAACAGGAATGCTTTCGCAAGGATCCTC
FD570243       --> AAGACCAATGGACTCTTAAAGAGAACAGGAATGCTTTCGCAAGGATCCTC
EX894775       --> AAGACCAATGGACTCTTAAAGAGAACAGGAATGCTTTCGCAAGGATCCTC
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> ..................................................
FD987938       --> ..................................................

               201    -    251
UN13054        --> TTTCGTCCTAGGATTCTGATTGATGTGAGCAAGATTGATATGACAACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- ..................................................
EX753389       <-- ..................................................
EY934006       <-- ..................................................
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> TTTCGTCCTAGGATTCTGATTGATGTGAGCAAGATTGATATGACAACAAC
EY939843       --> TTTCGTCCTAGGATTCTGATTGATGTGAGCAAGATTGATATGACAACAAC
EV568006       --> TTTCGTCCTAGGATTCTGATTGATGTGAGCAAGATTGATATGACAACAAC
EY901277       --> TTTCGTCCTAGGATTCTGATTGATGTGAGCAAGATTGATATGACAACAAC
EY940865       --> TTTCGTCCTAGGATTCTGATTGATGTGAGCAAGATTGATATGACAACAAC
FD570243       --> TTTCGTCCTAGGATTCTGATTGATGTGAGCAAGATTGATATGACAACAAC
EX894775       --> TTTCGTCCTAGGATTCTGATTGATGTGAGCAAGATTGATATGACAACAAC
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> ..................................................
FD987938       --> ..................................................

               251    -    301
UN13054        --> CGTCTTGGGATTCAAGATCTCCATGCCAATCATGGTTGCTCCTACTGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- ..................................................
EX753389       <-- ..................................................
EY934006       <-- ..................................................
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> CGTCTTGGGATTCAAGATCTCCATGCCAATCATGGTTGCTCCTACTGCCA
EY939843       --> CGTCTTGGGATTCAAGATCTCCA...........................
EV568006       --> CGTCTCGGGATTCAAGATCTCCATGCCAATCATGGTTGCTCCTACTGCCA
EY901277       --> CGTCTTGGGATTCAAGATCTCCATGCCAATCATGGTTGCTCCTACTGCCA
EY940865       --> CGTCTTGGGATTCAAGATCTCCATGCCAATCATGGTTGCTCCTACTGCCA
FD570243       --> CGTCTTGGGATTCAAGATCTCCATGCCAATCATGGTTGCTCCTACTGCCA
EX894775       --> CGTCTTGGGATTCAAGATCTCCATGCCAATCATGGTTGCTCCTACTGCCA
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> ..................................................
FD987938       --> ..................................................

               301    -    351
UN13054        --> TGCAAAAGATGGCTCACCCGGAAGGGGAATATGCTACGGCTAGAGCTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- ..................................................
EX753389       <-- ..................................................
EY934006       <-- ..................................................
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> TGCAAAAGATGGCTCACCCGGAAGGGGAATATGCTACGGCTAGAGCTGCG
EY939843       --> ..................................................
EV568006       --> TGCAAAAGATGGCTCACCCGGAAGGGGAATATGCTACGGCTAGAGCTGCA
EY901277       --> TGCAAAAGATGGCTCACCCGGAAGGGGAATATGCTACGGCTAGAGCTGCA
EY940865       --> TGCAAAAGATGGCTCACCCGGAAGGGGAATATGCTACGGCTAGAGCTGCA
FD570243       --> TGCAAAAGATGGCTCACCCGGAAGGGGAATATGCTACGGCTAGAGCTGCA
EX894775       --> TGCAAAAGATGGCTCACCCGGAAGGGGAATATGCTACGGCTAGAGCTGCA
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> ..................................................
FD987938       --> ..................................................

               351    -    401
UN13054        --> TCTGCTGCTGGAACCATCATGACCCTCTCTTCATGGGCTACTTCCAGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW721653       <-- ..................................................  Raphanus sativus var. oleiformis
EX753389       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY934006       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD554140       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX899045       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD555480       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD983893       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY937753       --> TCTGCTGCTGGAACCATCATGACCCTCTCTTCATGGGCTACTTCCAGCGT  Raphanus sativus cv Early Scarlet Globe
EY939843       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV568006       --> TCTGCTGCTGGAACCATCATGACACTCTCTTCATGGGCTACTTCCAGCGT  Raphanus raphanistrum subsp. landra
EY901277       --> TCTGCTGCTGGAACCATCATGACACTCTCTTCATGGGCTACTTCCAGCGT  Raphanus raphanistrum subsp. maritimus
EY940865       --> TCTGCTGCTGGAACCATCATGACCCTCTCTTCATGGGCTACTTCCAGCGT  Raphanus sativus cv Early Scarlet Globe
FD570243       --> TCTGCTGCTGGAACCATCATGACCCTCTCTTCATGGGCTACTTCCAGCGT  Raphanus sativus cv Early Scarlet Globe
EX894775       --> TCTGCTGCTGGAACCATCATGACCCTCTCTTCATGGGCTACTTCCAGCGT  Raphanus sativus cv Early Scarlet Globe
EX749784       --> .................gATGACACTCTCTTCATGGGCTACTTCCAGCGT  Raphanus raphanistrum subsp. maritimus
FD558569       --> ..................................................  Raphanus raphanistrum subsp. landra
FD559842       --> ..................................................  Raphanus raphanistrum subsp. landra
FD987938       --> ..................................................  Raphanus raphanistrum subsp. landra

               401    -    451
UN13054        --> TGAAGAAGTTGCTTCCACAGGTCCAGGGATCAGATTCTTCCAGCTCTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ....GAAGTTGCTTCCACAGGTCCAGGGATCAGATTCTTCCAGCTCTATG
EW721653       <-- ..................................................
EX753389       <-- ..................................................
EY934006       <-- ..................................................
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> TGAAGAAGTTGCTTCCACAGGTCCAGGGATCAGATTCTTCCAGCTCTATG
EY939843       --> ..................................................
EV568006       --> TGAAGAAGTTGCTTCCACAGGTCCAGGGATCAGATTCTTCCAGCTCTATG
EY901277       --> TGAAGAAGTTGCTTCCACAGGTCCAGGGATCAGATTCTTCCAGCTCTATG
EY940865       --> TGAAGAAGTTGCTTCCACAGGTCCAGGGATCAGATTCTTCCAGCTCTATG
FD570243       --> TGAAGAAGTTGCTTCCACAGGTCCAGGGATCAGATTCTTCCAGCTCTATG
EX894775       --> TGAAGAAGTTGCCTCCACAGGTCCAGGGATCAGATTCTTCCAGCTCTATG
EX749784       --> TGAAGAAGTTGCTTCCACAGGTCCAGGGATCAGATTCTTCCAGCTCTATG
FD558569       --> ..................................................
FD559842       --> ..................................................
FD987938       --> ..................................................

               451    -    501
UN13054        --> TATACAAGAACAGGAAAGTGGTTGAGCAGCTTGTAAGAAGAGCCGAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- TATACAAGAACAGGAAAGTGGTTGAGCAGCTTGTAAGAAGAGCCGAGAAA  Raphanus raphanistrum subsp. landra
EW721653       <-- ..................................................  Raphanus sativus var. oleiformis
EX753389       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY934006       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD554140       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX899045       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD555480       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD983893       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY937753       --> TATACAAGAACAGGAAAGTGGTTGAACAGCTTGTAAGAAGAGCCGAGAAA  Raphanus sativus cv Early Scarlet Globe
EY939843       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV568006       --> TATACAAGAACAGGAAAGTGGTTGAGCAGCTTGTAAGAAGAGCCGAGAAA  Raphanus raphanistrum subsp. landra
EY901277       --> TATACAAGAACAGGAAAGTGGTTGAGCAGCTTGTAAGAAGAGCCGAGAAA  Raphanus raphanistrum subsp. maritimus
EY940865       --> TATACAAGAACAGGAAAGTGGTTGAACAGCTTGTAAGAAGAGCCGAGAAA  Raphanus sativus cv Early Scarlet Globe
FD570243       --> TATACAAGAACAGGAAAGTGGTTGAACAGCTTGTAAGAAGAGCCGAGAAA  Raphanus sativus cv Early Scarlet Globe
EX894775       --> TATACAAGAACAGGAAAGTGGTTGAACAGCTTGTAAGAAGAGCCGAGAAA  Raphanus sativus cv Early Scarlet Globe
EX749784       --> TATACAAGAACAGGAAAGTGGTTGAGCAGCTTGTAAGAAGAGCCGAGAAA  Raphanus raphanistrum subsp. maritimus
FD558569       --> ......gGAACAGGAAAGTGGTTGAGCAGCTTGTAAGAAGAGCCGAGAAA  Raphanus raphanistrum subsp. landra
FD559842       --> ..................................................  Raphanus raphanistrum subsp. landra
FD987938       --> ..................................................  Raphanus raphanistrum subsp. landra

               501    -    551
UN13054        --> GCTGGATTCAAAGCCATTGCTCTCACTGTAGACACTCCAAGGCTAGGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- GCTGGATTCAAAGCCATTGCTCTCACTGTAGACACTCCAAGGCTAGGTCG  Raphanus raphanistrum subsp. landra
EW721653       <-- ..................................................  Raphanus sativus var. oleiformis
EX753389       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY934006       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD554140       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX899045       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD555480       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD983893       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY937753       --> GCTGGATTCAAAGCCATTGCTCTCACAGTAGACACCCCAAGGCTAGGTCG  Raphanus sativus cv Early Scarlet Globe
EY939843       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV568006       --> GCTGGATTCAAAGCCATTGCTCTCACTGTAGACACTCCAAGGCTAGGTCG  Raphanus raphanistrum subsp. landra
EY901277       --> GCTGGATTCAAAGCCATTGCTCTCACTGTAGACACTCCAGGGCTAGGTCG  Raphanus raphanistrum subsp. maritimus
EY940865       --> GCTGGATTCAAAGCCATTGCTCTCACAGTAGACACCCCAAGGCTAGGTCG  Raphanus sativus cv Early Scarlet Globe
FD570243       --> GCTGGATTCAAAGCCATTGCTCTCACAGTAGACACCCCAAGGCTAGGTCG  Raphanus sativus cv Early Scarlet Globe
EX894775       --> GCTGGATTCAAAGCCATTGCTCTCACAGTAGACACCCCAAGGCTAGGTCG  Raphanus sativus cv Early Scarlet Globe
EX749784       --> GCTGGATTCAAAGCCATTGCTCTCACTGTAGACACTCCAAGGCTAGGTCG  Raphanus raphanistrum subsp. maritimus
FD558569       --> GCTGGATTCAAAGCCATTGCTCTCACTGTAGACACTCCAAGGCTAGGTCG  Raphanus raphanistrum subsp. landra
FD559842       --> ..................................................  Raphanus raphanistrum subsp. landra
FD987938       --> ..................................................  Raphanus raphanistrum subsp. landra

               551    -    601
UN13054        --> CAGAGAGTCTGATATCAAGAACAGGTTCACTTTGCCTCCGAACTTGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- CAGAGAGTCTGATATCAAGAACAGGTTCACTTTGCCTCCGAACTTGACAT
EW721653       <-- ..................................................
EX753389       <-- ..................................................
EY934006       <-- ..................................................
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> CAGAGAGTCTGATATCAAGAACAGGTTCACTTTGCCTCCGAACTTGACAT
EY939843       --> ..................................................
EV568006       --> CAGAGAGTCTGATATCAAGAACAGGTTCACTTTGCCTCCGAACTTGACAT
EY901277       --> CAGAGAGTCTGATATCAAGAACAGGTTCACTTTGCCTCCGAACTTGACAT
EY940865       --> CAGAGAGTCTGATATCAAGAACAGGTTCACTTTGCCTCCGAACTTGACAT
FD570243       --> CAGAGAGTCTGATATCAAGAACAGGTTCACTTTGCCTCCGAACTTGACAT
EX894775       --> CAGAGAGTCTGATATCAAGAACAGGTTCACTTTGCCTCCGAACTTGACAT
EX749784       --> CAGAGAGTCTGATATCAAGAACAGGTTCACTTTGCCTCCGAACTTGACAT
FD558569       --> CAGAGAGTCTGATATCAAGAACAGGTTCACTTTGCCTCCGAACTTGACAT
FD559842       --> ..................................................
FD987938       --> ..................................................

               601    -    651
UN13054        --> TGAAGAACTTT-GAAGGTCTTGACCTTGGAAAGATGGATGAGGCAAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- TGAAGAACTTT-GAAGGTCTTGACCTTGGAAAGATGGATGAGGCAAATGA
EW721653       <-- attgagACTTT-GAAGGTCT-GA-CTTGGAAAGATGGATGAGGCAAATGA
EX753389       <-- .....................................ATGAGGCAAATGA
EY934006       <-- ..................................................
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> TGAAGAACTTT-GAAGGTCTTGACCTTGGAAAGATGGATGACGCAAATGA
EY939843       --> ..................................................
EV568006       --> TGAAGAACTTTTGAAGGTCTTGACCTTGGAAAGATGGATGAGGCAAATGA
EY901277       --> TGAAGAACTTT-GAAGGTCTTGACCTTGGAAAGATGGATGAGGCAAATGA
EY940865       --> TGAAGAACTTT-GAAG-TCTTGACCTTGGAAAGATGGATGAG-CAAATGA
FD570243       --> TGAAGAACTTT-GAAGGTCTTGACCTCGGAAAGATGGATGAGGCAAATGA
EX894775       --> TGAAGAACTTT-GAAGGTCTTGACCTTGGAAAGATGGATGAGGCAAATGA
EX749784       --> TGAAGAACTTT-GAAGGTCTTGACCTTGGAAAGATGGATGAGGCAAATGA
FD558569       --> TGAAGAACTTT-GAAGGTCCTGACCTTGGAAAGAT--ATGAGGCAAATGA
FD559842       --> ..................................................
FD987938       --> ..................................................

               651    -    701
UN13054        --> CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACTTTGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACTTTGAGCT  Raphanus raphanistrum subsp. landra
EW721653       <-- CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACCTTGAGCT  Raphanus sativus var. oleiformis
EX753389       <-- CTCTGGCT-GGCTTCATATGTTGCTGGTCAAATTGAC-GTACTTTGAGCT  Raphanus raphanistrum subsp. maritimus
EY934006       <-- ..............................................AGCT  Raphanus sativus cv Early Scarlet Globe
FD554140       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX899045       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD555480       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD983893       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY937753       --> CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACCTTGAGCT  Raphanus sativus cv Early Scarlet Globe
EY939843       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV568006       --> CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACTTTGAGCT  Raphanus raphanistrum subsp. landra
EY901277       --> CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACTTCGAGCT  Raphanus raphanistrum subsp. maritimus
EY940865       --> CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACCTTGAGCT  Raphanus sativus cv Early Scarlet Globe
FD570243       --> CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACCTTGAGCT  Raphanus sativus cv Early Scarlet Globe
EX894775       --> CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACCTTGAGCT  Raphanus sativus cv Early Scarlet Globe
EX749784       --> CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACTTTGAGCT  Raphanus raphanistrum subsp. maritimus
FD558569       --> CTCTGGCTTGGCTTCATATGTTGCTGGTCAAATTGACCGTACTTTGAGCT  Raphanus raphanistrum subsp. landra
FD559842       --> ..................................................  Raphanus raphanistrum subsp. landra
FD987938       --> ..................................................  Raphanus raphanistrum subsp. landra

               701    -    751
UN13054        --> GG-AAGGATGTGCAGTGGCTCCAGACAATCACCAGCATGCCAATTCTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- GG-AAGGATGTGCAGCGGCTCCAGACAATCACCAGCATGCCAATTCTTGT
EW721653       <-- GG-AAGGATGTGCAGTGGCTCCAGACAATCACCAGCATGCCAATTCTTGT
EX753389       <-- AG-AAGGATGTGCAGTGGCTCCAGACAATCACCAGCATGCCAATTCTTGT
EY934006       <-- GG-AAGGATGTGCAGTGGCTCCAGACAATCACCAGCATGCCAATTCTTGT
FD554140       <-- ..................................................
EX899045       <-- ..................................................
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> GG-AAGGATGTGCAGTGGCTC-AGACA-TCA-CAGCATGCCAATTCTTGT
EY939843       --> ..................................................
EV568006       --> GGGAAGGATGTGCAGCGGCTCCAGACAATCACCAGCATGCCAATTCTTGT
EY901277       --> GG-AAGGATGTGCAGTGGCTCCAGACA-TCACCAGCATGCCA-TTTTTGT
EY940865       --> GG-AAGGATGTGCAGTGGCTCag...........................
FD570243       --> GG-AAG-ATGTGCAGTGGCTCCAGACA-TCACCAGCATGCCAATTCTT..
EX894775       --> GG-AAGGATGTGCAGTGGCTCCAGACAATCACCAGCATGCCAATTCTTGT
EX749784       --> AG-AAGGATGTGCAGTGGCTCCAGACAATCACCAGCATGCCAATTCTTGT
FD558569       --> GG-AAGGATGTGCAGTGGCTCCAGACAATCACCAGCATGCCAATTCTTGT
FD559842       --> ..................................................
FD987938       --> ..................................................

               751    -    801
UN13054        --> CAAGGGTGTTCTTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- CAAGGGTGTTCTTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGTG  Raphanus raphanistrum subsp. landra
EW721653       <-- CAAGGGTGTTCTTACAGGAGAAGATGCAAGGATAGCGATTCAAGCTGGAG  Raphanus sativus var. oleiformis
EX753389       <-- CAAGGGTGTCCTTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGTG  Raphanus raphanistrum subsp. maritimus
EY934006       <-- CAAGGGTGTTCTTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGAG  Raphanus sativus cv Early Scarlet Globe
FD554140       <-- CAAGGGTGTTCTTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGTG  Raphanus raphanistrum subsp. landra
EX899045       <-- .AAGGGTGTTCTTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGAG  Raphanus sativus cv Early Scarlet Globe
FD555480       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD983893       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY937753       --> CAAGG-TGTTCTT.....................................  Raphanus sativus cv Early Scarlet Globe
EY939843       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV568006       --> C.................................................  Raphanus raphanistrum subsp. landra
EY901277       --> CAAGG-TGTTCTTACAG-AGAGGATGCA......................  Raphanus raphanistrum subsp. maritimus
EY940865       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD570243       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX894775       --> CAAGGGTGTTCTT.....................................  Raphanus sativus cv Early Scarlet Globe
EX749784       --> CAAGGGTGTCCTTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGTG  Raphanus raphanistrum subsp. maritimus
FD558569       --> CAAGGGTGTTCTTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGTG  Raphanus raphanistrum subsp. landra
FD559842       --> ..................................................  Raphanus raphanistrum subsp. landra
FD987938       --> ..................................................  Raphanus raphanistrum subsp. landra

               801    -    851
UN13054        --> CAGCAGGGATCATTGTGTCAAACCATGGAGCTCGCCAGCTTGACTATGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- CAGCAGGGATCATTGTGTCAAACCATGGAGCTCGCCAGCTTGACTATGTC
EW721653       <-- CAGCAGGGATCATTGTGTCAAACCATGGAGCTCGCCAGCTTGACTATGTC
EX753389       <-- CAGCAGGGATCATTGTGTCAAACCATGGAGCTCGCCAGCTTGACTATGTC
EY934006       <-- CAGCAGGGATCATTGTGTCAAACCATGGAGCTCGCCAGCTTGACTATGTC
FD554140       <-- CAGCAGGGATCATTGTGTCAAACCATGGAGCTCGCCAGCTTGACTATGTC
EX899045       <-- CAGCAGGGATCATTGTGTCAAACCATGGAGCTCGCCAGCTTGACTATGTC
FD555480       <-- ..................................................
FD983893       <-- ..................................................
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> CAGCAGGGATCATTGTGTCAAACCATGGAGCTCGCCAGCTTGACTATGTC
FD558569       --> CAGCAGGGATCATTGTGTCAAACCATGGAGCTCGCCAGCTTGACTATGTC
FD559842       --> ..................................................
FD987938       --> ..................................................

               851    -    901
UN13054        --> CCAGCCACTATCTCAGCACTTGAAGAGGTTGTTAAAGCTACACAAGGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- CCAGCCACTATCTCAGCACTTGAAGAGGTTGTTAAAGCTACACAAGGACG  Raphanus raphanistrum subsp. landra
EW721653       <-- CCAGCCACTATCTCAGCACTTGAAGAGGTTGTTAAAGCGACACAAGGACG  Raphanus sativus var. oleiformis
EX753389       <-- CCAGCCACTATCTCAGCACTTGAAGAGGTTGTTAAAGCTACATAAGGACG  Raphanus raphanistrum subsp. maritimus
EY934006       <-- CCAGCCACTATCTCAGCACTTGAAGAGGTTGTTAAAGCGACACAAGGACG  Raphanus sativus cv Early Scarlet Globe
FD554140       <-- CCAGCCACTATCTCAGCACTTGAAGAGGTTGTTAAAGCTACACAAGGACG  Raphanus raphanistrum subsp. landra
EX899045       <-- CCAGCCACTATCTCAGCACTTGAAGAGGTTGTTAAGGCGACACAAGGACG  Raphanus sativus cv Early Scarlet Globe
FD555480       <-- ................................................gG  Raphanus raphanistrum subsp. landra
FD983893       <-- ................................................gG  Raphanus raphanistrum subsp. landra
EY937753       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY939843       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV568006       --> ..................................................  Raphanus raphanistrum subsp. landra
EY901277       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY940865       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD570243       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX894775       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX749784       --> CCAGCCACTATCTCAGCACTTGAAGAGGTTGTTAAAGCTACATAAGGACG  Raphanus raphanistrum subsp. maritimus
FD558569       --> CCAGCCACTATCTCAGCACTTGAAGAGGTTGTTAAAGCTACACAAGGACG  Raphanus raphanistrum subsp. landra
FD559842       --> ................................................gG  Raphanus raphanistrum subsp. landra
FD987938       --> ................................................gG  Raphanus raphanistrum subsp. landra

               901    -    951
UN13054        --> AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGATGTCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGATGTCTTCA
EW721653       <-- AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGATGTCTTCA
EX753389       <-- AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGATGTCTTCA
EY934006       <-- AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGATGTCTTCA
FD554140       <-- AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGATGTCTTCA
EX899045       <-- AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGATGTCTTCA
FD555480       <-- AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGACGTCTTCA
FD983893       <-- AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGACGTCTTCA
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGATGTCTTCA
FD558569       --> AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGATGTCTTCA
FD559842       --> AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGACGTCTTCA
FD987938       --> AGTTCCTGTCTTCTTAGATGGTGGTGTTCGACGTGGCACTGACGTCTTCA

               951    -   1001
UN13054        --> AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
EW721653       <-- AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
EX753389       <-- AAGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
EY934006       <-- AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
FD554140       <-- AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
EX899045       <-- AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
FD555480       <-- AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
FD983893       <-- AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> AAGCACTTGCACTTGGAGCCTCAGG-ATATTTATTGGAAGACCAGTGGTA
FD558569       --> AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
FD559842       --> AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA
FD987938       --> AGGCACTTGCACTTGGAGCCTCAGGGATATTTATTGGAAGACCAGTGGTA

               1001   -   1051
UN13054        --> TTCTCACTTGCTGCTGAAGGAGAGGCTGGAGTCAGAAAAGTGCTTCAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- TTCTCACTTGCTGCTGAAGGAGAGGCTGGAGTCAGAAAAGTGCTTCAAAT
EW721653       <-- TTCTCACTTGCTGCTGAAGGAGAAGCTGGAGTCAGAAAAGTGCTTCAAAT
EX753389       <-- TTCTCACTTGCTGCTGAAGGAGAGGCTGGAGTCAGAAAAGTGCTTCAAAT
EY934006       <-- TTCTCACTTGCTGCTGAAGGAGAAGCTGGAGTCAGAAAAGTGCTTCAAAT
FD554140       <-- TTCTCACTTGCTGCTGAAGGAGAGGCTGGAGTCAGAAAAGTGCTTCAAAT
EX899045       <-- TTCTCACTTGCTGCTGAAGGAGAAGCTGGAGTCAGAAAAGTGCTTCAAAT
FD555480       <-- TTCTCACTTGCTGCTGAAGGAGAGGCTGGAGTCAGAAAAGTGCTTCAAAT
FD983893       <-- TTCTCACTTGCTGCTGAAGGAGAGGCTGGAGTCAGAAAAGTGCTTCAAAT
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> TTCTCACTTGCTGCTGAAGGAGAGGCTGGAGTCAGAAAAGTGCTTCAAAT
FD558569       --> TTCTCACTTGCTGCTGAAGGAGAGGCTGGAGTCAGAAAAGTGCTTCAAAT
FD559842       --> TTCTCACTTGCTGCTGAAGGAGAGGCTGGAGTCAGAAAAGTGCTTCAAAT
FD987938       --> TTCTCACTTGCTGCTGAAGGAGAGGCTGGAGTCAGAAAAGTGCTTCAAAT

               1051   -   1101
UN13054        --> GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTC
EW721653       <-- GCTACGCGATGGGTTCAAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTC
EX753389       <-- GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTT
EY934006       <-- GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTT
FD554140       <-- GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTT
EX899045       <-- GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTC
FD555480       <-- GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTC
FD983893       <-- GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTC
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> GCTACGTGATGAGT-CGAGCTAACCATGGCGTTAAGTGGGTGCAG-TCTC
FD558569       --> GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTC
FD559842       --> GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTC
FD987938       --> GCTACGTGATGAGTTCGAGCTAACCATGGCGTTAAGTGGGTGCAGGTCTC

               1101   -   1151
UN13054        --> TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC
EW721653       <-- TCAGTGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC
EX753389       <-- TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC
EY934006       <-- TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC
FD554140       <-- TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC
EX899045       <-- TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC
FD555480       <-- TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC
FD983893       <-- TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> TCAGCGAGATCACACGTAAC-ACATTAT......................
FD558569       --> TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAA-CTCCACGC
FD559842       --> TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC
FD987938       --> TCAGCGAGATCACACGTAACCACATTATCACAGAGTGGGAAACTCCACGC

               1151   -   1201
UN13054        --> CATTTGCCTAGGTTATAGAGGCCAAAACAAAGAAACAGAGAAGAGCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- CATTTGCCTAGGTTATAGAGGCC...........................
EW721653       <-- CATTTGCCTAGGTTATAGAGGCCAAAACAAAGAAACAGAGAAGAGCAACA
EX753389       <-- CATTTGCCTAGGTTATAGAGGCCAAAACAAAGAAACAGAGAAGAGCAACA
EY934006       <-- CATTTGCCTAGGTTATAGAGGCCAAAACAAAGAAACAGAGAAGAGGAACA
FD554140       <-- CATTTGCCTAGGTTATAGAGGCCAAAACAAAGAAACAGAGAAGAGCAACA
EX899045       <-- CATTTGCCTAGGTTATAGAGGCCAAAACAAAGAAACAGAGAAGAGGGACA
FD555480       <-- CATTTGCCTAGGTTATAGAGGCCAAAACAAAGAAACAGAGAAGAGCAACA
FD983893       <-- CATTTGCCTAGGTTATAGAGGCCAAAACAAAGAAACAGAGAAGAGCAACA
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> ..................................................
FD558569       --> CATTTGCCTAGGT-ATAGAGGCaa..........................
FD559842       --> CATTTGCCTAGGTTATAGAGGCCAAAACAAAGAAACAGAGAAGAGCAACA
FD987938       --> CATTTGCCTAGGTTATAGAGGCCAAAACAAAGAAACAGAGAAGAGCAACA

               1201   -   1251
UN13054        --> ACACAGAGGTAAACCTAATGAGATTCTGATTGGTGGTGACTTGGCATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- ACACAGAGGTAAACCTAATGAGATTCTGATTGGTGGTGACTTGGCATCTA
EX753389       <-- ACACAGAGGTAAACCTAATGAGATTCTGATTGGTGGTGACTTGGCATCTA
EY934006       <-- ACACAGAGGTAAACCTAATGAGATTCTGATT---GGAGACTTGGCATTTA
FD554140       <-- ACACAGAGGTAAACCTAATGAGATTTTGATTGGTGGTGACTTGGCATTTA
EX899045       <-- ACACAGAGGTAAACCTAATGAGATTCTGATT---GGAGACTTGGCATCTA
FD555480       <-- ACACAGAGGTAAACCTAATGAGATTCTGATTGGTGGTGACTTGGCATCTA
FD983893       <-- ACACAGAGGTAAACCTAATGAGATTCTGATTGGTGGTGACTTGGCATCTA
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> ACACAGAGGTAAACCTAATGAGATTCTGATTGGTGGTGACTTGGCATCTA
FD987938       --> ACACAGAGGTAAACCTAATGAGATTCTGATTGGTGGTGACTTGGCATCTA

               1251   -   1301
UN13054        --> CGCTACTATTTATCTCTCAAGGATTTGTTTTTTTTTTT---GCTGTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- CGCTACTATTTATCTCTCAAGGATTTGTTTTTTTT--T---GCTGTAATT
EX753389       <-- CGCTACTATTTATCTCTCAAGGATTTGTTTTTTTT--T---GCTGTAATT
EY934006       <-- CGCTACTATTTATCT--CAAGGACTTGTTTTTTTT--T---GCTGT-ATT
FD554140       <-- CGCTACTATTTATCTCTCAAGGATTTGTTTTTTTTTTTTTTGCTGTAATT
EX899045       <-- CGCTACTATTTATCT--CAAGGACTTGTTTTTTTTTT----GCTGTA-TT
FD555480       <-- CGCTACTATTTATCTCTCAAGGATTTGTTTTTTTTTTT---GCTGTAATT
FD983893       <-- CGCTACTATTTATCTCTCAAGGATTTGTTTTTTTTTTT---GCTGTAATT
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> CGCTACTATTTATCTCTCAAGGATTTGTTTTTTTTTTT---GCTGTAATT
FD987938       --> CGCTACTATTTATCTCTCAAGGATTTGTTTTTTTTTTT---GCTGTAATT

               1301   -   1351
UN13054        --> GAAACACACAAAAACAATGACCGGAGACTCTATGTAATGCTATTTGGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- GAAACACACAAAAACAATGACCGGAGACTCTATGTAATGCTATTTGGCTA
EX753389       <-- GAAACACACAAAAACAATGACCGGAGACTCTATGTAATGCTATTTGGCTA
EY934006       <-- GAAACACACAAAAACAATGACCGGAGACTCTATGTAATGCTATTTGGCTA
FD554140       <-- GAAACACACAAAAACAATGTCCGGAGACTCTATGTAATGCTATTTGGCTA
EX899045       <-- GAAACACACAAAAACAATGACCGGAGACTCTATGTAATGCTATTTGGCTA
FD555480       <-- GAAACACACAAAAACAGTGACCGGAGACTCTATGTAATGCTATTTGGCTA
FD983893       <-- GAAACACACAAAAACAGTGACCGGAGACTCTATGTAATGCTATTTGGCTA
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> GAAACACACAAAAACAGTGACCGGAGACTCTATGTAATGCTATTTGGCTA
FD987938       --> GAAACACACAAAAACAGTGACCGGAGACTCTATGTAATGCTATTTGGCTA

               1351   -   1401
UN13054        --> CTTCTATACCCTCAGTCCATTCTTCTTCCTTGTAGCAATGCTACTTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- CTTCTATACCCTCAGTCCATTCTTCTTCCTTGTAGCAATGCTACTTGGAG
EX753389       <-- CTTCTATACCCTCAGTCCATTCTTCTTCCTTGTAGCAATGCTACTTGGAG
EY934006       <-- CTTCTATACCTTCAGTCCATTCTTCTTCCTTGTAGCAATGCTACTTGGAG
FD554140       <-- CTTCTATACCCTCAGTCCATTCTTCTTCCTTGTAGCAATGCTACTTGGAG
EX899045       <-- CTTCTATACCTTCAGTCCATTCTTCTTCCTTGTAGCAATGCTACTTGGAG
FD555480       <-- CTTCTATACCCTCAGTCCATTCTTCTTCCTTGTAGCAATGCTACTTGGAG
FD983893       <-- CTTCTATACCCTCAGTCCATTCTTCTTCCTTGTAGCAATGCTACTTGGAG
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> CTTCTATACCCTCAGTCCATTCTTCTTCCTTGTAGCAATGCTACTTGGAG
FD987938       --> CTTCTATACCCTCAGTCCATTCTTCTTCCTTGTAGCAATGCTACTTGGAG

               1401   -   1451
UN13054        --> ATTCTATGTAATGCTATTTGAATTTTTAGAACATTCTAAGGGTATTATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV572823       <-- ..................................................
EW721653       <-- ATTCTATGTAATGCTATTTGAATTTTTAGAAC..................
EX753389       <-- ATTCTATGTAATGCTATTTGAATTTT-AGAACATTCTAAGGGTATTATTc
EY934006       <-- ATTCTATGTAATGCTATTTGAATTTTTAGAACATTCT.............
FD554140       <-- ATTCTATGTAATGCTATTTGAATTTTTAGAACATTCT.............
EX899045       <-- ATTCTATGTAATGCTATTTGAATTTTTAGAACATTCTAAGGGTATTATTT
FD555480       <-- ATTCTATct.........................................
FD983893       <-- ATTCTATct.........................................
EY937753       --> ..................................................
EY939843       --> ..................................................
EV568006       --> ..................................................
EY901277       --> ..................................................
EY940865       --> ..................................................
FD570243       --> ..................................................
EX894775       --> ..................................................
EX749784       --> ..................................................
FD558569       --> ..................................................
FD559842       --> ATTCTATct.........................................
FD987938       --> ATTCTATct.........................................

               1451   -   1501
UN13054        --> CAATGAAATTCCC
                   ~~~~~~~~~~~~~
EV572823       <-- .............
EW721653       <-- .............
EX753389       <-- c............
EY934006       <-- .............
FD554140       <-- .............
EX899045       <-- CAATGAAATTCCC
FD555480       <-- .............
FD983893       <-- .............
EY937753       --> .............
EY939843       --> .............
EV568006       --> .............
EY901277       --> .............
EY940865       --> .............
FD570243       --> .............
EX894775       --> .............
EX749784       --> .............
FD558569       --> .............
FD559842       --> .............
FD987938       --> .............