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Alignment for radish unigene UN13129

               1      -     51
UN13129        --> GGAAGCTCCTGTGCCGCCATCATCGGCCGTGGCAGCTAAAGAAACGACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- ..................................................
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> GGAAGCTCCTGTGCCGCCATCATCGGCCGTGGCAGCTAAAGAAACGACGG
FD540290       --> ..................................................
AB447895       --> ..................................................
EY948629       --> ..................................................
EX896395       --> ..................................................

               51     -    101
UN13129        --> TGGATGACACCCCTCCTGCGGTGGCTAACGGTGTACCACCGCCGTCGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- ..................................................
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> TGGATGACACCCCTCCTGCGGTGGCTAACGGTGTACCACCGCCGTCGTCT
FD540290       --> ..................................................
AB447895       --> ..................................................
EY948629       --> ..................................................
EX896395       --> ..................................................

               101    -    151
UN13129        --> GAAAACGGTGCGGCTAAGAACAGTAAAGATCTGACGTTCTTCGTGAAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- ..................................................
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> GAAAACGGTGCGGCTAAGAACAGTAAAGATCTGACGTTCTTCGTGAAATC
FD540290       --> ..................................................
AB447895       --> ..................................................
EY948629       --> ..................................................
EX896395       --> ..................................................

               151    -    201
UN13129        --> GTTCGGCGTGTTCGATCTCGATGGTCTGCTGAAGGCTTCTGCTGAAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- ..................................................
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> GTTCGGCGTGTTCGATCTCGATGGTCTGCTGAAGGCTTCTGCTGAAGTTC
FD540290       --> ..................................................
AB447895       --> ..................................................
EY948629       --> ..................................................
EX896395       --> ..................................................

               201    -    251
UN13129        --> TTGGTAAAGGAGCGTTTGGATCCTCGTACAAGGCGAGTTTCGAGCATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- ..................................................
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> TTGGTAAAGGAGCGTTTGGATCATCGTACAAGGCGAGTTTCGAGCATGGT
FD540290       --> ....TAAAGGAGCGTTTGGATCCTCGTACAAGGCGAGTTTCGAGCATGGT
AB447895       --> ...........................ACAAGGCGAGTTTCGAGCATGGT
EY948629       --> ..................................................
EX896395       --> ..................................................

               251    -    301
UN13129        --> TTAATTGTGGCTGTGAAACGGTTGAGAGATGTGGTTGTGCCTGAGAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- ..................................................
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> TTAATTGTGGCTGTGAAACGGTTGAGAGATGTGGTTGTGCCTGAGAAAGA
FD540290       --> TTAATTGTGGCTGTGAAACGGTTGAGAGATGTGGTTGTGCCTGAGAAAGA
AB447895       --> TTAATTGTGGCTGTGAAACGGTTGAGAGATGTGGTTGTGCCTGAGAAAGA
EY948629       --> ..............................................gAGA
EX896395       --> ..................................................

               301    -    351
UN13129        --> GTTTAAAGAGAAGTTGCAGGTTCTTGGTTCAATCAGCCATCCCAATCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- ..................................................
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> GTTTAAAGAGAAGTTGCAGGTTCTTGGTTCGATCAGCCATCCCAATCTTG
FD540290       --> GTTTAAAGAGAAGTTGCAGGTTCTTGGTTCAATCAACCATCCCAATCTCG
AB447895       --> GTTTAAAGAGAAATTACAGGTTCTTGGTTCAATCAGCCATCCCAATCTTG
EY948629       --> GTTTAAAGAGAAATTACAGGTTCTTGGTTCAATCAGCCATCCCAATCTTG
EX896395       --> ..................................................

               351    -    401
UN13129        --> TGGCATTGATCGCTTATTACTTCAGCCGCGACGAGAAGCTCGTTGTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- ..................................................
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> TGGCATTGATCGCTTATTACTTCAGCCGCGACGAGAAGCTAGTTGTCTTC
FD540290       --> TGACGTTGATCGCTTATTACTTCAGCCGCGACGAGAAGCTCGTTGTCTTC
AB447895       --> TGGCATTGATCGCTTATTACTTCAGCCGCGACGAGAAGCTCGTTGTTTTC
EY948629       --> TGGCATTGATCGCTTATAACTTCAGCCGCGACGAGAAGCTCGTTGTTTTC
EX896395       --> .............TTATTACTTCAGCCGCGACGAGAAGCTCGTTGTTTTC

               401    -    451
UN13129        --> GAGTACATGCCTAGAGGAAGCTTGTCTGCTCTCTTACACGGGAATAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- ..................................................
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> GAGTACATGCCTAGAGGAAGCTTGTCTGCTCTCTTACACGGGAACAAAGG
FD540290       --> GAGTACATGCCTAGAGGAAGCTTGTCTGCTCTCTTACACGGGAACAAAGG
AB447895       --> GAGT..............................................
EY948629       --> GAGTACATGCCTAGAGGAAGCTTGTCTGCTCTCTTACACGGGAATAAAGG
EX896395       --> GAGTACATGCCTAGAGGAAGCTTGTCTGCTCTCTTACACGGGAATAAAGG

               451    -    501
UN13129        --> AAGTGGTAGAAGTCCATTGAGTTGGGAAACAAGAGCGAGTATAGCTCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ......TAGAAGTCCATTGAGTTGGGAAACAAGAGCGAGTATAGCTATAG
EY944293       <-- ..................................................
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> AAGTGGTAGAAGTCCACTGAGTTGGGAAACAAGAGCGAGTATAGCTCTAG
FD540290       --> AAGTGGTAGAAGTCCATTGAGTTGGGAAACAAGAGCGAGTATAGCTATAG
AB447895       --> ..................................................
EY948629       --> AAGTGGTAGAAGTCCATTGAGTTGGGAAACAAGAGCGAGTATAGCTCTAG
EX896395       --> AAGTGGTAGAAGTCCATTGAGTTGGGAAACAAGAGCGAGTATAGCTCTAG

               501    -    551
UN13129        --> GAGCAGCGAGAGCCATTAGTTACCTTCATTCACGTGACGCGACAACATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- GAGCAGCGAGAGCCATTAGTTACCTTCATTCACGTGACGCGACGACATCT
EY944293       <-- ..........................CATTCACGTGACGCGACAACATCT
EX900333       <-- ..................................................
EY895755       <-- ..................................................
EV545478       <-- ..................................................
EY900138       --> GAGCAGCGAGAGCCATTAGTTACCTTCATTCACGTGACGCGACAACATCT
FD540290       --> GAGCAGCGAGAGCCATTAGTTACCTTCATTCACGTGACGCGACGACATCT
AB447895       --> ..................................................
EY948629       --> GAGCAGCGAGAGCCATTAGTTACCTTCATTCACGTGACGCGACAACATCT
EX896395       --> GAGCAGCGAGAGCCATTAGTTACCTTCATTCACGTGACGCGACAACATCT

               551    -    601
UN13129        --> CATGGCAACATTAAATCTTCTAACATTCTCTTGTCTGAATCTTTCGAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- CATGGCAACATTAAATCTTCTAACATTCTCTTGTCTGAATCTTATGAGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944293       <-- CATGGCAACATTAAATCTTCTAACATTCTCTTGTCTGAATCTTTCGAGGC  Raphanus sativus cv Rat-Tail Radish #3870
EX900333       <-- ..............................TTGTCTGAATCTTTCGAGGC  Raphanus sativus cv Early Scarlet Globe
EY895755       <-- ......................................atcatatGAGGC  Raphanus raphanistrum subsp. maritimus
EV545478       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900138       --> CATGGCAACATTAAGTCTAGTAACGTTCTCTTGTCTGAATCATATGAGGC  Raphanus raphanistrum subsp. maritimus
FD540290       --> CATGGCAACATTAAATCTTCTAACATTCTCTTGTCTGAATCTTATGAGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
AB447895       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EY948629       --> CATGGCAACATTAAATCTTCTAACATTCTCTTGTCTGAATCTTTCGAGGC  Raphanus sativus cv Rat-Tail Radish #3870
EX896395       --> CATGGCAACATTAAATCTTCTAACATTCTCTTGTCTGAATCTTTCGAGGC  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN13129        --> TAAGGTCTCTGACTACTGCCTTGCGCCTATGATCAGCCCTACATCTACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- TAAGGTCTCTGACTACTGCCTTGCGCCTATGATCAGCCCTACATCTACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944293       <-- TAAGGTCTCTGACTACTGTCTTGCGCCTATGATCAGCCCTACATCTACAC  Raphanus sativus cv Rat-Tail Radish #3870
EX900333       <-- TAAGGTCTCTGACTACTGTCTTGCGCCTATGATCAGCCCTACATCTACAC  Raphanus sativus cv Early Scarlet Globe
EY895755       <-- TAAGGTCTCTGACTACTGCCTTGCGCCTATGATCAGCCCTACATCTACAC  Raphanus raphanistrum subsp. maritimus
EV545478       <-- .AAGGTTTCTGACTACTGCCTTGCGCCTATGATCAGCCCTACATCTACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900138       --> TAAGGTCTCTGACTACTGCCTTGCGCCTATGATCAGCCCTACATCTACAC  Raphanus raphanistrum subsp. maritimus
FD540290       --> TAAGGTCTCTGACTACTGCCTTGCGCCTATGATCAGCCCTACATCTACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
AB447895       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EY948629       --> TAAGGTCTCTGACTACTGTCTTGCGCCTATGATCAGCCCTACATCTACAC  Raphanus sativus cv Rat-Tail Radish #3870
EX896395       --> TAAGGTCTCTGACTACTGTCTTGCGCCTATGATCAGCCCTACATCTACAC  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN13129        --> CTAACCGTATCGATGGTTACCGTGCTCCTGAAGTAACAGATGCTCGTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- CTAACCGTATCGATGGTTACCGTGCTCCTGAAGTAACAGATGCTCGTAGA
EY944293       <-- CTAACCGTATCGATGGTTACCGTGCTCCTGAAGTAACAGATGCTCGTAGA
EX900333       <-- CTAACCGTATCGATGGTTACCGTGCTCCTGAAGTAACAGATGCTCGTAGA
EY895755       <-- CTAACCGTATTGATGGTTACCGTGCTCCCGAAGTAACAGATGCTCGTAGA
EV545478       <-- CTACCCGTATTGATGGTTACCGTGCTCCCGAAGTAACAGATGCTCGTAGA
EY900138       --> CTAACCGTATTGATGGTTACCGTGCTCCCGAAGTAACAGATGCTCGTAGA
FD540290       --> CTAACCGTATCGATGGTTACCGTGCTCCTGAAGTAACAGATGCTCGTAGA
AB447895       --> ..................................................
EY948629       --> CTAACCGTATCGATGGTTACCGTGCTCCTGAAGTAACAGATGCTCGTAGA
EX896395       --> CTAACCGTATCGATGGTTACCGTGCTCCTGAAGTAACAGATGCTCGTAGA

               701    -    751
UN13129        --> ATCTCCCAGAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ATCTCCCAGAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944293       <-- ATCTCCCAAAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATT  Raphanus sativus cv Rat-Tail Radish #3870
EX900333       <-- ATCTCCCAAAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATT  Raphanus sativus cv Early Scarlet Globe
EY895755       <-- ATCTCCCAGAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATT  Raphanus raphanistrum subsp. maritimus
EV545478       <-- ATCTCCCAGAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900138       --> ATCTCCCA..........................................  Raphanus raphanistrum subsp. maritimus
FD540290       --> ATCTCCCAGAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
AB447895       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EY948629       --> ATCTCCCAAAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATT  Raphanus sativus cv Rat-Tail Radish #3870
EX896395       --> ATCTCCCAAAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATT  Raphanus sativus cv Early Scarlet Globe

               751    -    801
UN13129        --> ACTCACAGGGAAATCTCCAACGCACCAGCAGTTAAACGAAGAAGGAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ACTCACAGGGAAATCTCCAACGCACCAGCAGTTAAACGAAGAAGGAGTTG
EY944293       <-- ACTCACAGGGAAATCTCCAACGCACCAGCAGTTAAACGAAGAAGGAGTTG
EX900333       <-- ACTCACAGGGAAATCTCCAACGCACCAGCAGTTAAACGAAGAAGGAGTTG
EY895755       <-- ACTCACAGGGAAATCTCCAACGCACCAGCAGTTAAACGAAGAAGGAGTTG
EV545478       <-- ACTCACAGGGAAATCTCCAACGCACCAGCAGTTAAACGAAGAAGGAGTTG
EY900138       --> ..................................................
FD540290       --> ACTCACAGGGAAATCTCCAACGCACCAGCAGTTAAACGAAGAAGGAGTTG
AB447895       --> ..................................................
EY948629       --> ACTCACAGGGAAATCTCCAACGCACCAGCAGTTAAACGAAGAAGGAGTTG
EX896395       --> ACTCACAGGGAAATCTCCAACGCACCAGCAGTTAAACGAAGAAGGAGTTG

               801    -    851
UN13129        --> ATTTGCCGAGATGGGTTTCATCTATCACTGAACAACAATCACCTTCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ATTTGCCGAGATGGGTTTCATCTATCACTGAACAACAATCACCTTCAGAT
EY944293       <-- ATTTGCCGAGATGGGTTTCATCTATCACTGAACAACAATCACCTTCAGAT
EX900333       <-- ATTTGCCGAGATGGGTTTCATCTATCACTGAACAACAATCACCTTCAGAT
EY895755       <-- ATTTGCCGAGATGGGTTTCATCTATCACTGAACAACAATCACCTTCAGAT
EV545478       <-- ATTTGCCGAGATGGGTTTCATCTATCACTGAACAACAATCACCTTCAGAT
EY900138       --> ..................................................
FD540290       --> ATTTGCCGAGATGGGTTTCATCTATCACTGAACAACAATCACCTTCAGAT
AB447895       --> ..................................................
EY948629       --> ATTTGCCGAGATGGGTTTCATCTATCACTGAACAACAATCACCTTCAGAT
EX896395       --> ATTTGCCGAGATGGGTTTCATCTATCACTGAACAACAATCACCTTCAGAT

               851    -    901
UN13129        --> GTGTTTGATCCAGAGCTAACTAGGTATCAAGCTGAGGGTAATGAGAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- GTGTTTGATCCAGAGCTAACTAGGTATCAAGCTGAGGGTAATGAGAACAT
EY944293       <-- GTGTTTGATCCAGAGCTAACTAGGTATCAAGCTGAGGGTAATGAGAACAT
EX900333       <-- GTGTTTGATCCAGAGCTAACTAGGTATCGAGCTGAGGGTAATGAGAACAT
EY895755       <-- GTGTTTGATCCAGAGCTAACTAGGTATCAAGCTGAGGGTAATGAGAACAT
EV545478       <-- GTGTTTGATCCAGAGCTAACTAGGTATCAAGCTGAGGGTAATGAGAACAT
EY900138       --> ..................................................
FD540290       --> GTGTTTGATCCAGAGC..................................
AB447895       --> ..................................................
EY948629       --> GTGTTTGATCCAGAGCTAACTAGGTATCAAGCTGAGGGTAATGAGAACAT
EX896395       --> GTGTTT............................................

               901    -    951
UN13129        --> GATCAGGCTTTTGAAGATCGGTATAAGTTGTACTGCTCAGTATCCAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- GATCAGGCTTTTGAAGATCGGTATAAGTTGTACTGCTCATTATCCAGATA
EY944293       <-- GATCAGGCTTTTGAAGATCGGTATAAGCTGTACTGCTCAGTATCCAGATA
EX900333       <-- GATCAGGCTTTTGAAGATCGGTATAAGCTGTACTGCTCAGTATCCAGATA
EY895755       <-- GATCAGGCTTTTGAAGATTGGTATAAGTTGTACTGCTCAGTATCCAGATA
EV545478       <-- GATCAGGCTTTTGAAGATTGGTATAAGTTGTACTGCTCAGTATCCAGATA
EY900138       --> ..................................................
FD540290       --> ..................................................
AB447895       --> ..................................................
EY948629       --> GATCAGGCTTTTGAAGATCGGTATAAGCTGTACTGCTCAGTATCCAGATA
EX896395       --> ..................................................

               951    -   1001
UN13129        --> GTCGTCCGTCTATGGCTGAAGTCACCAGGCTCATTGAGGAGGTCTCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- GTCGTCCGTCCATGGCTGAAGTCACCAGGCTCATTGAGGAGGTCTCTCGT
EY944293       <-- GTCGTCCGTCTATGCCTGAAGTCACCAGGCTCATTGAGGAGGTCTCTCGT
EX900333       <-- GTCGTCCGTCTATGCCTGAAGTCACCAGGCTCATTGAGGAGGTCTCTCGT
EY895755       <-- GTCGTCCGTCCATGGCGGAAGTCACCAGGCTCATTGAGGAGGTCTCTCGT
EV545478       <-- GTCGTCCGTCCATGGCGGAAGTCACCAGGCTCATTGAGGAGGTCTCTCGT
EY900138       --> ..................................................
FD540290       --> ..................................................
AB447895       --> ..................................................
EY948629       --> GTCGTCCGTCTATGCCTGAAGTCACCAGGCTCATT...............
EX896395       --> ..................................................

               1001   -   1051
UN13129        --> TCATCTGGTTCACAAGGTCCTTTGTCTGGTTGATTCTTTTCTTCTTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- TCATCTGGTTCACAAGGTCCTTTGTCTGGTTGATTCTTTTCTTCTTCTTT
EY944293       <-- TCATCTGGTTCACAAGGTCCTTTGTCTGGTTGATTCTTTTCTTCTTCTTT
EX900333       <-- TCATTTGGTTCACAAGGTCCTTTGTCTGGTTGATTCTTTTCTTCTTCTTT
EY895755       <-- TCATCTGGTCCACAAGGTCCTTTGTCTGGTTGATTCTTTTCTTCTTCCTT
EV545478       <-- TCATCTGGTTCACAAGGTCCTTTGTCTGGTTGATTCTTTTCTTCTTCTTT
EY900138       --> ..................................................
FD540290       --> ..................................................
AB447895       --> ..................................................
EY948629       --> ..................................................
EX896395       --> ..................................................

               1051   -   1101
UN13129        --> T-CAATGTGGGGTCTAAATTGATCGATTTCAAAATTGTTTGGTCTGAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- T-CAGTGTGGGGCCTAAATTGAT...........................
EY944293       <-- TTCAATGTGGGGTCTAAATTGATCGATTTCAAAATTGTTTGGTCTAAATT
EX900333       <-- TTCAATGTGGGGTCTAAATTGATCGATTTCAAAATTGTTTGGTCTAAATT
EY895755       <-- T-CAATGTGGGGTCTAAATTGATCGATTTCAAAATTGTTTGGTCTGAATT
EV545478       <-- T-CAATGTGGGGTCTAAATTGATCGATTTCAAAATTGTTTGGTCTGAATT
EY900138       --> ..................................................
FD540290       --> ..................................................
AB447895       --> ..................................................
EY948629       --> ..................................................
EX896395       --> ..................................................

               1101   -   1151
UN13129        --> TGAATTTGTTTTATAGTTTGTTCGGTGATTCTTGAGCTCAGTTGTGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- TGAATTTGTTTTATAGTTTGTTCGGTGATTCTTGAGCTCAGTTGTGAAAT
EX900333       <-- TGAATTTGTTTTATAGTTTGTTCGGTGATTCTTGAGCTCAGTTGTGAAAT
EY895755       <-- TGAATTTGTTTAATAGTTTGTTCGGTGATTCTTGAGCTCAGTTGTGAAAT
EV545478       <-- TGAATTTGTTTAATAGTTTGTTCGGTGATTCTTGAGCTCAGTTGTGAAAT
EY900138       --> ..................................................
FD540290       --> ..................................................
AB447895       --> ..................................................
EY948629       --> ..................................................
EX896395       --> ..................................................

               1151   -   1201
UN13129        --> ACGTTGAAGATTTTTTTTTTGCTTTTTAGTGTTGAGTTTATCAATTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ..................................................
EY944293       <-- ACGTTGAAGATTTTTTTTTTGCTTTTTAGTGTTGAGTTTATCAATTGTTG
EX900333       <-- ACGTTGAAGATTTTTTTTTTGCTTTTTAGTGTTGAGTTTATCAATTGTTG
EY895755       <-- ACATTGAAGATTTTTTTTTTGCTTTTTAGTGTTGAGTTTATCAATTGTTG
EV545478       <-- ACATTGAAGATTTTTTTTTTGCTTTTTAGTGTTGAGTTTATCAATTGTTG
EY900138       --> ..................................................
FD540290       --> ..................................................
AB447895       --> ..................................................
EY948629       --> ..................................................
EX896395       --> ..................................................

               1201   -   1251
UN13129        --> AAAGATATCATTGTTTGTGGAATGAAAAAAAAGTTGTCTCATTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536820       <-- ...............................................
EY944293       <-- AAAGATATCATTGTTTGTGGAATGAAAAAAAAGTTGTCTCAT.....
EX900333       <-- AAAGATATCATTGTTTGTGGAATGAAAAAAAAGTTGTCTCg......
EY895755       <-- AAAGATATCATTGTTTGTGGAATGAAAAAAAAGTTGTCTCATTTTCC
EV545478       <-- AAAGATATCATTGTTTGTGGAATGAAAAAAAAGTTGTCac.......
EY900138       --> ...............................................
FD540290       --> ...............................................
AB447895       --> ...............................................
EY948629       --> ...............................................
EX896395       --> ...............................................