RadishBase

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Alignment for radish unigene UN13219

               1      -     51
UN13219        --> CGGCACGAGGAATAGAACACAAGACCAAACAAACCTTAATACTTTTTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- ..................................................
FD968496       <-- ..................................................
EX759137       <-- ..................................................
EY919086       <-- ..................................................
FD976873       <-- ..................................................
FY446234       --> CGGCACGAGGAATAGAACACAAGACCAAACAAACCTTAATACTTTTTCAT
FD972634       --> ..................................................
EX754930       --> ..................................................
EY923278       --> ..................................................
FY432733       --> ..................................................
FY443441       --> ..................................................
FY442718       --> ..................................................
FD532547       --> ..................................................
FD981096       --> ..................................................

               51     -    101
UN13219        --> ATAAATTGCTGATGGCCTTGCAAGTGTAGAAAACCCTAAGCGTCGTCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- ..................................................
FD968496       <-- ..................................................
EX759137       <-- ..................................................
EY919086       <-- ..................................................
FD976873       <-- ..................................................
FY446234       --> ATAAATTGCTGATGGCCTTGCAAGTGTAGAAAACCCTAAGCATCGTCGAT
FD972634       --> ...........................gGAAAACCCTAAGCGTCGTCGAT
EX754930       --> ...................................ggAAGCGTCGTCGAT
EY923278       --> .......................................ggaTCGTCGAT
FY432733       --> ..................................................
FY443441       --> ..................................................
FY442718       --> ..................................................
FD532547       --> ..................................................
FD981096       --> ..................................................

               101    -    151
UN13219        --> TGCCA-C-AAAGCCGTCTTTCTCTCGTGGCTCTAGTCGACTTGAGAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD968496       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759137       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY919086       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976873       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446234       --> TGCCA-CCAAAGCCGTCTTTCTCTCGTGGCTCTAGTCGACCTGAGAAGAT  Raphanus sativus cv GSK3-1
FD972634       --> TGCC--C-AAAGCCGTCTTTCTCTCGTGGCTCTAGTCGACTTGAGAAGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754930       --> TGCC--C-AAAGCCGTCTTTCTCTCGTGGTTCTAGTCGACTTGAGAAGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923278       --> TGCCATC-AAAGCCGTCTTTCTCTCGTGGCTCTAGTCGACTTGAGAAGAT  Raphanus raphanistrum subsp. landra
FY432733       --> ...................TCTCTCGTGGCTCTAGTCGACCTGAGAAGAT  Raphanus sativus cv GSK3-1
FY443441       --> ...................................TCGACCTGAGAAGAT  Raphanus sativus cv GSK3-1
FY442718       --> .................................................T  Raphanus sativus cv GSK3-1
FD532547       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD981096       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN13219        --> GAAGCTTAACGTCGCGAATCCAACCACTGGTTGCCAGAAGAAGCTCGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- ..................................................
FD968496       <-- ..................................................
EX759137       <-- ..................................................
EY919086       <-- ..................................................
FD976873       <-- ..................................................
FY446234       --> GAAGCTTAACGTCGCGAATCCAACCACTGGTTGCCAGAAGAAGCTCGAGA
FD972634       --> GAAGTTCAACGTCGCGAATCCAACCACTGGTTGCCAGAAGAAGCTCGAGA
EX754930       --> GAAGTTCAACGTCGCGAATCCAACCACTGGTTGCCAGAAGAAGCTCGAGA
EY923278       --> GAAGCTTAACGTCGCGAATCCAACCACTGGTTGCCAGAAGAAGCTCGAGA
FY432733       --> GAAGCTTAACGTCGCGAATCCAACCACTGGTTGCCAGAAGAAGCTCGAGA
FY443441       --> GAAGCTTAACGTCGCGAATCCAACCACTGGTTGCCAGAAGAAGCTCGAGA
FY442718       --> GAAGCTTAACGTCGCGAATCCA-CCACTGGTTGCCAGAAGAAGCTCGAGA
FD532547       --> ..................................................
FD981096       --> ..................................................

               201    -    251
UN13219        --> TCGACGATGACCAGAAACTCCGTGCTATTTATGACAAGAGACTCTCCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- ..................................................
FD968496       <-- ..................................................
EX759137       <-- ..................................................
EY919086       <-- ..................................................
FD976873       <-- ..................................................
FY446234       --> TCGACGATGACCAGAAACTCCGTGCTATTTATGACAAGAGACTCTCCCAA
FD972634       --> TCGACGATGACCAGAAACTCCGTGCTTTTTATGATAAGAGACTCTCCCAA
EX754930       --> TCGACGATGACCAGAAACTCCGTGCTTTTTATGATAAGAGACTCTCCCAA
EY923278       --> TCGACGATGACCAGAAACTCCGTGCTATTTATGACAAGAGACTCTCCCAA
FY432733       --> TCGACGATGACCAGAAACTCCGTGCTATTTATGACAAGAGACTCTCCCAA
FY443441       --> TCGACGATGACCAGAAACTCCGTGCTATTTATGACAAGAGACTCTCCCAA
FY442718       --> TCGACGATGACCAGAAACTCCGTGCTATTTATGACAAGAGACTCTCCCAA
FD532547       --> ..................................................
FD981096       --> ..................................................

               251    -    301
UN13219        --> GAAGTCAGTGGTGATGCTTTGGGCGAGGAGTTCAAGGGATACGTTTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- ..................................................
FD968496       <-- ..................................................
EX759137       <-- ..................................................
EY919086       <-- ..................................................
FD976873       <-- ..................................................
FY446234       --> GAAGTCAGTGGTGATGCTTTGGGCGAGGAGTTCAAGGGATACGTTTTCAA
FD972634       --> GAAGTCAGTGGTGATGCTTTGGGCGAGGAGTTCAAGGGATACGTTTTCAA
EX754930       --> GAAGTCAGTGGTGATGCTTTGGGCGAGGAGTTCAAGGGATACGTTTTCAA
EY923278       --> GAAGTCAGTGGTGATGCTTTGGGCGAGGAGTTCAAGGGATACGTTTTCAA
FY432733       --> GAAGTCAGTGGTGATGCTTTGGGCGAGGAGTTCAAGGGATACGTTTTCAA
FY443441       --> GAAGTCAGTGGTGATGCTTTGGGCGAGGAGTTCAAGGGATACGTTTTCAA
FY442718       --> GAAGTCAGTGGTGATGCTTTGGGCGAGGAGTTCAAGGGATACGTTTTCAA
FD532547       --> ..................................................
FD981096       --> ..................................................

               301    -    351
UN13219        --> GATCATGGGTGGGTGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- ..................................................
FD968496       <-- ..................................................
EX759137       <-- ..................................................
EY919086       <-- ..................................................
FD976873       <-- ..................................................
FY446234       --> GATCATGGGTGGGTGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTTC
FD972634       --> GATCATGGGTGGGTGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTTC
EX754930       --> GATCATGGGTGGGTGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTTC
EY923278       --> GATCATGGGTGGGTGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTTC
FY432733       --> GATCATGGGTGGGTGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTTC
FY443441       --> GATCATGGGTGGGTGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTTC
FY442718       --> GATCATGGGTGGGTGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTTC
FD532547       --> ..................................................
FD981096       --> ..................................................

               351    -    401
UN13219        --> TAACTCCAGGACGTGTTCGTCTTTTGCTTCACAGAGGAACTCCTTGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- ........................TGCTTCACAGAGGAACTCCTTGCTTC  Raphanus raphanistrum subsp. maritimus
FD968496       <-- .................................GAGGAACTCCTTGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759137       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY919086       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976873       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446234       --> TAACTCCAGGACGTGTTCGTCTTTTGCTTCACAGAGGAACACCTTGCTTC  Raphanus sativus cv GSK3-1
FD972634       --> TAACTCCTGGCCGTGTTCGCCTTTTGCTTCACAGAGGAACTCCTTGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754930       --> TAACTCCTGGCCGTGTTCGCCTTTTGCTTCACAGAGGAACTCCTTGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923278       --> TAACTCCTGGCCGTGTTCGCCTTTTGCTTCGCAGAGGAGCTCCTTGCTTC  Raphanus raphanistrum subsp. landra
FY432733       --> TAACTCCAGGACGTGTTCGTCTTTTGCTTCACAGAGGAACACCTTGCTTC  Raphanus sativus cv GSK3-1
FY443441       --> TAACTCCAGGACGTGTTCGTCTTTTGCTTCACAGAGGAACACCTTGCTTC  Raphanus sativus cv GSK3-1
FY442718       --> TAACTCCAGGACGTGTTCGTCTTTTGCTTCACAGAGGAACACCTTGCTTC  Raphanus sativus cv GSK3-1
FD532547       --> ............................................gGCTTC  Raphanus raphanistrum subsp. maritimus
FD981096       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN13219        --> AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
FD968496       <-- AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
EX759137       <-- ..................................................
EY919086       <-- ..................................................
FD976873       <-- ..................................................
FY446234       --> AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
FD972634       --> AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
EX754930       --> AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
EY923278       --> AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
FY432733       --> AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
FY443441       --> AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
FY442718       --> AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
FD532547       --> AGAGGACACGGAAGGAGGACTGGAGAGAGGAGAAGAAAGTCTGTTCGTGG
FD981096       --> ..................................................

               451    -    501
UN13219        --> TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
FD968496       <-- TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
EX759137       <-- ........................TGTTCTTAACCTTGTCATTGTTAAGA
EY919086       <-- .........................GTTCTTAACCTTGTCATTGTTAAGA
FD976873       <-- ..................................................
FY446234       --> TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
FD972634       --> TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
EX754930       --> TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
EY923278       --> TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
FY432733       --> TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
FY443441       --> TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
FY442718       --> TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
FD532547       --> TTGTATTGTCAGCCAAGATCTCTCTGTTCTTAACCTTGTCATTGTTAAGA
FD981096       --> ..................................................

               501    -    551
UN13219        --> AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
FD968496       <-- AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
EX759137       <-- AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
EY919086       <-- AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
FD976873       <-- ..................................................
FY446234       --> AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
FD972634       --> AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
EX754930       --> AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
EY923278       --> AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
FY432733       --> AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
FY443441       --> AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
FY442718       --> AAGGTGAGAAGGATCTTCCCGGGCTTACCGATACCGAGAAGCCAAGAATG
FD532547       --> AAGGTGAGAAGGATCTTCCCGGACTTACCGATACCGAGAAGCCAAGAATT
FD981096       --> ..................................................

               551    -    601
UN13219        --> AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
FD968496       <-- AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
EX759137       <-- AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
EY919086       <-- AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
FD976873       <-- ..................................................
FY446234       --> AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
FD972634       --> AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
EX754930       --> AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
EY923278       --> AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
FY432733       --> AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
FY443441       --> AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
FY442718       --> AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
FD532547       --> AGGGGACCCAAGAGAGCTTCAAAGATCCGTAAACTGTTCAACCTCACCAA
FD981096       --> ..................................................

               601    -    651
UN13219        --> GGATGATGATGTGAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- GGATGATGATGTGAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus raphanistrum subsp. maritimus
FD968496       <-- GGATGATGATGTCAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759137       <-- GGATGATGATGTCAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY919086       <-- GGATGATGATGTGAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus raphanistrum subsp. landra
FD976873       <-- ...................gACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446234       --> GGATGATGATGTGAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus sativus cv GSK3-1
FD972634       --> GGATGATGATGTCAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754930       --> GGATGATGATGTCAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923278       --> GGATGATGATGTGAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus raphanistrum subsp. landra
FY432733       --> GGATGATGATGTGAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus sativus cv GSK3-1
FY443441       --> GGATGATGATGTGAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus sativus cv GSK3-1
FY442718       --> GGATGATGATGTGAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus sativus cv GSK3-1
FD532547       --> GGATGATGATGTGAGGAAGTACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus raphanistrum subsp. maritimus
FD981096       --> ...................gACGTCAACACTTACCGCCGCAAGTTCACAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN13219        --> ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
FD968496       <-- GCAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
EX759137       <-- ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
EY919086       <-- ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
FD976873       <-- ACAAGAAAGGTAAGGAAGTGAGCAAAGCTCCCAAGATCCAGAGGCTTGTG
FY446234       --> ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
FD972634       --> GCAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
EX754930       --> ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
EY923278       --> ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
FY432733       --> ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
FY443441       --> ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
FY442718       --> ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
FD532547       --> ACAAGAAAGGTAAGGAAGTGAGCAAAGCCCCCAAGATCCAGAGGCTTGTG
FD981096       --> ACAAGAAAGGTAAGGAAGTGAGCAAAGCTCCCAAGATCCAGAGGCTTGTG

               701    -    751
UN13219        --> ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCCGACAAGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCCGACAAGAAGAA  Raphanus raphanistrum subsp. maritimus
FD968496       <-- ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCAGACAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759137       <-- ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCAGACAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY919086       <-- ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCCGACAAGAAGAA  Raphanus raphanistrum subsp. landra
FD976873       <-- ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCCGACAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446234       --> ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCCGAC........  Raphanus sativus cv GSK3-1
FD972634       --> ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCAGACAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754930       --> ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCAGACA-GAAGA.  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923278       --> ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCCGACAAGAAGAA  Raphanus raphanistrum subsp. landra
FY432733       --> ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCCGACAAGAAGAA  Raphanus sativus cv GSK3-1
FY443441       --> ACTCCGTTGACACTTCAGAGGAAGAGAGCTAGAATCGCCGACAAGAAGAA  Raphanus sativus cv GSK3-1
FY442718       --> ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCCGACAAGAAGAA  Raphanus sativus cv GSK3-1
FD532547       --> ACTCCTTCGACACTTCAGAGGAAGAGAGCTAGAATCGCCGACAAGAAGAA  Raphanus raphanistrum subsp. maritimus
FD981096       --> ACTCCTTTGACACTTCAGAGGAAGAGAGCTAGAATCGCCGACAAGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN13219        --> GAGGATTGCTAAGGCCAACTCTGATGCTGCTGAGTACCAGAAGCTTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- GAGGATTGCTAAGGCCAACTCTGATGCTGCTGAGTACCAGAAGCTTCTTG  Raphanus raphanistrum subsp. maritimus
FD968496       <-- GAGGATTGCTAGGGCTAACTCCGATGCTGCTGAGTACCAGAAGCTTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759137       <-- GAGGATTGCTAAGGCTAACTCTGATGCTGCTGAGTACCAGAAGCTTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY919086       <-- GAGGATTGCTAAGGCCAACTCTGATGCTGCTGAGTACCAGAAGCTTCTTG  Raphanus raphanistrum subsp. landra
FD976873       <-- GAGGATTGCTAAGGCTAACTCTGATGCTGCTGAGTACCACAAGCTTCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446234       --> ..................................................  Raphanus sativus cv GSK3-1
FD972634       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754930       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923278       --> ..................................................  Raphanus raphanistrum subsp. landra
FY432733       --> GAGGATTGCTAAGGCCAACTCTGATGCTGCTGAGTACCAGAAGCTTCTTG  Raphanus sativus cv GSK3-1
FY443441       --> GAGGATTGCTAAGGCCAACTCTGATGCTGCTGAGTACCAGAAGCTTCTTG  Raphanus sativus cv GSK3-1
FY442718       --> GAGGATTGCTAAGGCCAACTCTGATGCTGCTGAGTACCAGAAGCTTCTTG  Raphanus sativus cv GSK3-1
FD532547       --> GAGGATTGCTAAGGCCAACTCTGATGCTGCTGAGTACCAGAAGCTTCTTG  Raphanus raphanistrum subsp. maritimus
FD981096       --> GAGGATTGCTAAGGCTAACTCTGATGCTGCTGAGTACCACAAGCTTCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN13219        --> CCTCAAGGTTGAAGGAACAGCGTGACAAGAGGAGTGAGAGTTTGGCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- CCTCAAGGTTGAAGGAACAGCGTGACAAGAGGAGTGAGAGTTTGGCAAAG
FD968496       <-- CCTCAAGGTTGAAGGAACAACGTGACAAGAGGAGTGAGAGTTTGGCAAAG
EX759137       <-- CCTCAAGGTTGAAGGAACAACGTGACAAGAGGAGTGAGAGTTTGACAAAG
EY919086       <-- CCTCAAGGTTGAAGGAACAGCGTGACAAGAGGAGTGAGAGTTTGGCAAAG
FD976873       <-- CCTCAAGGTTGAAGGAACAGCGTGACAAGAGGAGTGAGAGTTTGGCAAAG
FY446234       --> ..................................................
FD972634       --> ..................................................
EX754930       --> ..................................................
EY923278       --> ..................................................
FY432733       --> CCTCAAGGTTGAAGGAACAGCGTGACAAGAGGAGTGAGAGTTTGGCAAAG
FY443441       --> CCTCAAGGTTGAAGGAACAGCGTGACAAGAGGAGTGAGAGTTTGGCAAAG
FY442718       --> CCTCAAGGTTGAAGGAACAGCGTGACAAGAGGAGTGAGAGTTTGGCAAAG
FD532547       --> CCTCAAGGTTGAAGGAACAGCGTGACAAGAGGAGTGAGAGTTTGGCAAAG
FD981096       --> CCTCAAGGTTGAAGGAACAGCGTGACAAGAGGAGTGAGAGTTTGGCAAAG

               851    -    901
UN13219        --> AAGAGGTCCAGACTGTCTTCCGCTGCTGCCAAGCCTTCCGTTACTGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- AAGAGGTCCAGACTGTCTTCCGCTGCTGCCAAGCCTTCCGTTACTGCTTG  Raphanus raphanistrum subsp. maritimus
FD968496       <-- AAGAGGTCTAGACTTTCTTCTGCTGCTGCCAAGCCTTCCGTTACTGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759137       <-- AAGAGGTCTAGACTTTTTTCTGCTGCTGCCAAGCCTTCCGTTACTGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY919086       <-- AAGAGGTCCAGACTGTCTTCCGCTGCTGCCAAGCCTTCCGTTACTGCTTG  Raphanus raphanistrum subsp. landra
FD976873       <-- AAGAGGTCTAGACTTTCTTCTGCTGCTGCCAAGCCTTCCGTTACTGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446234       --> ..................................................  Raphanus sativus cv GSK3-1
FD972634       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754930       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923278       --> ..................................................  Raphanus raphanistrum subsp. landra
FY432733       --> AAGAGGTCCAGACTGTCTTCCGCTGCTGCCAAGCCTTCCGTTACTGCTTG  Raphanus sativus cv GSK3-1
FY443441       --> AAGAGGTCCAGACTGTCTTCCGCTGCTGCCAAGCCTTCCGTTACTGCTTG  Raphanus sativus cv GSK3-1
FY442718       --> AAGAGGTCCAGACTGTCTTCCGCTGCTGCCAAGCCTTCCGTTACTGCTTG  Raphanus sativus cv GSK3-1
FD532547       --> AAGAGGTCCAGACTGTCTTCCGCTGCTGCCAAGCCTTCCGTTACTGCTTG  Raphanus raphanistrum subsp. maritimus
FD981096       --> AAGAGGTCTAGACTTTCTTCTGCTGCTGCCAAGCCTTCCGTTACTGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               901    -    951
UN13219        --> AGAATCACCGTTCTAGTTTTGTTTTGCTTCTCCGGCATTCCAAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- AGAATCACCGTTCTAGTTTTGTTTTGCTTTTCCGGCATTCCAAAAAAAAA  Raphanus raphanistrum subsp. maritimus
FD968496       <-- AGAATCACCGTTCTAGTTTTGTTTTGCTTTTCCGGCATTCCAAAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759137       <-- AGAATCACCGTTCTAGTTTTGTTTTGCTTTTCCGGCATTCCAAAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY919086       <-- AGAATCACCGTTCTAGTTTTGTTTTGCTTTTCCGGCATTCCAAAAAAAAA  Raphanus raphanistrum subsp. landra
FD976873       <-- AGAATCACCGTTCTAGTTTTGTTTTGCTTCTCCGac..............  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446234       --> ..................................................  Raphanus sativus cv GSK3-1
FD972634       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754930       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923278       --> ..................................................  Raphanus raphanistrum subsp. landra
FY432733       --> AGAATCACCGTTCTAGTTTTGTTTTGCTTCTCCGGCATTCC.........  Raphanus sativus cv GSK3-1
FY443441       --> AGAATCACCGTTCTAGTTTTGTTTTGCTTCTCCGGCATTCC.........  Raphanus sativus cv GSK3-1
FY442718       --> AGAATCACCGTTCTAGTTTTGTTTTGCTTCTCCGGCATTCCAAAAAAAAA  Raphanus sativus cv GSK3-1
FD532547       --> AGAATCACCGTTCTAGTTTTGTTTTGCTTCTCCGGCATTCCAAAAAAAAA  Raphanus raphanistrum subsp. maritimus
FD981096       --> AGAATCACCGTTCTAGTTTTGTTTTGCTTCTCCGac..............  Raphanus raphanistrum subsp. raphanistrum (NY)

               951    -   1001
UN13219        --> --GAGTTACTTCGAGTTCTTGTTTCAGTTGTTACTACATCCATTACATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- --GAGTTACTTCGAGTTCTTGTTTCAGTTGTTACTACATCCATTACATGG
FD968496       <-- --GAGTTACTTCGAGTTCTTGTTTCAGTTGTT---ACATCCATTACATGG
EX759137       <-- --GAGTTACTTCGAGTTCTTGTTTCAGTTGTT---ACATCCATTACATGG
EY919086       <-- -AGAGTTACTTCGAGTTCCTGTTTCAGTTGTTACTACATCCATTACATGG
FD976873       <-- ..................................................
FY446234       --> ..................................................
FD972634       --> ..................................................
EX754930       --> ..................................................
EY923278       --> ..................................................
FY432733       --> ..................................................
FY443441       --> ..................................................
FY442718       --> AAGAGTTACTTCGAGTTCTTGTTTCAGTTGTTACTACATCCATTACATGG
FD532547       --> --GAGTTACTTCGAGTTCTTGTTTCAGTTGTTACTACATCCATTACATGG
FD981096       --> ..................................................

               1001   -   1051
UN13219        --> GTGTAAACACCACTACTTTGGACTTGTGTTTTTTGATTTGTGCTCTTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- GTGTAAACACCACTACTTTGGACTTGTGTTTTTTGATTTGTGCTCTTTAG
FD968496       <-- GTGTAAACACCACTACTTTGGACTTGTGTTTTTTGATTTGTGCTCTTTAG
EX759137       <-- GTGTAAACACCACTACTTTGGACTTGTGTTTTTTGATTTGTGCTCTTTAG
EY919086       <-- ATGTAAACACCACTACTTTGGAATTGTGTTTTTTGATTTGTGCTCTTTAG
FD976873       <-- ..................................................
FY446234       --> ..................................................
FD972634       --> ..................................................
EX754930       --> ..................................................
EY923278       --> ..................................................
FY432733       --> ..................................................
FY443441       --> ..................................................
FY442718       --> GTGTAAACACCACTACTTTGGACTTGTGTTTTTTGATTTGTGCTCTTTAG
FD532547       --> GTGTAAACACCACTACTTTGGACTTGTGTTTTTTGATTTGTGCTCTTTAG
FD981096       --> ..................................................

               1051   -   1101
UN13219        --> TTAAAAAGACCATTTTAAATTCAACTTTTCGGTTCTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530721       <-- TTAAAAAGACCATTTTAAATTC.................
FD968496       <-- TTAAAAAGACCATTTTAAATTCAACTTTTCGGTTCTTtc
EX759137       <-- TTAAAAAGACCATTTTAAATTCAACTTTTCGGTTCTTac
EY919086       <-- TTAAAAAGACCATTTTAAATTCAACTTTTCGGTTCTTGC
FD976873       <-- .......................................
FY446234       --> .......................................
FD972634       --> .......................................
EX754930       --> .......................................
EY923278       --> .......................................
FY432733       --> .......................................
FY443441       --> .......................................
FY442718       --> TTAAAAATACCATTTTAAATc..................
FD532547       --> TTAAAAA................................
FD981096       --> .......................................