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Alignment for radish unigene UN13092

               1      -     51
UN13092        --> TCTTTTCAGACAACGCAAGATTTGGTGAGGGAGAAGTTGTTGAATGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- ..................................................
FD975636       <-- ..................................................
FD982915       <-- ..................................................
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> TCTTTTCAGACAACGCAAGATTTGGTGAGGGAGAAGTTGTTGAATGTGAT
FD535068       --> ..................................................
EY937578       --> ..................................................
FD533975       --> ..................................................
FD986714       --> ..................................................

               51     -    101
UN13092        --> GGAGAGTTTCTCAAAGTCGCAAGAGTCTTTTGATCTCCAAGATGTGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- ..................................................
FD975636       <-- ..................................................
FD982915       <-- ..................................................
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> GGAGAGTTTCTCAAAGTCGCAAGAGTCTTTTGATCTCCAAGATGTGCTCT
FD535068       --> ..................................................
EY937578       --> ..................................................
FD533975       --> ..................................................
FD986714       --> ..................................................

               101    -    151
UN13092        --> TGCGCTTGACGTTTGACAACATCTGCATCGCTGGCCTTGGTGACAACCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- ..................................................
FD975636       <-- ..................................................
FD982915       <-- ..................................................
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> TGCGCTTGACGTTTGACAACATCTGCATCGCTGGCCTTGGTGACAACCCT
FD535068       --> ..................................................
EY937578       --> ..................................................
FD533975       --> ..................................................
FD986714       --> ..................................................

               151    -    201
UN13092        --> GGAACTTTGGATTCTGATCTTCCTCTAGTCCCATTTGCTCAAGCTTTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- ..................................................
FD975636       <-- ..................................................
FD982915       <-- ..................................................
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> GGAACTTTGGATTCTGATCTTCCTCTAGTCCCATTTGCTCAAGCTTTCGA
FD535068       --> ..................................................
EY937578       --> ..................................................
FD533975       --> ..................................................
FD986714       --> ..................................................

               201    -    251
UN13092        --> AGAAGCAACTGAATCTACTCTTTTTAGGTTCATGATTCCTCCTTTTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- ..................................................
FD975636       <-- ..................................................
FD982915       <-- ..................................................
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> AGAAGCAACTGAATCTACTCTTTTTAGGTTCATGATTCCTCCTTTTGTGT
FD535068       --> .................................................g
EY937578       --> ..................................................
FD533975       --> ..................................................
FD986714       --> ..................................................

               251    -    301
UN13092        --> GGAAGACTATGAGGTTCTTGGACATAGGGTATGAGAAAGGTCTGAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- ..................................................
FD975636       <-- ..................................................
FD982915       <-- ..................................................
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> GGAAGACTATGAGGTTCTTGGACATAGGGTATGAGAAAGGTCTGAGGAAG
FD535068       --> GGAAGACTATGAGGTTCTTGGACATAGGGTATGAGAAAGGTCTGAGGAAG
EY937578       --> ...........gGGTTCTTGGACATAGGGTATGAGAAAGGTCTGAGGAAA
FD533975       --> ..................................................
FD986714       --> ..................................................

               301    -    351
UN13092        --> GCTGTTGAGGTGGTCCATGAGTTTGTAGACAAGATGGTCGTTGAACGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- ..................................................
FD975636       <-- ..................................................
FD982915       <-- ..................................................
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> GCTGTTGAGGTGGTCCATGAGTTTGTAGACAAGATGGTCGTTGAACGTAT
FD535068       --> GCTGTTGAGGTGGTCCATGAGTTTGTAGACAAGATGGTCGTTGAACGTAT
EY937578       --> GCTGTTGAGGTGGTCCATGGGTTTGTAGACAAGATGGTCGTTGAACGTAT
FD533975       --> ..................................................
FD986714       --> ..................................................

               351    -    401
UN13092        --> CTGCAAACTCAAGGAGGCTAAAACGTTAGGGAACAGATCAGACGTCCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- ..................................................
FD975636       <-- ..................................................
FD982915       <-- ..................................................
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> CTGCAAACTCAAGGAGGCTAAAACGTTAGGGAACAGATCAGACGTCCTCT
FD535068       --> CTGCAAACTCAAGGAGGCTAAAACGTTAGGGAACAGATCAGACGTCCTCT
EY937578       --> CTGCAAACTCAAGGAGGAGAAAACGTTAGGGAACAGATCAGACGTCCTCT
FD533975       --> ..................................................
FD986714       --> ..................................................

               401    -    451
UN13092        --> CGAGAATCATCGAGATAGAAAGTCATAAGAAGAGTGATGAGAAAGATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- ...........................AGAAGAGCGATGAGAAAGATC-T
FD975636       <-- ..................................................
FD982915       <-- ..................................................
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> CGAGAATCATCGAGATAGAAAGTCATAAGAAGAGTGATGAGAAAGATCCT
FD535068       --> CGAGAATCATCGAGATAGAAAGTCATAAGAAGAGTGATGAGAAAGATCCT
EY937578       --> CGAGAATCATCGAGATAGAAAGTCACAAGAAGAGCGATGAGAAAGATCCT
FD533975       --> ..................................................
FD986714       --> ..................................................

               451    -    501
UN13092        --> TCTATAGTCAAGTTTTTCAGACAGTTCTGCACGAGTTTCATCTTAGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- TCTATAGTCAAGTTTT-CAGACAGTTCTGCACGAGTTTCATCTTAGCTGG
FD975636       <-- .......TCAAGTTTT-CAGACAGTTCTGCACGAGTTTCATCTTAGCTGG
FD982915       <-- ................................................GG
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> TCTATAGTCAAGTTTTTCAGACAGTTCTGCACGAGTTTCATCTTAGCTGG
FD535068       --> TCTATAGTCAAGTTTTTCAGACAGTTCTGCACGAGTTTCATCTTAGCTGG
EY937578       --> TCTATAGTCAAGTTTTTCAGACAGTTCTGCACGAGTTTCATCTTAGCTGG
FD533975       --> .........................gCTGCACGAGTTTCATCTTAGCTGG
FD986714       --> ......................................gATCTTAGCTGG

               501    -    551
UN13092        --> GAGAGACACGAGCTCAGTTGCACTAACGTGGTTCTTTTGGGTTATAACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- GAGAGACACGAGTTCAGTTGCACTTACGTGGTTCTTTTGGGTTATAACTA
FD975636       <-- GAGAGACACGAGCTCAGTTGCACCAACGTGGTTCTTTTGGGTTATAACTA
FD982915       <-- GAGAGACACGAGCTCAGTTGCACTAACGTGGTTCTTTTGGGTTATAACTA
FD530824       <-- ..................................................
FD530014       <-- ..................................................
FD979624       --> GAGAGACACGAGCTCAGTTGCACCAACGTGGTTCTTTTGGGTTATAACTA
FD535068       --> GAGAGACACGAGCTCAGTTGCACTAACGTGGTTCTTTTGGGTTATAACTA
EY937578       --> GAGAGACACGAGTTCAGTTGCACTTACGTGGTTCTTTTGGGTTATAACTA
FD533975       --> GAGAGACACGAGCTCAGTTGCACTAACGTGGTTCTTTTGGGTTATAACTA
FD986714       --> GAGAGACACGAGCTCAGTTGCACTAACGTGGTTCTTTTGGGTTATAACTA

               551    -    601
UN13092        --> GACATCCAGAAGTTGAAAACAGAATCATCAGCGAGGTCAGAGAGATCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- GACACCCTGAAGTTGAAAACAAAATCATCAGCGAGGTCAGAGAGATCTTG
FD975636       <-- GACATCCAGAAGTTGAAAACAGAATCATCAGCGAGGTCAGAGAGATCTTG
FD982915       <-- GACATCCAGAAGTTGAAAACAGAATCATCAGCGAGGTCAGAGAGATCTTG
FD530824       <-- ............................................ATCTTG
FD530014       <-- ..................................................
FD979624       --> GACATCCAGAAGTTGAAAACAGAATCATCAGCGAGGTCAGAGAGATCTTG
FD535068       --> GACATCCAGAAGTTGAAAACAGAATCATCAGCGAGGTCAGAGAGATCTTG
EY937578       --> GACACCCTGAAGTTGAAAACAAAATCATCAGCGAGGTCAGAGAGATCTTG
FD533975       --> GACATCCAGAAGTTGAAAACAGAATCATCAGCGAGGTCAGAGAGATCTTG
FD986714       --> GACATCCAGAAGTTGAAAACAGAATCATCAGCGAGGTCAGAGAGATCTTG

               601    -    651
UN13092        --> AGACAGAGAGGAGGAGATCGTCAAACTAGTCTCTTCACGGTCAAGGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- AGACAGAGAGGAGGAGATCATCAGACTAGTCTCTTCACGGTCAAGGAACT  Raphanus sativus cv Early Scarlet Globe
FD975636       <-- AGACAGAGAGGAGGAGATCGTCAAACTAGTCTCTTCACGGTCAAGGAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982915       <-- AGACAGAGAGGAGGAGATCATCAGACTAGTCTCTTCACGGTCAAGGAACT  Raphanus raphanistrum subsp. landra
FD530824       <-- AGACAGAGAGGAGGAGATCGTCAAACTAGTCTCTTCACGGTCAAGGAACT  Raphanus raphanistrum subsp. maritimus
FD530014       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD979624       --> AGACAGAGAGGAGGAGATCGTCAAACTAGTCTCTTCACGG..........  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535068       --> AGACAGAGAGGAGGAGATCGTCAAACTAGTCTCTTCACGGTCAAGGAACT  Raphanus raphanistrum subsp. maritimus
EY937578       --> AGACAGAGAGGAGGAGATCATCAGACTAGTCTCTTCACGGTCAAGGAACT  Raphanus sativus cv Early Scarlet Globe
FD533975       --> AGACAGAGAGGAGGAGATCGTCAAACTAGTCTCTTCACGGTCAAGGAACT  Raphanus raphanistrum subsp. maritimus
FD986714       --> AGACAGAGAGGAGGAGATCATCAGACTAGTCTCTTCACGGTCAAGGAACT  Raphanus raphanistrum subsp. landra

               651    -    701
UN13092        --> AAACGACATGGTGTATCTACAAGCAGCACTCTCAGAGACCATGAGACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- AAACGACATGGTGTATCTACAAGCAGCACTCTCAGAAACCATGAGACTTT  Raphanus sativus cv Early Scarlet Globe
FD975636       <-- AAACGACATGGTGTATCTACAAGCAGCACTCTCAGAGACCATGAGACTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982915       <-- AAACGACATGGTGTATCTACAAGCAGCACTATCAGAAACCATGAGACTTT  Raphanus raphanistrum subsp. landra
FD530824       <-- AAACGACATGGTGTATCTACAAGCAGCACTCTCAGAGACCATGAGACTTT  Raphanus raphanistrum subsp. maritimus
FD530014       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD979624       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535068       --> AAACGACATGGTGTATCTACAAGCAGCACTCTCAGAGACCATGAGACTTT  Raphanus raphanistrum subsp. maritimus
EY937578       --> AAACGACATGGTGTATCTACAAGCAGCACTCTCAGAAACCATGAGACTTT  Raphanus sativus cv Early Scarlet Globe
FD533975       --> AAACGACATGGTGTATCTACAAGCAGCACTCTCAGAGACCATGAGATTTT  Raphanus raphanistrum subsp. maritimus
FD986714       --> AAACGACATGGTGTATCTACAAGCAGCACTATCAGAAACCATGAGACTTT  Raphanus raphanistrum subsp. landra

               701    -    751
UN13092        --> ACCCTCCAATCCCAATGGAGATGAAACAAGCCATTGAAGACGATGTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- ACCCTCCAATACCAATGGAGATGAAACAAGCCATTGAAGACGATGTGTTC  Raphanus sativus cv Early Scarlet Globe
FD975636       <-- ACCCTCCAATCCCAATGGAGATGAAACAAGCCATTGAAGACGATGTGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982915       <-- ACCCTCCAATACCAATGGAGATGAAACAAGCCATTGAAGACGATGTGTTC  Raphanus raphanistrum subsp. landra
FD530824       <-- ACCCTCCAATCCCAATGGAGATGAAACAAGCCATTGAAGACGATGTGTTC  Raphanus raphanistrum subsp. maritimus
FD530014       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD979624       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535068       --> ACCCTCCAATCCCAATGGAGATGAAACAAGCCATTGAAGACGATGTGTTC  Raphanus raphanistrum subsp. maritimus
EY937578       --> ACCCTCCAATACCAATGGAGATGAAACAAGCCATTGAAGACGATGTGTTC  Raphanus sativus cv Early Scarlet Globe
FD533975       --> ACCCTCCAATCCCAATGGAGATGAAACAAGCCATTGAAGACGATGTGTTC  Raphanus raphanistrum subsp. maritimus
FD986714       --> ACCCTCCAATACCAATGGAGATGAAACAAGCCATTGAAGACGATGTGTTC  Raphanus raphanistrum subsp. landra

               751    -    801
UN13092        --> CCTGATGGGACGTTTCTAAGTAAAGGTTCAAGGGTTTACTTTGCGATATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- CCTGATGGGACGTTTCTAAGTAAAGGTTCAAGGGTTTACTTTTCGATATA
FD975636       <-- CCTGATGGGACGTTTCTAAGTAAAGGTTCAAGGGTTTACTTTGCGATATA
FD982915       <-- CCTGATGGGACGTTTCTAAGTAAAGGTTCAAGGGTTTACTTTGCGATATA
FD530824       <-- CCTGATGGGACGTTTCTAAGTAAAGGTTCAAGGGTTTACTTTGCGATATA
FD530014       <-- ..................................................
FD979624       --> ..................................................
FD535068       --> CCTGATGGGACGTTTCTAAGTAAAGGTTCAAGGGTTTACTTTGCGATATA
EY937578       --> CCTGATGGGACGTTTCTAAGTAAAGGTTCAAGGGTTTACTTTTCGATATA
FD533975       --> CCTGATGGGACGTTTCTAAGTAAAGGTTCAAGGGTTTACTTTGCGATATA
FD986714       --> CCTGATGGGACGTTTCTAAGTAAAGGTTCAAGGGTTTACTTTGCGATATA

               801    -    851
UN13092        --> TGCCATGGG-AAGGATGGAATCAATCTGGGGGAAAGACTGTGAGGTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- TGCCATGGG-AAGGATGGAATCAATCTGGGGGAAAGACTGTGAGGTGTTT
FD975636       <-- TGCCATGGG-AAGGATGGAATCAATCTGGGGGAAAGACTGTGAGGTGTTT
FD982915       <-- TGCCATGGG-AAGGATGGAAACAATCTGGGGGAAAGACTGTGAGGTGTTT
FD530824       <-- TGCCATGGG-AAGGATGGAATCAATCTGGGGGAAAGACTGTGAGGTGTTT
FD530014       <-- ..................................................
FD979624       --> ..................................................
FD535068       --> TGCCATGGGGAAGGATGGAATCAATCTGGGGGAAAGACTGTGAGGTGTTT
EY937578       --> TGCCATGGG-AAGGATGGAATCAATCTGGGGGAAAGACTGTGAGGTGTTT
FD533975       --> TGCCATGGG-AAGGATGGAATCAATCTGGGGGAAAGACTGTGAGGTGTTT
FD986714       --> TGCCATGGG-AAGGATGGAAACAATCTGGGGGAAAGACTGTGAGGTGTTT

               851    -    901
UN13092        --> AGACCAGAGAGATGGATACAAGCAGGGAGTTTCGTGAGCGACGACCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- AGACCAGATAGATGGATACAAGCAGGGAGTTTCGTGAGCGACTACCAGTT
FD975636       <-- AGACCAGAGAGATGGATACAAGCAGGGAGTTTCGTGAGCGACGACCAGTT
FD982915       <-- AGACCAGAGAGATGGATACAAGCAGGGAGTTTCGTGAGCGACGACCAGTT
FD530824       <-- AGACCAGAGAGATGGATACAAGCAGGGAGTTTCGTGAGCGACGACCAGTT
FD530014       <-- .............................................CAGTT
FD979624       --> ..................................................
FD535068       --> AGACCAGAGAGATGGATACAAGCAGGGAGTTTCGTGAGCGACGACCAGTT
EY937578       --> AGACCAGATAGATGGATACAAGCAGGGAGTTTCGTGAGCGACTACCAGTT
FD533975       --> AGACCAGAGAGATGGATACAAGCAGGGAGTTTCGTGAGCGACGACCAGTT
FD986714       --> AGACCAGAGAGATGGATACAAGCAGGGAGTTTCGTGAGCGACGACCAGTT

               901    -    951
UN13092        --> TAAATACGTTGTGTTTAATGCTGGGCCAAGGCTTTGTTTAGGGAAGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- TAAATACGTTGTGTTTAATGCTGGGCCAAGGCTTTGTTTAGGAAAGACAT
FD975636       <-- TAAATACGTTGTGTTTAATGCTGGGCCAAGGCTTTGTTTAGGGAAGACAT
FD982915       <-- TAAATACGTTGTGTTTAATGCTGGGCCAAGGCTTTGTTTAGGGAAGACAT
FD530824       <-- TAAATACGTTGTGTTTAATGCTGGGCCAAGGCTTTGTTTAGGGAAGACAT
FD530014       <-- TAAATACGTTGTGTTTAATGCTGGGCCAAGGCTTTGTTTAGGGAAGACAT
FD979624       --> ..................................................
FD535068       --> TAAATACGTTGTGTTTAATGCTGGGCCAAG-CTTTGTTTAGGGAAGACAT
EY937578       --> TAAATACGTTGTGTTTAATGCTGGGCCAAGctt.................
FD533975       --> TAAATACGTTGTGTTTAATGCTGGGCCAAGGCTTTGTTTAGGGAAGACAT
FD986714       --> TAAATACGTTGTGTTTAATGCTGGGCCAAGGCTTTGTTTAGGGAAGACAT

               951    -   1001
UN13092        --> TTGCTTACTTGCAGATGAAGACTGTGGCTGCTTCAGTCTTGCTGAGGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- TTGCTTACTTGCAGATGAAGACAGTGGCTGCTTCAGTCTTGTTGAGGTAC  Raphanus sativus cv Early Scarlet Globe
FD975636       <-- TTGCTTACTTGCAGATGAAGACTGTGGCTGCTTCAGTCTTGCTGAGGTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982915       <-- TTGCTTACTTGCAGATGAAGACAGTGGCTGCTTCAGTCTTGTTGAGGTAC  Raphanus raphanistrum subsp. landra
FD530824       <-- TTGCTTACTTGCAGATGAAGACTGTGGCTGCTTCAGTCTTGCTGAGGTAC  Raphanus raphanistrum subsp. maritimus
FD530014       <-- TTGCTTACTTGCAGATGAAGACTGTGGCTGCTTCAGTCTTGCTGAGGTAC  Raphanus raphanistrum subsp. maritimus
FD979624       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535068       --> TTGCTTACTTGCAGATGAAGACTGTGGCTGCTTCAGTCTTGCTG......  Raphanus raphanistrum subsp. maritimus
EY937578       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD533975       --> TTGCTTACTTGCAGATGAAGACTGTGGCTGCTTCAGTCTTGCTGAGGTAC  Raphanus raphanistrum subsp. maritimus
FD986714       --> TTGCTTACTTGCAGATGAAGACAGTGGCTGCTTCAGTCTTGTTGAGGTAC  Raphanus raphanistrum subsp. landra

               1001   -   1051
UN13092        --> TCGGTCAAGGTTGATCCAGATCATGTTGTTGTCCCTAGAGTAACGACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- TCGGTCAAGGTTGATCCAGATCATGTTGTTGTCCCTAGAGTAACGACAAC
FD975636       <-- TCGGTCAAGGTTGATCCAGATCATGTTGTTGTCCCTAGAGTAACGACAAC
FD982915       <-- TCGGTCAAGGTTGATCCAGATCATGTTGTTGTCCCTAGAGTAACGACAAC
FD530824       <-- TCGGTCAAGGTTGATCCAGATCATGTTGTTGTCCCTAGAGTAACGACAAC
FD530014       <-- TCGGTCAAGGTTGATCCAGATCATGTTGTTGTCCCTAGAGTAACGACAAC
FD979624       --> ..................................................
FD535068       --> ..................................................
EY937578       --> ..................................................
FD533975       --> TCGGTCAAGGTTGATCCAGATCATGTTGTTGTCCCTAGAGTAACGACAAC
FD986714       --> TCGGTCAAGGTTGATCCAGATCATGTTGTTGTCCCTAGAGTAACGACAAC

               1051   -   1101
UN13092        --> TTTGTACATGAAGCATGGTCTTAAGGTGACCATCTCGCCAAGGTCGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- TTTGTACATGAAGCATGGTCTCAAGGTGACCATCTCGCCAAGGTCGCTGG  Raphanus sativus cv Early Scarlet Globe
FD975636       <-- TTTGTACATGAAGCATGGTCTTAAGGTGACCATCTCGCCAAGGTCGCTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982915       <-- TTTGTACATGAAGCATGGTCTCAAGGTGACCATCTCGCCAAGGTCGCTGG  Raphanus raphanistrum subsp. landra
FD530824       <-- TTTGTACATGAAGCATGGTCTTAAGGTGACCATCTCGCCAAGGTCGCTGG  Raphanus raphanistrum subsp. maritimus
FD530014       <-- TTTGTACATGAAGCATGGTCTTAAGGTGACCATCTCGCCAAGGTCGCTGG  Raphanus raphanistrum subsp. maritimus
FD979624       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535068       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY937578       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD533975       --> TTTGTACATGAAGCATGGTCTTAAGGTGACCATCTCGCCAAGGTCGCTGG  Raphanus raphanistrum subsp. maritimus
FD986714       --> TTTGTACATGAAGCATGGTCTCAAGGTGACCATCTCGCCAAGGTCGCTGG  Raphanus raphanistrum subsp. landra

               1101   -   1151
UN13092        --> AGGAGAAGACACAGGTTCAATTAGAGAAACGTTAGAAACGGGCTATATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- AGGAGAAGACACAGGTTCAATTAGAGAAACGTTAGAAACGGGCTATATCA
FD975636       <-- AGGAGAAGACACAGGTTCAATTAGAGAAACGTTAGAAACGGGCTATATCA
FD982915       <-- AGGAGAAGACACAGGTTCAATTAGAGAAACGTTAGAAACGGGCTATATCA
FD530824       <-- AGGAGAAGACACAGGTTCAATTAGAGAAACGTTAGAAACGGGCTATATCA
FD530014       <-- AGGAGAAGACACAGGTTCAATTAGAGAAACGTTAGAAACGGGCTATATCA
FD979624       --> ..................................................
FD535068       --> ..................................................
EY937578       --> ..................................................
FD533975       --> AGGAGAAGACACAGGTTCAATTAGAGAAACGTTAGAAACGGGCTATATCA
FD986714       --> AGGAGAAGACACAGGTTCAATTAGAGAAACGTTAGAAACGGGCTATATCA

               1151   -   1201
UN13092        --> TGGAGAAGTTACT--AGAG--TCATGTTCCCAATATTATATATTTTCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- TGGAGAAGTTACTTGAGAG--TCATGTTCCCAATATCATATATTTTCAAA
FD975636       <-- TGGAGAAGTTACT--AGAG--TCATGTTCCCAATATTATATATTTTCAAA
FD982915       <-- TGGAGAAGTTACT--AGAGAGTCATGTTCCCAATATTATATATTTTCAAA
FD530824       <-- TGGAGAAGTTACT--AGAG--TCATGTTCCCAATATTATATATTTTCAAA
FD530014       <-- TGGAGAAGTTACT--AGAG--TCATGTTCCCAATATTATATATTTTCAAA
FD979624       --> ..................................................
FD535068       --> ..................................................
EY937578       --> ..................................................
FD533975       --> TGGAGAAGTTACT--AGAG--TCATGTTCCCAATATTATATATTTTCAAA
FD986714       --> TGGAGAAGTTACT--AGAGAGTCATGTTCCCA-TATTATATATTTTCAA-

               1201   -   1251
UN13092        --> TTCAATATAATGACTTCATATCCAACTTCACTCAAAATACTTTTGAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- TTCAATATAATGACTTCATATCCAACTTCACTCAAAATACTTT-GAATAA
FD975636       <-- TTCAATATAAT.......................................
FD982915       <-- TTCAATATAATGACTTCATATCCAACTTCACTC.................
FD530824       <-- TTCAATATAATGACTTCATATCCAACTTCACTCAAAATACTTTTGAATAA
FD530014       <-- TTCAATATAATGACTTCATATCCAACTTCACTCAAAATACTTTTGAATAA
FD979624       --> ..................................................
FD535068       --> ..................................................
EY937578       --> ..................................................
FD533975       --> TTCAATATAATGACTTCATATCCAACTTCACTCAAAATACTTTTGAA--A
FD986714       --> TTC-ATATAAT.......................................

               1251   -   1301
UN13092        --> AACAATTTTTCTGTTTAGAGCAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY933855       <-- TGCAATTTTTCTGTTT...........
FD975636       <-- ...........................
FD982915       <-- ...........................
FD530824       <-- AACAATTTTTCTGTTTAagatctc...
FD530014       <-- AACAATTTTTCTGTTTAagagc.....
FD979624       --> ...........................
FD535068       --> ...........................
EY937578       --> ...........................
FD533975       --> AACAATTTTTCTGTTTAGAGCAAAAAA
FD986714       --> ...........................