Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN13257

               1      -     51
UN13257        --> AGTATCAACTTAAAACCAAAATTTAAAAACAATAAACGATTTTCCGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- ..................................................
FD556943       <-- ..................................................
EX888575       <-- ..................................................
EW732005       <-- ..................................................
EX892484       --> AGTATCAACTTAAAACCAAAATTTAAAAACAATAAACGATTTTCCGGAAA
FD553153       --> .............................................gaAAA
EX774891       --> ..................................................
EW737326       --> ..................................................
EW736378       --> ..................................................

               51     -    101
UN13257        --> GTGTTACAATGGTTTTTGCTAATAAAAAGTTTTGTTTGTAAAAATATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- ..................................................
FD556943       <-- ..................................................
EX888575       <-- ..................................................
EW732005       <-- ..................................................
EX892484       --> GTGTTACAATGGTCTTT---AATAAAAAGTTTTGTTTGTAAAAATATGGT
FD553153       --> GTGTTACAAAGGTTTTTGCTAATAAAAAGTTTTGTTTGTAAAAATATGGT
EX774891       --> ...............ttttTAATAAAAAGTTTTGTTTGTAAAAATATGGT
EW737326       --> ....................AATAAAAAGTTTTGTTTGTAAAAATATGGT
EW736378       --> ..................................................

               101    -    151
UN13257        --> TGTTCATACATCGCAATC-AAAAGTAATTTGAGAACCGCTGCGCTGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- ..................................................
FD556943       <-- ..................................................
EX888575       <-- ..................................................
EW732005       <-- ..................................................
EX892484       --> TGTTCATACATCGCAATC-AAAAGTAATTTGAGAACCGCTGCGATGGTTG
FD553153       --> TGTTCATACATCGCAATC-AAAAGTAATTTGAGAACCGCTGCGCTGGTTG
EX774891       --> TGTTCATACATCGCAATC-AAAAGTAATTTGAGAACCGCTGCGCTGGTTG
EW737326       --> TGTTCATACATCGCAATCGAAAAGTAATTTGAGAACCGCTGCGCTGGTTG
EW736378       --> ..................................................

               151    -    201
UN13257        --> CATAATAGCACTTTCACTACCAAACTTCAAAGGCCTTAAACAGGCAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- ....................................TAAACAGGCAAAAA
FD556943       <-- ............................................agcAAA
EX888575       <-- ..................................................
EW732005       <-- ..................................................
EX892484       --> CATAATAGCACTTTCACTACCAAACTTCAAAGGCCTTAA-CAGGCAAAAA
FD553153       --> CATAATAGCACTTTCACTACCAAACTTCAAAGGCCTT-GACAGGCAAAAA
EX774891       --> CATAATAGCACTTTCACTACCAAACTTCAAAGGCCTTAA-CAGGCAAAAA
EW737326       --> CATAATAGCACTTTCACTACCAAACTTCAAAGGCCTTAAACAGGCAAAAA
EW736378       --> .ATAATAGCACTTTCACTACCAAACTTCAAAGGCCTTAAACAGGCAAAAA

               201    -    251
UN13257        --> AAA-GAGATTAAAACTGTGCTCACTCTCCTTTGTTCTCTGCTTGCAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- AAA-GAGATTAAAACTGTGCTCACTCTCCTTTGTTCTCTGCTTGCAAAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD556943       <-- AAA-GAGATGAAAACTGTGCTCACTCTCCTTTGT-CTCTGCGTGCAGAGA  Raphanus raphanistrum subsp. landra
EX888575       <-- AAA-GAGATTAAAACTGTGCTCACTCTCCTTTGTTCTCTGCTTGCAGAGA  Raphanus sativus var. oleiformis
EW732005       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX892484       --> AAAAGAAATTAAAACTGTGCTCACTCTCCTTTGTTCTCTGCTTGCAGAGA  Raphanus sativus var. oleiformis
FD553153       --> AA--GAGATGAAAACTGTGCTCACTCTCCTTTGTTCTCTGCGTGCAGAGA  Raphanus raphanistrum subsp. landra
EX774891       --> AA--GAGATGAAAACTGTGCTCACTCTCCTTTGTTCTCTGCTTGCAGAGA  Raphanus raphanistrum subsp. landra
EW737326       --> AAA-GAGATTAAAACTGTGCTCACTCTCCTTTGTTCTCTGCTTGCAAAGA  Raphanus sativus cv Rat-Tail Radish #3870
EW736378       --> AAA-GAGATTAAAACTGTGCTCACTCTCCTTTGTTCTCTGCTTGCAAAGA  Raphanus sativus cv Rat-Tail Radish #3870

               251    -    301
UN13257        --> AGCTTTAACGGCTGCTGGATCGTCTTGTGGCCTCATTGCAGGGAAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- AGCTTTAACGGCTGCTGGATCGTCTTGTGGCCTCATTGCAGGGAAGAGAA
FD556943       <-- AGCTTTAACGGCTGCTGGATCGTCTTGTGGCCTCATTGCAGGGAAGAGAA
EX888575       <-- AGCTTTAACGGCTGCTGGATCGTCTTGTGGCCTCATTGCAGGGAAGAGAA
EW732005       <-- ..................................................
EX892484       --> AGCTTTAACGGCTGCTGGATCGTCTTGTGGCCTCATTGCAGGGAAGAGAA
FD553153       --> AGCTTTAACGGCTGCTGGATCGTCTTGTGGCCTCATTGCAGGGAAGAAAA
EX774891       --> AGCTTTAACGGCTGCTGGATCGTCTTGTGGCCTCATTGCAGGGAAGAGAA
EW737326       --> AGCTTTAACGGCTGCTGGATCGTCTTGTGGCCTCATTGCAGGGAAGAGAA
EW736378       --> AGCTTTAACGGCTGCTGGATCGTCTTGTGGCCTCATTGCAGGGAAGAGAA

               301    -    351
UN13257        --> TAACCTCCTTGATGTTCTGAGAGTCGGTGAATAGCATGGCAAGCCTGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- TAACCTCCTTGATGTTCTGAGAGTCGGTGAATAGCATGGCAAGCCTGTCA
FD556943       <-- TAACCTCCTTGATGTTCTGAGAGTCGGTGAATAGCATGGCAAGCCTGTCA
EX888575       <-- TAACCTCCTTGATGTTCTGAGAGTCGGTGAATAGCATGGCAAGCCTGTCA
EW732005       <-- ..................................................
EX892484       --> TAACCTCCTTGATGTTCTGAGAGTCGGTGAATAGCATGGCAAGCCTGTCA
FD553153       --> TAACCTCCTTGATGTTCTGAGAGTCGGTGAATAGCATGGCAAGCCTGTCA
EX774891       --> TAACCTCCTTGATGTTCTGAGAGTCGGTGAATAGCATGGCAAGCCTGTCA
EW737326       --> TAACCTCCTTGATGTTCTGAGAGTCGGTGAATAGCATGGCAAGCCTGTCA
EW736378       --> TAACCTCCTTGATGTTCTGAGAGTCGGTGAATAGCATGGCAAGCCTGTCA

               351    -    401
UN13257        --> ATACCCAACCCCC-AGCCACCCGTAGGAGCCAACCCATATTCCAAAGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- ATACCCAACCCCC-CACCACCCGTAGGAGCCAACCCATATTCCAAAGCAT
FD556943       <-- ATACCCAACCCCC-AGCCACCCGTAGGAGCCAGCCCATATTCCAAAGCAT
EX888575       <-- ATACCCAACCCCCCAGCCACCCGTAGGAGCCAAACCATATTCCAAAGCAT
EW732005       <-- ...................CCCGTAGGAGCCAACCCATATTCCAAAGCAT
EX892484       --> ATACCCAACCCCC-AGCCACCCGTAGGAGCCAAACCATATTCCAAAGCAT
FD553153       --> ATACCCAACCCCC-AGCCACCCGTAGGAGCCAGCCCATATTCCAAAGCAT
EX774891       --> ATACCCAACCCCC-ACCCACCCGTAGGAGCCAACCCATATTCCAAAGCAT
EW737326       --> ATACCCAACCCCC-ACCCACCCGTAGGAGCCAACCCATATTCCAAAGCAT
EW736378       --> ATACCCAACCCCC-ACCCACCCGTAGGAGCCAACCCATATTCCAAAGCAT

               401    -    451
UN13257        --> TGCAGAAAGTCTCATCTAAAGCCATGGCCTCATCGTCTCCAGACTGCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- TGCAGAAAGTCTCATCTAAAGCCATGGCCTCATCGTCTCCAGACTGCCTA
FD556943       <-- TGCAGAAAGTCTCATCTAAAGCCATGGCCTCATCGTCTCCAGACTGCCTA
EX888575       <-- TGCAGAAAGTCTCATCTAAAGCCATGGCCTCATCGTCTCCAGACTGCCTA
EW732005       <-- TGCAGAAAGTCTCATCTAAAGCCATGGCCTCATCGTCTCCAGACTGCCTA
EX892484       --> TGCAGAAAGTCTCATCTAAAGCCATGGCCTCATCGTCTCCAGACTGCCTA
FD553153       --> TGCAGAAAGTCTCATCTAAAGCCATGGCCTCATCGTCTCCAGACTGCCTA
EX774891       --> TGCAGAAAGTCTCATCTAAAGCCATCGCCTCATCGTCTCCAGACTGCCTA
EW737326       --> TGCAGAAAGTCTCATCTAAAGCCATGGCCTCATCGTCTCCAGACTGCCTA
EW736378       --> TGCAGAAAGTCTCATCTAAAGCCATGGCCTCATCGTCTCCAGACTGCCTA

               451    -    501
UN13257        --> TCTTTGAGTTGATCAGCAAACCTTTGACGCTGAACCACTGGATCGTTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- TCTTTGAGTTGATCAGCAAACCTTTGACGCTGAACCACTGGATCGTTCAG
FD556943       <-- TCTTTGAGTTGATCAGCAAACCTTTGACGCTGAACCACTGGATCGTTCAG
EX888575       <-- TCCTTCAGTTGATCAGCAAACCTTTGACGCTGAACCACAGGATCGTTCAG
EW732005       <-- TCTTTGAGTTGATCAGCAAACCTTTGACGCTGAACCACTGGATCGTTCAG
EX892484       --> TCCTTCAGTTGATCAGCAAACCTTTGACGCTGAACCACAGGATCGTTCAG
FD553153       --> TCTTTGAGTTGATCAGCAAACCTTTGACGCTGAACCACTGGATCGTTCAG
EX774891       --> TCCTTGAGTTGATCAGCGAACCTTTGACGCTGAACCACAGGATCGTTCAA
EW737326       --> TCTTTGAGTTGATCAGCAAACCTTTGACGCTGAACCACTGGATCGTTCAG
EW736378       --> TCTTTGAGTTGATCAGCAAACCTTTGACGCTGAACCACTGGATCGTTCAG

               501    -    551
UN13257        --> CTCGGTGTAAGCATTGCAGAGTTCATGTTGGTTGATAAAGAGCTCGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- CTCGGTGTAAGCATTGCAGAGTTCATGTTTGTTGATAAAGAGCTCGAATC
FD556943       <-- CTCGGTGTAGGCATTGCAGAGTTCATGTTGGTTGATAAAGAGCTCGAATC
EX888575       <-- CTCGGTGTAGGCATTGCAGAGTTCATGTTGGTTGATAAAGAGCTCGAATC
EW732005       <-- CTCGGTGTAAGCATTGCAGAGTTCATGTTTGTTGATAAAGAGCTCGAATC
EX892484       --> CTCGGTGTAGGCATTGCAGAGTTCATGTTGGTTGATAAAGAGCTCGAATC
FD553153       --> CTCGGTGTAGGCATTGCAGAGTTCATGTTGGTTGATAAAGAGCTCGAATC
EX774891       --> CTCGGTGTAAGCATTGCAGAGTTCATGTTGGTTGATAAAGAGCTCGAATC
EW737326       --> CTCGGTGTAAGCATTGCAGAGTTCATGTTTGTTGATAAAGAGCTCGAATC
EW736378       --> CTCGGTGTAAGCATTGCAGAGTTCATGTTTGTTGATAAAGAGCTCGAATC

               551    -    601
UN13257        --> TCTCGGTGAGAACATTGTTTGATCTGTGCCACTTTGCCAAGGGAGACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- TCTCGGTGAGAACATTGTTTGATCTGTGCCACTTTGCCAAGGGAGACATG
FD556943       <-- TCTCGGTGAGAACGTTGTTTGGTCTGTGCCACTTTGCCAACGGAGACATG
EX888575       <-- TCTCGGTGAGAACATTGTTTGATCTGTGCCACTTTGCCAAGGGAGACATG
EW732005       <-- TCTCGGTGAGAACATTGTTTGATCTGTGCCACTTTGCCAAGGGAGACATG
EX892484       --> TCTCGGTGAGAACATTGTTTGATCTGTGCCACTTTGCCAAGGGAGACATG
FD553153       --> TCTCGGTGAGAACGTTGTTTGGTCTGTGCCACTTTGCCAACGGAGACATG
EX774891       --> TCTCGGTGAGAACATTGTTCGATCTGTGCCACTTTGCCAAGGGAGACATG
EW737326       --> TCTCGGTGAGAACATTGTTTGATCTGTGCCACTTTGCCAAGGGAGACATG
EW736378       --> TCTCGGTGAGAACATTGTTTGATCTGTGCCACTTTGCCAAGGGAGACATG

               601    -    651
UN13257        --> ATCTCGGGATGGTTGATGATGAAAGTCGGGTTCACACATGTCACTTCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- ATCTCGGGATGGTTGATGATGAAAGTCGGGTTCACACATGTCACTTCCAG
FD556943       <-- ATCTCGGGATGGTTGATGATGAATGTCGGGTTCACACATGTCACTTCCAG
EX888575       <-- ATCTCGGGATGGTTGATGATGAAAGTCGGGTTCACACATGTCACTTCCAG
EW732005       <-- ATCTCGGGATGGTTGATGATGAAAGTCGGGTTCACACATGTCACTTCCAG
EX892484       --> ATCTCGGGATGGTTGATGATGAAAGTCGGGTTCACACATGTCACTTCCAG
FD553153       --> ATCTCGGGATGGTTGATGATGAATGTCGGGTTCACACATGTCACTTCCAG
EX774891       --> ATCTCGGGATGGTTGATGATGAAAGTCGGGTTCACACATGTCACTTCCAG
EW737326       --> ATCTCGGGATGGTTGATGATGAAAGTCGGGTTCACACATGTCACTTCCAG
EW736378       --> ATCTCGGGATGGTTGATGATGAAAGTCGGGTTCACACATGTCACTTCCAG

               651    -    701
UN13257        --> AAATTCTCCAACAAGTTTATCTAGCAGACGAGCTGTTGTCTGAGGAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- AAATTCTCCAACAAGTTTATCTAGCAGACGAGCTGTTGTCTGAGGAGGAG
FD556943       <-- AAATTCTCCAACAAGTTTATCTAGCAGACGAGCAGTTGTCTGAGGAGGAG
EX888575       <-- AAATTCTCCAACAAGTTTATCTAGCAGACGAGCTGTTGTCTGAGGAGGAG
EW732005       <-- AAATTCTCCAACAAGTTTATCTAGCAGACGAGCTGTTGTCTGAGGAGGAG
EX892484       --> AAATTCTCCAACAAGTTTATCTAGCAGACGAGCTGTTGTCTGAGGAGGAG
FD553153       --> AAATTCTCCAACAAGTTTATCTAGCAGACGA...................
EX774891       --> AAATTCTCCAACAAGTTTATCTAGCAGACGAGCTGTTGCCTGAGGAGGAG
EW737326       --> AAATTCTCCAACAAGTTTATCTAGCAGACGAGCTGTTGTCTGAGGAGGAG
EW736378       --> AAATTCTCCAACAAGTTTATCTAGCAGACGAGCTGTTGTCTGAGGAGGAG

               701    -    751
UN13257        --> GGCATTTCACGTCGAACTTGGCACACGCATCAATCAAATACTTGTTGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- GGCATTTCACGTCGAACTTGGCACACGCATCAATCAAATACTTGTTGGCT
FD556943       <-- GGCATTTCACGTCGAACTTGGCACACGCATCAATCAAATACTTGTTGGCT
EX888575       <-- GGCATTTCACGTCGAACTTGGCACACGCATCAATCAAATACTTGTTGGCT
EW732005       <-- GGCATTTCACGTCGAACTTGGCACACGCATCAATCAAATACTTGTTGGCT
EX892484       --> GGCATTTCACGTCGAACTTGGCACACGCATCAATCAAATACTTGTTGGCT
FD553153       --> ..................................................
EX774891       --> GGCATTTCACGTCGAACTTGGC............................
EW737326       --> GGCATTTCACGTCGAACTTGGCACACGCATCAATCAAATACTTGTTGGCT
EW736378       --> GGCATTTCACGTCGAACTTGGCACACGCATCAATCAAATACTTGTTGGCT

               751    -    801
UN13257        --> TCTTCACTAGCCAAATCTTTTGGTATATTAAGGTTAGCCACCTTCTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- TCTTCACTAGCCAAATCTTTTGGTATATTAAGGTTAGCCACCTTCTCCAA
FD556943       <-- TCTTCACTAGCCAAATCTTTTGGTACATTAAGGTTAGCCACCTTCTCCAA
EX888575       <-- TCTTCACTAGCCAAATCCTTTGGTATATTAAGGTTAGCCACCTTCTCCAA
EW732005       <-- TCTTCACTAGCCAAATCTTTTGGTATATTAAGGTTAGCCACCTTCTCCAA
EX892484       --> ..................................................
FD553153       --> ..................................................
EX774891       --> ..................................................
EW737326       --> TCTTCACTAGCCAAATCTTTTGGTATATTAAGGTTAGCCACCTTCTCCAA
EW736378       --> TCTTCACTAGCCAAATCTTTTGGTATATTAAGGTTAGCCACCTTCTCCAA

               801    -    851
UN13257        --> CTCTCCAATCATCTCAATCCTCCTGAATGGAGGAGTGAAGTCGATTTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- CTCTCCAATCATCTCAATCCTCCTGAATGGAGGAGTGAAGTCGATTTCGA
FD556943       <-- CTCTCCAATCATCTCAATCCTCCTGAATGGAGGAGTGAAGTCGATTTCGG
EX888575       <-- CTCTCCAATCATCTCAATCCTCCTGAATGGAGGAGTGAAGTCGATTTCGA
EW732005       <-- CTCTCCAATCATCTCAATCCTCCTGAATGGAGGAGTGAAGTCGATTTCGA
EX892484       --> ..................................................
FD553153       --> ..................................................
EX774891       --> ..................................................
EW737326       --> CTCTCCAATCATCTCAATCCTCCTGAATGGAGGAGTGAAGTCGATTT...
EW736378       --> CTCTCCAATCATCTCAATCCTCCTGAAT......................

               851    -    901
UN13257        --> TTGGCTCCTTATCATACCCATTAGCATGATACTTGATCTTGTAACCACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW732654       <-- TTGGCTCCc.........................................
FD556943       <-- TTGGCTCCTTATCATACCCATTAGCATGATACTTGATCTTGTAACCACCT
EX888575       <-- TTGGCTCCTTATCATACCCAc.............................
EW732005       <-- TTGGCTCCc.........................................
EX892484       --> ..................................................
FD553153       --> ..................................................
EX774891       --> ..................................................
EW737326       --> ..................................................
EW736378       --> ..................................................

               901    -    951
UN13257        --> GTCAAC
                   ~~~~~~
EW732654       <-- ......
FD556943       <-- GTCAAC
EX888575       <-- ......
EW732005       <-- ......
EX892484       --> ......
FD553153       --> ......
EX774891       --> ......
EW737326       --> ......
EW736378       --> ......