RadishBase

| | | |
Alignment for radish unigene UN13141

               1      -     51
UN13141        --> AAAATCGAACGGCTAAGCTGCCCTCTTAACACTTTCGAGTATGATTATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> AAAATCGAACGGCTAAGCTGCCCTCTTAACACTTTCGAGTATGATTATAA
FD945555       --> ..................................................
EY935142       --> ..................................................

               51     -    101
UN13141        --> CCCATCATTTATTACATAAACCACATGTATTTCCAATTATACCATGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> CCCATCATTTATTACATAAACCACATGTATTTCCAATTATACCATGGTGT
FD945555       --> ..................................................
EY935142       --> ..................................................

               101    -    151
UN13141        --> TCCCTTTCCCTTCTATATATCTTTCTATTATAAGATACAGCTGTAACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> TCCCTTTCCCTTCTATATATCTTTCTATTATAAGATACAGCTGTAACAAT
FD945555       --> ............................................AACAAT
EY935142       --> ..................................................

               151    -    201
UN13141        --> TTAATACTCACACTTTGATTCCCGTAAACAAAGGGTCACCGCAGAAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> TTAATACTCACACTTTGATTCCCGTAAACAAAGGGTCACCGCAGAAACAT
FD945555       --> TTAATACTCACACTTTGATTCCCGTAAACAAAGGGTCACCGCAGAAACAT
EY935142       --> ..................................................

               201    -    251
UN13141        --> TAATGATTTTGGCATTTTTATAAAACAAAAACTGAAAAATACAGAAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- .....................AAAACAAAAACTGAAAAATACAGAAATCT
EY932276       <-- .......................................TACAGAAATCT
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> TAATGATTTTGGCATTTTT-TAAAACAAAAACTGAAAAATACAGAAATCT
FD945555       --> TAATGATTTTGGCATTTTTATAAAACAAAAACTGAAAAATACAGAAATCT
EY935142       --> ...........GCATTTTTATAAAACAAAAACTGAAAAATACAGAAATCT

               251    -    301
UN13141        --> ATCTTGTAAATAATTGTTTTTTTTT-CTTGTAAAACAGAAAATAGACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ATCTTGTAAATAATTGTTTTTTTTTTCTTGTAAAACAGAAAATAGACATG
EY932276       <-- ATCTTGTAAATAATTGTTTTTTTT--CTTGTAAAACAGAAAATAGACATG
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> ATCTTGTAAATAATTGTTTTTTTTTTCTTGTAAAACAGAAAATAGACATG
FD945555       --> ATCTTGTAAATAATTGTTTTTTTTT-CTTGTAAAACAGAAAATAGACATG
EY935142       --> ATCTTGTAAATAATTGTTTTTTTTT-CTTGTAAAACAGAAAATAGACATG

               301    -    351
UN13141        --> TGATGATAATGAAGGG-----AGAGAG----AGAGAGATTATTAAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- TGACGATAATGAAGGGGAGAGAGAGAG----AGAGAGATTATTAAGAGGA
EY932276       <-- TGATGATCATGAAGGG----GAGAGAGTGAGAGAGAGATTATTAAGAGGA
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> TGACGATAATGAAGGGGAGAGAGAGAG----AGAGAGATTATTAAGAGGA
FD945555       --> TGATGATAATGAAGGG----GAGAGAG----AGAGAGATTATTAAGAGGA
EY935142       --> TGATGATAATGAAGGG------GAGAG----AGAGAGATTATTAAGAGGA

               351    -    401
UN13141        --> TTCGTCGGCGCGAGAGTTTTCCTTTTTCACCCTCGGCTGTATCCCATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- TTCGTCGGCGCGAGAGCTTTCCTTTTTCACCCTCGGCTGTATCCCATAAT
EY932276       <-- TTCGTCGGCGCGAGAGTTTTCCTTTTTCACCCTCGGCTGTATCCCATAAT
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> TTCGTCGGCGCGAGAGCTTTCCTTTTTCACCCTCGGCTGTATCCCATAAT
FD945555       --> TTCGTCGGCGCGAGAGTTTTCCTTTTTCACCCTCGGCTGTATCCCATAAT
EY935142       --> TTCGTCGGCGCGAGAGTTTTCCTTTTTCACCCTCGGCTGTATCCCATAAT

               401    -    451
UN13141        --> AACTAACGTACCACTTGACGAACTTCCTCAACCCCGCTGCGAGATCCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- AACTAACGTACCACTTGACGAACTTCCTCAACCCCGCTGCTAGATCCGTC
EY932276       <-- AACTAACGTACCACTTGACGAACTTCCTCAACCCGGCCGCGAGATCCGTC
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> AACTAACGTACCACTTGACGAACTTCCTCAACCCCGCTGCTAGATCCGTC
FD945555       --> AACTAACGTACCACTTGACGAACTTCCTCAACCCCGCTGCGAGATCCGTC
EY935142       --> AACTAACGTACCACTTGACGAACTTCCTCAACCCCGCTGCGAGATCCGTC

               451    -    501
UN13141        --> GTCGGTTTATACCCGAAATCTCTATACGCTAAGCTCACGTTAGCATGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- GTCGGTTTATACCCGAAATCTCTATACGCTAAGCTCACGTTAGCATGCGT
EY932276       <-- GTCGGTTTATACCCGAAATCTCTATACGCTAAGCTCACGTTAGCATGCGT
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> GTCGGTTTATACCCGAAATCTCTATACGCTAAGCTCACGTTAGCATGCGT
FD945555       --> GTCGGTTTATACCCGAAATCTCTATACGCTAAGCTCACGTTAGCATGCGT
EY935142       --> GTCGGTTTATACCCGAAATCTCTATACGCTAAGCTCACGTTAGCATGCGT

               501    -    551
UN13141        --> GTAAGGCACGTCACCGTTTCTAGGCATTTTGATCAGATGCTTCTTCGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- GTAAGGCACGTCACCGTTTCTAGGCATTTTGATCAGATGCTTCTTCGCTT
EY932276       <-- GTAAGGCACGTCACCGTTTCTAGGCATTTTGATCAGATGCTTCTTCGCTT
FY448215       <-- ......................GGCATTTTGATCAGATGCTTCTTCGCTT
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> GTAAGGCACGTCACCGTTTCTAGGCATTTTGATCAGATGCTTCTTCGCTT
FD945555       --> GTAAGGCACGTCACCGTTCCTAGGCATTTTGATCAGATGCTTCTTCGCTT
EY935142       --> GTAAGGCACGTCACCGTTCCTAGGCATTTTGATCAGATGCTTCTTCGCTT

               551    -    601
UN13141        --> TCGTCCCTAACAACCCTTCCAATATCGAAACCAATCTCCCGACCGGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- TCGTCCCTAACAACCCTTCCAATATCGAAACCAATCTCCCGACCGGAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932276       <-- TCGTCCCTAACAACCCTTCCAATATCGAAACCAATCTCCCGACCGGAACC  Raphanus sativus var. oleiformis
FY448215       <-- TCGTCCCCAACAACCCTTCCAATATCGAAACCAATCTCCCGACCGGAACC  Raphanus sativus cv GSK3-1
FY454393       <-- ..................................................  Raphanus sativus cv GSK3-1
FY432470       <-- ..................................................  Raphanus sativus cv GSK3-1
FY445050       <-- ..................................................  Raphanus sativus cv GSK3-1
FY452980       <-- ..................................................  Raphanus sativus cv GSK3-1
FY433124       <-- ..................................................  Raphanus sativus cv GSK3-1
FY447474       <-- ..................................................  Raphanus sativus cv GSK3-1
FY428832       <-- ..................................................  Raphanus sativus cv GSK3-1
EV543364       --> TCGTCCCTAACAACCCTTCCAATATCGAAACCAATCTCCCGACCGGAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945555       --> TCGTCCCCAACAACCCTTCCAATATCGAAACCAATCTCCCGACCGGAACC  Raphanus sativus cv Early Scarlet Globe
EY935142       --> TCGTCCCCAACAACCCTTCCAATATCGAAACCAATCTCCCGACCGGAACC  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN13141        --> GGAGACGTGTTCCCGAGATTATAAACACGTAACTGAGCCGGTCCTCGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- GGAGATGTGTTCCCGAGATTATAAACACGTAACTGAGCCGGTCCTCGCTT
EY932276       <-- GGAGACGTGTTCCCGAGATTATAAACACGTAACTGAGCCGGTCCTCGCTT
FY448215       <-- GGAGACGTGTTCCCGAGATTATAAACACGTAACTGAGCCGGTCCTCGCTT
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> GGAGATGTGTTCCCGAGATTATAAACACGTAACTGAGCCGGTCCTCGCTT
FD945555       --> GGAGACGTGTTCCCGAGATTATAAACACGTAACTGAGCCGGTCCTCGCTT
EY935142       --> GGAGACGTGTTCCCGAGATTATAAACACGTAACTGAGCCGGTCCTCGCTT

               651    -    701
UN13141        --> CTTTCCCCCGCTTCCGGTGCTCTTCTCCGCCGTGTCTAACGCACCGACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- CTTCCCGCCGCTTCCGGTGCTCTTCTCCGCCGTGTCTAACGCACCGACAC
EY932276       <-- CTTTCCCCCGCTTCCGGTGCTCTTCTCCGCCGTGTCTAACGCACCGACAC
FY448215       <-- CTTTCCCCCGCTTCCGGTACTCTTCTCCGCCGTGTCTAACGCACCGACAC
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> CTTCCCGCCGCTTCCGGTGCTCTTCTCCGCCGTGTCTAACGCACCGACAC
FD945555       --> CTTTCCCCCGCTTCCGGTGCTCTTCTCCGCCGTGTCTAACGCACCGACAC
EY935142       --> CTTTCCCCCGCTTCCGGTGCTCTTCTCCGCCGTGTCTAACGCACCGACAC

               701    -    751
UN13141        --> ACCCTTTGACTATATCGTCGATGTAGGTGAAGTCACGCGCCACTTCTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ATCCTTTGACTATATCGTCGATGTAGGTGAAGTCACGCGCCACTTCTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932276       <-- ACCCTTTGACTATATCGTCGATGTAGGTGAAGTCACGCGCCACTTCTTGG  Raphanus sativus var. oleiformis
FY448215       <-- ATCCCTTGACTATATCGTCGATGTAGGTGAAGTCACGCGCCACTTCTTGG  Raphanus sativus cv GSK3-1
FY454393       <-- ..................................................  Raphanus sativus cv GSK3-1
FY432470       <-- ..................................................  Raphanus sativus cv GSK3-1
FY445050       <-- ..................................................  Raphanus sativus cv GSK3-1
FY452980       <-- ..................................................  Raphanus sativus cv GSK3-1
FY433124       <-- ..................................................  Raphanus sativus cv GSK3-1
FY447474       <-- ..................................................  Raphanus sativus cv GSK3-1
FY428832       <-- ..................................................  Raphanus sativus cv GSK3-1
EV543364       --> ATCCTTTGACTATATCGTCGATGTAGGTGAAGTCACGCGCCACTTCTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945555       --> ACCCTTTGACTATATCGTCGATGTAGGTGAAGTCACGCGCCACTTCTTGG  Raphanus sativus cv Early Scarlet Globe
EY935142       --> ACCCTTTGACTATATCGTCGATGTAGGTGAAGTCACGCGCCACTTCTTGG  Raphanus sativus cv Early Scarlet Globe

               751    -    801
UN13141        --> TTGTCCTGAGTTCTGTAGATGTCGATAGACTTCCCGTGGAGTATGGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- TTGTCCTGAGTTCTGTAGATGTCGATAGACTTCCCGTGGAGTATGGCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY932276       <-- TTGTCCTGAGTTCGGTAGATGTCGATGGACTTCCCGTGGAGTATGGCTTT  Raphanus sativus var. oleiformis
FY448215       <-- TTGTCCTGAGTTCTGTAGATGTCGATGGACTTCCCGTGGAGTATGGCTTT  Raphanus sativus cv GSK3-1
FY454393       <-- ...TCCTGAGTTCTGTAGATGTCGATGGACTTCCCGTGGAGTATGGCTTT  Raphanus sativus cv GSK3-1
FY432470       <-- ..................................................  Raphanus sativus cv GSK3-1
FY445050       <-- ..................................................  Raphanus sativus cv GSK3-1
FY452980       <-- ..................................................  Raphanus sativus cv GSK3-1
FY433124       <-- ..................................................  Raphanus sativus cv GSK3-1
FY447474       <-- ..................................................  Raphanus sativus cv GSK3-1
FY428832       <-- ..................................................  Raphanus sativus cv GSK3-1
EV543364       --> TTGTCCTGAGTTCTGTAGATGTCGATAGACTTCCCGT.............  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945555       --> TTGTCCTGAGTTCTGTAGATGCCGATAGACTTACCGTGGAGTATGGCTTT  Raphanus sativus cv Early Scarlet Globe
EY935142       --> TTGTCCTGAGTTCTGTAGATGTCGATAGACTTACCGTGGAGTATGGCTTT  Raphanus sativus cv Early Scarlet Globe

               801    -    851
UN13141        --> AGTGAAGAAGAAGTAAGCCATGTCCGGTCTTCCCCAAGGACCGTAAACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- AGTAAAGAAGAAGTAAGCCATGTCCGGTCTTCCCCAAGGACCGTAAACCG
EY932276       <-- AGTGAAGAAGAAGTAAGCCATGTCCGGTCTTCCCCAAGGACCGTAAACCG
FY448215       <-- AGTGAAGAAGAAGTAAGCCATGTCCGGTCTTCCCCAAGGACCGTAAACCG
FY454393       <-- AGTGAAGAAGAAGTAAGCCATGTCCGGTCTTCCCCAAGGACCGTAAACCG
FY432470       <-- ..................................................
FY445050       <-- ..................................................
FY452980       <-- ..................................................
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> AGTGAAGAAGAAGTAAGCCATGTCCGGTCTTCCCCATGGACCGTAAACCG
EY935142       --> AGTGAAGAAGAAGTAAGCCATGTCCGGTCTTCCCCATGGACCGTAAACCG

               851    -    901
UN13141        --> TAAAGAACCGGAGTCCGGTTAAAGAAAGACCGTAGATGTGATTGTAAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- TAAAGAACCGGAGTCCGGTTAAAGAAAGACCGTAGATGTGATTGTAAGTG
EY932276       <-- TAAAGAACCGGAGTCCGGTTAAAGAAAGACCGTAGATGTGATTGTAAGTG
FY448215       <-- TAAAGAACCGGAGTCCGGTTAAAGAAAGACCGTAGATGTGATTGTAAGTG
FY454393       <-- TAAAGAACCGGAGTCCGGTTAAAGAAAGACCGTAGATGTGATTGTAAGTG
FY432470       <-- ..........GAGTCCGGTTAAAGAAAGACCGTAGATGTGATGTAAAGTG
FY445050       <-- ............................................TAAGTG
FY452980       <-- ..............................................AGTG
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> TAAAGAACCGGAGTCCGGTTAAAGAAAGACCGTAGATGTGATTGTAGGTG
EY935142       --> TAAAGAACCGGAGTCCGGTTAAAGAAAGACCGTAGATGTGATTGTAg...

               901    -    951
UN13141        --> TGTGCTATCTCCTCCCCTGCTTTCTTCGTCGCGGCGTAAAGACTCGCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- TGTGCTATCTCCTCCCCTGCTTTCTTCGTCGCCGCGTAAAGACTCGCGGG
EY932276       <-- TGTGCTATCTCCTCCCCc................................
FY448215       <-- TGTGCTATCTCCTCCCCTGCTTTCTTCGTCGCGGCGTAAAGACTCGCCGG
FY454393       <-- TGTGCTATCTCCTCCCCTGCTTTCTTCGTCGCGGCGTAAAGACTCGCCGG
FY432470       <-- TGTGCTATCTCCTCCCCTGCTTTCTTCGTCGCGGCGTAAAGACTCGCCGG
FY445050       <-- TGTGCTATCTCCTCCCCTGCTTTCTTCGTCGCGGCGTAAAGACTCGCCGG
FY452980       <-- TGTGCTATCTCCTCCCCTGCTTTCTTCGTCGCGGCGTAAAGACTCGCCGG
FY433124       <-- ..................................................
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> TGTGCTATCTCCTCCCCTGCTTTCTTCGTCGCCGCGTAA-GACTCGCGGG
EY935142       --> ..................................................

               951    -   1001
UN13141        --> CTGATCCGTTCTGTGCTCTTCGGAGAAAGGATTCTCGGTGTTGAGTCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- CTGATCCGTTCTGTGCTCCTCGGAGAAAGGATTCTCGGTGc.........
EY932276       <-- ..................................................
FY448215       <-- CTGATCCGTTCTGTGCTCTTCGGAGAAAGGATTCTCGGTGTTGAGTCCGT
FY454393       <-- CTGATCCGTTCTGTGCTCTTCGGAGAAAGGATTCTCGGTGTTGAGTCCGT
FY432470       <-- CTGATCCGTTCTGTGCTCTTCGGAGAAAGGATTCTCGGTGTTGAGTCCGT
FY445050       <-- CTGATCCGTTCTGTGCTCTTCGGAGAAAGGATTCTCGGTGTTGAGTCCGT
FY452980       <-- CTGATCCGTTCTGTGCTCTTCGGAGAAAGGATTCTCGGTGTTGAGTCCGT
FY433124       <-- ........................GAAAGGATTCTCGGTGTTGAGTCCGT
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> CTGATCCGTTCTGTGCTCTTCGGAGAA-GGATTCTCGGTGTTGAGTCCGT
EY935142       --> ..................................................

               1001   -   1051
UN13141        --> ACACGGAGCTCGACGAAGCCCAGACGATCGCGGGCTGAGGGTTAGCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ACACGGAGCTCGACGAAGCCCAGACGATCGCGGGCTGAGGGTTAGCTGCT
FY454393       <-- ACACGGAGCTCGACGAAGCCCAGACGATCGCGGGCTGAGGGTTAGCTGCT
FY432470       <-- ACACGGAGCTCGACGAAGCCCAGACGATCGCGGGCTGAGGGTTAGCTGCT
FY445050       <-- ACACGGAGCTCGACGAAGCCCAGACGATCGCGGGCTGAGGGTTAGCTGCT
FY452980       <-- ACACGGAGCTCGACGAAGCCCAGACGATCGCGGGCTGAGGGTTAGCTGCT
FY433124       <-- ACACGGAGCTCGACGAAGCCCAGACGATCGCGGGCTGAGGGTTAGCTGCT
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> A-ACAGAGCTTGACGA-GCCCAGACGATCGCGGGCTGAGGatagc.....
EY935142       --> ..................................................

               1051   -   1101
UN13141        --> TTGGCTACTTCGAGGAGGTTGACGAGACCAGCGATGTTGGAGCTGATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- TTGGCTACTTCGAGGAGGTTGACGAGACCAGCGATGTTGGAGCTGATGTA
FY454393       <-- TTGGCTACTTCGAGGAGGTTGACGAGACCAGCGATGTTGGAGCTGATGTA
FY432470       <-- TTGGCTACTTCGAGGAGGTTGACGAGACCAGCGATGTTGGAGCTGATGTA
FY445050       <-- TTGGCTACTTCGAGGAGGTTGACGAGACCAGCGATGTTGGAGCTGATGTA
FY452980       <-- TTGGCTACTTCGAGGAGGTTGACGAGACCAGCGATGTTGGAGCTGATGTA
FY433124       <-- TTGGCTACTTCGAGGAGGTTGACGAGACCAGCGATGTTGGAGCTGATGTA
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1101   -   1151
UN13141        --> AGACTGAGGGTTCTTCATGGCGTAACGAACTCCGGCTTGAGCTGCTAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- AGACTGAGGGTTCTTCATGGCGTAACGAACTCCGGCTTGAGCTGCTAAGT
FY454393       <-- AGACTGAGGGTTCTTCATGGCGTAACGAACTCCGGCTTGAGCTGCTAAGT
FY432470       <-- AGACTGAGGGTTCTTCATGGCGTAACGAACTCCGGCTTGAGCTGCTAAGT
FY445050       <-- AGACTGAGGGTTCTTCATGGCGTAACGAACTCCGGCTTGAGCTGCTAAGT
FY452980       <-- AGACTGAGGGTTCTTCATGGCGTAACGAACTCCGGCTTGAGCTGCTAAGT
FY433124       <-- AGACTGAGGGTTCTTCATGGCGTAACGAACTCCGGCTTGAGCTGCTAAGT
FY447474       <-- ..................................................
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1151   -   1201
UN13141        --> GGAGGACGTGAGTGAATGGGACGATGTCGAAGAGCTTACGCAGGAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- GGAGGACGTGAGTGAATGGGACGATGTCGAAGAGCTTACGCAGGAGAGGA
FY454393       <-- GGAGGACGTGAGTGAATGGGACGATGTCGAAGAGCTTACGCAGGAGAGGA
FY432470       <-- GGAGGACGTGAGTGAATGGGACGATGTCGAAGAGCTTACGCAGGAGAGGA
FY445050       <-- GGAGGACGTGAGTGAATGGGACGATGTCGAAGAGCTTACGCAGGAGAGGA
FY452980       <-- GGAGGACGTGAGTGAATGGGACGATGTCGAAGAGCTTACGCAGGAGAGGA
FY433124       <-- GGAGGACGTGAGTGAATGGGACGATGTCGAAGAGCTTACGCAGGAGAGGA
FY447474       <-- ..............AATGGGACGATGTCGAAGAGCTTACGCAGGAGAGGA
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1201   -   1251
UN13141        --> CCGTCGTTGAGATCTCCTTGGACGATGAACACTTGGTTCTTCTCTAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- CCGTCGTTGAGATCTCCTTGGACGATGAACACTTGGTTCTTCTCTAGGAG
FY454393       <-- CCGTCGTTGAGATCTCCTTGGACGATGAACACTTGGTTCTTCTCTAGGAG
FY432470       <-- CCGTCGTTGAGATCTCCTTGGACGATGAACACTTGGTTCTTCTCTAGGAG
FY445050       <-- CCGTCGTTGAGATCTCCTTGGACGATGAACACTTGGTTCTTCTCTAGGAG
FY452980       <-- CCGTCGTTGAGATCTCCTTGGACGATGAACACTTGGTTCTTCTCTAGGAG
FY433124       <-- CCGTCGTTGAGATCTCCTTGGACGATGAACACTTGGTTCTTCTCTAGGAG
FY447474       <-- CCGTCGTTGAGATCTCCTTGGACGATGAACACTTGGTTCTTCTCTAGGAG
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1251   -   1301
UN13141        --> CTGTTGTCTCGCTCTTTTGAGCGATGGATCGTAGTAGTCGTTGAAGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- CTGTTGTCTCGCTCTTTTGAGCGATGGATCGTAGTAGTCGTTGAAG....
FY454393       <-- CTGTTGTCTCGCTCTTTTGAGCGATGGATCGTAGTAGTCGTTGAAGTTGT
FY432470       <-- CTGTTGTCTCGCTCTTTTGAGCGATGGATCGTAGTAGTCGTTGAAGTTGT
FY445050       <-- CTGTTGTCTCGCTCTTTTGAGCGATGGATCGTAGTAGTCGTTGAAGTTGT
FY452980       <-- CTGTTGTCTCGCTCTTTTGAGCGATGGATCGTAGTAGTCGTTGAAGTTGT
FY433124       <-- CTGTTGTCTCGCTCTTTTGAGCGATGGATCGTAGTAGTCGTTGAAGTTGT
FY447474       <-- CTGTTGTCTCGCTCTTTTGAGCGATGGATCGTAGTAGTCGTTGAAGTTGT
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1301   -   1351
UN13141        --> CGAATCCCAAAACTCCGTCTCCGCGTTTTCTAAGCGCGATTGAGCAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- CGAATCCCAAAACTCCGTCTCCGCGTTTTCTAAGCGCGATTGAGCAGTGA
FY432470       <-- CGAATCCCAAAACTCCGTCTCCGCGTTTTCTAAGCGCGATTGAGCAGTGA
FY445050       <-- CGAATCCCAAAACTCCGTCTCCGCGTTTTCTAAGCGCGATTGAGCAGTGA
FY452980       <-- CGAATCCCAAAACTCCGTCTCCGCGTTTTCTAAGCGCGATTGAGCAGTGA
FY433124       <-- CGAATCCCAAAACTCCGTCTCCGCGTTTTCTAAGCGCGATTGAGCAGTGA
FY447474       <-- CGAATCCCAAAACTCCGTCTCCGCGTTTTCTAAGCGCGATTGAGCAGTGA
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1351   -   1401
UN13141        --> GATCCGACGAATCCGGCGGCTCCGGTGACGAGGACGGAGAGGCCATGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- GATCCGACGAATCCGGCGGCTCCGGTGACGAGGACGGAGAGGCCATGCTG
FY432470       <-- GATCCGACGAATCCGGCGGCTCCGGTGACGAGGACGGAGAGGCCATGCTG
FY445050       <-- GATCCGACGAATCCGGCGGCTCCGGTGACGAGGACGGAGAGGCCATGCTG
FY452980       <-- GATCCGACGAATCCGGCGGCTCCGGTGACGAGGACGGAGAGGCCATGCTG
FY433124       <-- GATCCGACGAATCCGGCGGCTCCGGTGACGAGGACGGAGAGGCCATGCTG
FY447474       <-- GATCCGACGAATCCGGCGGCTCCGGTGACGAGGACGGAGAGGCCATGCTG
FY428832       <-- ..................................................
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1401   -   1451
UN13141        --> TCGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGGCTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- TCGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGGCTCCTT
FY432470       <-- TCGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGGCTCCTT
FY445050       <-- TCGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGGCTCCTT
FY452980       <-- TCGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGGCTCCTT
FY433124       <-- TCGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGGCTCCTT
FY447474       <-- TCGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGGCTCCTT
FY428832       <-- .CGTTTTGCTGTTGAGGATTGTCTCACGCGCTTCTCCCAAGCGGCTCCTT
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1451   -   1501
UN13141        --> CGCCTAGTGAGGAGGAGGAGGAGGAGGAGGAGAAGAGTCCGGTGGATAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- CGCCTAGTGAGGAGGAGGTGGAGGAGGAGGAGAAGAGTCCGGTGGATAAG
FY432470       <-- CGCCTAGTGAGGAGGAGGAGGAGGAGGAGGAGAAGAGTCCGGTGGATAAG
FY445050       <-- CGCCTAGTGAGGAGGAGGAGGAGGAGGAGGAGAAGAGTCCGGTGGATAAG
FY452980       <-- CGCCTAGTGAGGAGGAGGAGGAGGAGGAGGAGAAGAGTCCGGTGGATAAG
FY433124       <-- CGCCTAGTGAGGAGGAGGAGGAGGAGGAGGAGAAGAGTCCGGTGGATAAG
FY447474       <-- CGCCTAGTGAGGAGGAGGAGGAGGAGGAGGAGAAGAGTCCGGTGGATAAG
FY428832       <-- CGCCTAGTGAGGAGGAGGTGGAGGAGGAGGAGAAGAGTCCGGTGGATAAG
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1501   -   1551
UN13141        --> AAGCTGCGACGGTGGAGATGGTGGGTGTCGGAGTGTGGATGGTAGTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- AAGCTGCGACGGTGGAGATGGTGGGTGTCGGAGTGTGGATGGTAGTTGAC
FY432470       <-- AAGCTGCGACGGTGGAGATGGTGGGTGTCGGAGTGTGGATGGTAGTTGAC
FY445050       <-- AAGCTGCGACGGTGGAGATGGTGGGTGTCGGAGTGTGGATGGTAGTTGAC
FY452980       <-- AAGCTGCGACGGTGGAGATGGTGGGTGTCGGAGTGTGGATGGTAGTTGAC
FY433124       <-- AAGCTGCGACGGTGGAGATGGTGGGTGTCGGAGTGTGGATGGTAGTTGAC
FY447474       <-- AAGCTGCGACGGTGGAGATGGTGGGTGTCGGAGTGTGGATGGTAGTTGAC
FY428832       <-- AAGCTGCGACGGTGGAGATGGTGGGTGTCGGAGTGTGGATGGTAGTTGAC
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1551   -   1601
UN13141        --> AGCGAAGAGTAGGACAAGGACTAGAGCGATGAGGAGTGTTGCTCGGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- AGCGAAGAGTAGGACAAGGACTAGAGCGATGAGGAGTGT-GCTCGaaa..
FY432470       <-- AGCGAAGAGTAGGACAAGGACTAGAGCGATGAGGAGTGTTGCTCGGAAAA
FY445050       <-- AGCGAAGAGTAGGACAAGGACTAGAGCGATGAGGAGTGTTGCTCGGAAAA
FY452980       <-- AGCGAAGAGTAGGACAAGGACTAGAGCGATGAGGAGTGTTGCTCGGAAAA
FY433124       <-- AGCGAAGAGTAGGACAAGGACTAGAGCGATGAGGAGTGTTGCTCGGAAAA
FY447474       <-- AGCGAAGAGTAGGACAAGGACTAGAGCGATGAGGAGTGTTGCTCGGAAAA
FY428832       <-- AGCGAAGAGTAGGACAAGGACTAGAGCGATGAGGAGTGTTGCTCGGAAAA
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1601   -   1651
UN13141        --> GGACTTTAGAAGAAGCCTTTAGGACTTTTGTGCTGTGGATCTTGCGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- GGACTTTAGAAGAAGCCTTTAGGACTTTTGTGCTGTGGATCTTGCGGAGG
FY445050       <-- GGACTTTAGAAGAAGCCTTTAGGACTTTTGTGCTGTGGATCTTGCGGAGG
FY452980       <-- GGACTTTAGAAGAAGCCTTTAGGACTTTTGTGCTGTGGATCTTGCGGAGG
FY433124       <-- GGACTTTAGAAGAAGCCTTTAGGACTTTTGTGCTGTGGATCTTGCGGAGG
FY447474       <-- GGACTTTAGAAGAAGCCTTTAGGACTTTTGTGCTGTGGATCTTGCGGAGG
FY428832       <-- GGACTTTAGAAGAAGCCTTTAGGACTTTTGTGCTGTGGATCTTGCGGAGG
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1651   -   1701
UN13141        --> TAGCTGTTGTACCTCTCCAGCTTCACCGTCTTGCTTGTATCCGCAGTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- TAGCTGTTGTACCTCTCCAGCTTCACCGTCTTGCTTGTATCCGCAGTAGC
FY445050       <-- TAGCTGTTGTACCTCTCCAGCTTCACCGTCTTGCTTGTATCCGCAGTAGC
FY452980       <-- TAGCTGTTGTACCTCTCCAGCTTCACCGTCTTGCTTGTATCCGCAGTAGC
FY433124       <-- TAGCTGTTGTACCTCTCCAGCTTCACCGTCTTGCTTGTATCCGCAGTAGC
FY447474       <-- TAGCTGTTGTACCTCTCCAGCTTCACCGTCTTGCTTGTATCCGCAGTAGC
FY428832       <-- TAGCTGTTGTACCTCTCCAGCTTCACCGTCTTGCTTGTATCCGCAGTAGC
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1701   -   1751
UN13141        --> CGACAGTGGCATTTTCGACTTTTGATGGAAACTCGAACTGATTTAGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- CGACAGTGGCATTTTCGACTT.............................
FY445050       <-- CGACAGTGGCATTTTCGACTTTTGATGGAAACTCGAACTGATTTAGATTT
FY452980       <-- CGACAGTGGCATTTTCGACTTTTGATGGAAACTCGAACTGATTTAGATTT
FY433124       <-- CGACAGTGGCATTTTCGACTTTTGATGGAAACTCGAACTGATTTAGATTT
FY447474       <-- CGACAGTGGCATTTTCGACTTTTGATGGAAACTCGAACTGATTTAGATTT
FY428832       <-- CGACAGTGGCATTTTCGACTTTTGATGGAAACTCGAACTGATTTAGATTT
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1751   -   1801
UN13141        --> GTCAATCGATTCTTCTCTCTGAATCGAAGAAGAGGCTTGAAAAAGTGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- GTCAATCGATTCTTCTCTCGGAATCGAAGAAGAGGCT-GAAAAAGTGTCG
FY452980       <-- GTCAATCGATTCTTCTCTCTGAATCGAAGAAGAGGCTTGAAAAAGTGTCG
FY433124       <-- GTCAATCGATTCTTCTCTCTGAATCGAAGAAGAGGCTTGAAAAAGTGTCG
FY447474       <-- GTCAATCGATTCTTCTCTCTGAATCGAAGAAGAGGCTTGAAAAAGTGTCG
FY428832       <-- GTCAATCGATTCTTCTCTCTGAATCGAAGAAGAGGCTTGAAAAAGTGTCG
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1801   -   1851
UN13141        --> ATAACAATTTTTATGGGACTTGAGGGTTTCAGAGAGTTTTTTTCTTTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539619       <-- ..................................................
EY932276       <-- ..................................................
FY448215       <-- ..................................................
FY454393       <-- ..................................................
FY432470       <-- ..................................................
FY445050       <-- ATAACAA...........................................
FY452980       <-- ATAACAA...........................................
FY433124       <-- ATAACAATTTTTATGGGACT-GAGGGTTTCAGAGAG..............
FY447474       <-- ATAACAATTTT.......................................
FY428832       <-- ATAACAATTTTTATGGGACTTGAGGGTTTCAGAGAGTTTTTTTCTTTCTA
EV543364       --> ..................................................
FD945555       --> ..................................................
EY935142       --> ..................................................

               1851   -   1901
UN13141        --> GCCCTGAGAAACC
                   ~~~~~~~~~~~~~
EV539619       <-- .............
EY932276       <-- .............
FY448215       <-- .............
FY454393       <-- .............
FY432470       <-- .............
FY445050       <-- .............
FY452980       <-- .............
FY433124       <-- .............
FY447474       <-- .............
FY428832       <-- GCCCTGAGAAACC
EV543364       --> .............
FD945555       --> .............
EY935142       --> .............