RadishBase

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Alignment for radish unigene UN13295

               1      -     51
UN13295        --> GGAAGACTTAGACGCCGCTCCGTGATCTAAAGTTACTCCCCGGAGAA-AA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- ..................................................
EY904056       <-- ..................................................
EV531672       <-- ..................................................
FD975349       <-- ..................................................
FD574814       <-- ..................................................
FD935380       <-- ..................................................
EY911626       <-- ..................................................
EY895684       <-- ..................................................
FD961234       <-- ..................................................
EY904230       <-- ..................................................
EW714203       --> GGAAGACTTAGACGCCGCTCCGTGATCTAAAGTTACTCCCCGGAGAA-AA
FD965514       --> ...........ggGCCGCTC-GTGATCTAAAGTTACTCCCCGGAGAA-AA
FD979280       --> ...........ggGCCGCTCCGTGATCTAAAGTTACTCCCCGGAGAA-AA
EY915858       --> ..............ggGCTCCGTGATCTAAAGTTACTCCCCGGAGAA-AA
EY900038       --> ...............gggctCGTGATCTAAAGTTACTCCCCGGAGAA-AA
EY908556       --> ................ggctCGTGATCCAAAGTTGCTTCCCGGAGAAGAA
EV527417       --> ..................................................
EV552027       --> ..................................................
EY908339       --> ..................................................
FD551114       --> ..................................................
FD939201       --> ..................................................
EV528643       --> ..................................................

               51     -    101
UN13295        --> GAAGAAGAGAGTAACACAAAAATGGCGAGTAACGTACAGCTCTCCCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- ..................................................  Raphanus sativus var. oleiformis
EY904056       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531672       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD975349       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574814       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD935380       <-- ..................................................  Raphanus sativus var. oleiformis
EY911626       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895684       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD961234       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY904230       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714203       --> GAAGAAGAGAGTAACA--AAAATGGCGACTAACGTACAGCTCTCCCAGAA  Raphanus sativus var. oleiformis
FD965514       --> GAAGAAGAGAGTAACACAAAAATGGCGAGTAACGTACAGCTCTCCCAGAA  Raphanus raphanistrum subsp. maritimus
FD979280       --> GAAGAAGAGAGTAACA-AAAAATGGCGAGTAACGTACAGCTCTCCCAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915858       --> GAAGAAGAGAGTAACA--AAAATGGCGAGTAACGTACAGCTCTCCCAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900038       --> GAAGAAGAGAGTAACACAAAAATGGCGAGTAACGTACAGCTCTCCCAGAA  Raphanus raphanistrum subsp. maritimus
EY908556       --> GAAGAAGAGAGTAACACAAAAATGGCGAATAACGTACAGCTCTCCCAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527417       --> ......ggGAGTAACACAAAAATGGCGAGTAACGTACAGCTCTCCCAGAA  Raphanus raphanistrum subsp. maritimus
EV552027       --> .........................tGAGTAACGTACAGCTCTCCCAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908339       --> ................................................gA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551114       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939201       --> ..................................................  Raphanus sativus var. oleiformis
EV528643       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN13295        --> GGAATCTGACATCAAAATGATGTGTGCCGCTGAGGTTCACCTCGGTACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- ..................................................
EY904056       <-- ..................................................
EV531672       <-- ..................................................
FD975349       <-- ..................................................
FD574814       <-- ..................................................
FD935380       <-- ..................................................
EY911626       <-- ..................................................
EY895684       <-- ..................................................
FD961234       <-- ..................................................
EY904230       <-- ..................................................
EW714203       --> GGAATCTGATATCAAAATGATGTGTGCCGCTGAGGTTCACCTCGGTACCA
FD965514       --> GGAATCTGACATCAAAATGATGTGTGCCGCCGAGGTTCACCTCGGTACCA
FD979280       --> GGAATCTGACATCAAAATGATGTGTGCCGCTGAGGTTCACCTCGGTACCA
EY915858       --> GGAATCTGACATCAAAATGATGTGTGCCGCTGAGGTTCACCTCGGTACCA
EY900038       --> GGAATCTGACATCAAAATGATGTGTGCCGCTGAGGTTCACCTCGGTACCA
EY908556       --> GGAATCTGACATCAAAATGATGTGTGCCGCTGAGGTTCACCTCGGTACCA
EV527417       --> GGAATCTGACATCAAAATGATGTGTGCCGCTGAGGTTCACCTCGGTACCA
EV552027       --> GGAATCTGACATCAAAATGATGTGTGCCGCTGAGGTTCACCTCGGTACCA
EY908339       --> GGAATCTGACATCAAAATGATGTGTGCCGCTGAGGTTCACCTCGGTACCA
FD551114       --> ..................................................
FD939201       --> ..................................................
EV528643       --> ..................................................

               151    -    201
UN13295        --> AAAACTGCAATTACCAAATGGAGCGTTACGTCTTCAAGCGTCGCAACGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- ..................................................
EY904056       <-- ..................................................
EV531672       <-- ..................................................
FD975349       <-- ..................................................
FD574814       <-- ..................................................
FD935380       <-- ..................................................
EY911626       <-- ..................................................
EY895684       <-- ..................................................
FD961234       <-- ..................................................
EY904230       <-- ..................................................
EW714203       --> AAAACTGCAATTACCAAATGGAGCGTTACGTCTTCAAGCGTCGCAACGAT
FD965514       --> AAAACTGCAATTACCAAATGGAGCGTTACGTCTTCAAGCGACGCAACGAT
FD979280       --> AAAACTGCAATTACCAAATGGAGCGTTACGTCTTCAAGCGTCGCAACGAT
EY915858       --> AAAACTGCAATTACCAAATGGAGCGTTACGTCTTCAAGCGTCGCAACGAT
EY900038       --> AAAACTGCAATTACCAAATGGAGCGTTACGTCTTCAAGCGACGCAACGAT
EY908556       --> AAAACTGCAATTACCAAATGGAGCGTTACGTCTTCAAGCGTCGCAACGAT
EV527417       --> AAAACTGCAATTACCAAATGGAGCGTTACGTCTTCAAGCGACGCAACGAT
EV552027       --> AAAACTGCAATTACCAAATGGAGCGTTACGTCTTCAAGCGTCGCAACGAT
EY908339       --> AAAACTGCAATTACCAAATGGAGCGTTACGTCTTCAAGCGTCGCAACGAT
FD551114       --> ..................................................
FD939201       --> ..................................................
EV528643       --> ..................................................

               201    -    251
UN13295        --> GGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- ...........................ACATGGGAGAAGT-GCAGATGGC
EY904056       <-- ..................................................
EV531672       <-- ..................................................
FD975349       <-- ..................................................
FD574814       <-- ..................................................
FD935380       <-- ..................................................
EY911626       <-- ..................................................
EY895684       <-- ..................................................
FD961234       <-- ..................................................
EY904230       <-- ..................................................
EW714203       --> GGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGC
FD965514       --> GGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGC
FD979280       --> GGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGC
EY915858       --> GGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGC
EY900038       --> GGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGC
EY908556       --> GGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGC
EV527417       --> GGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGC
EV552027       --> GGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGC
EY908339       --> GGTATATATATCTTCAACCTTGGGAAGACATGGGAGAAGTTGCAGATGGC
FD551114       --> .............................ATGGGAGAAGTTGCAGATGGC
FD939201       --> ..................................................
EV528643       --> ..................................................

               251    -    301
UN13295        --> TGCTAGGGTTATTGTTGCTATTGAGAACCCACAAGACATTATTGTTCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- TGCTAGGGTTATCGTTGCTATTGAGAACCCACAAGACATTATTGTTCAGT
EY904056       <-- ...................ATTGAGAACCCACAAGACATTATTGTTCAGT
EV531672       <-- ..................................................
FD975349       <-- ..................................................
FD574814       <-- ..................................................
FD935380       <-- ..................................................
EY911626       <-- ..................................................
EY895684       <-- ..................................................
FD961234       <-- ..................................................
EY904230       <-- ..................................................
EW714203       --> TGCTAGGGTTATCGTTGCTATTGAGAACCCACAAGACATTATTGTTCAGT
FD965514       --> TGCTAGGGTTATTGTTGCTATTGAGAACCCACAAGACATTATTGTTCAGT
FD979280       --> TGCTAGGGTTATTGTTGCTATTGAGAACCCACAAGACATTATTGTTCAGT
EY915858       --> TGCTAGGGTTATTGTTGGTATTGAGAACCCACAAGACATTATTGTTCAGT
EY900038       --> TGCTAG--TTATTGTTGCTATTGAGAACCCACAAGACATTATTGTTCAGT
EY908556       --> TGCTAGGGTTATTGTTGCTATTGAGAACCCACAAGACATTATTGTTCAGT
EV527417       --> TGCTAGGGTTATTGTTGCTATTGAGAACCCACAAGACATTATTGTTCAGT
EV552027       --> TGCTAGGGTTATTGTTGCTATTGAGAACCCACAAGACATTATTGTTCAGT
EY908339       --> TGCTAGGGTTATTGTTGCTATTGAGAACCCACAAGACATTATT.......
FD551114       --> TGCTAGGGTTATTGTGTCTATTGAGAACCCACAAGACATTATTGTTCAGT
FD939201       --> ....................gTGAGAACCCACAAGACGTTATTGTTCAGT
EV528643       --> ..................................................

               301    -    351
UN13295        --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- CTGCTAGACTTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT  Raphanus sativus var. oleiformis
EY904056       <-- CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531672       <-- ......GACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTACACT  Raphanus raphanistrum subsp. maritimus
FD975349       <-- .................CAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574814       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD935380       <-- ..................................................  Raphanus sativus var. oleiformis
EY911626       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895684       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD961234       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY904230       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714203       --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT  Raphanus sativus var. oleiformis
FD965514       --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTACACT  Raphanus raphanistrum subsp. maritimus
FD979280       --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915858       --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900038       --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTACACT  Raphanus raphanistrum subsp. maritimus
EY908556       --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527417       --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTACACT  Raphanus raphanistrum subsp. maritimus
EV552027       --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908339       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551114       --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939201       --> CTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACT  Raphanus sativus var. oleiformis
EV528643       --> .....gGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTACACT  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN13295        --> GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
EY904056       <-- GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
EV531672       <-- GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
FD975349       <-- GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
FD574814       <-- ..................................................
FD935380       <-- ..................................................
EY911626       <-- ..................................................
EY895684       <-- ..................................................
FD961234       <-- ..................................................
EY904230       <-- ..................................................
EW714203       --> GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
FD965514       --> GGTGCTAACGCCATTTCTGGAAGACACACTCCTGGTACTTTCACCAATCA
FD979280       --> GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
EY915858       --> GGTGCTAACGCCATTGCTGGAAGGCATACTCCTGGTACTTTCACCAATCA
EY900038       --> GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
EY908556       --> GGTGCTAACGCCATTACTGGAAGACACACTCCTGGTACTTTCACCAATCA
EV527417       --> GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
EV552027       --> GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
EY908339       --> ..................................................
FD551114       --> GGTGCCAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA
FD939201       --> GGTGCTAACGCCATTGCTGGAAGGCATACTCCTGGTACTTTCACCAATCA
EV528643       --> GGTGCTAACGCCATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCA

               401    -    451
UN13295        --> GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
EY904056       <-- GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
EV531672       <-- GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACACTA
FD975349       <-- GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
FD574814       <-- .........................................CTGACCCTA
FD935380       <-- ..................................................
EY911626       <-- ..................................................
EY895684       <-- ..................................................
FD961234       <-- ..................................................
EY904230       <-- ..................................................
EW714203       --> GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
FD965514       --> GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
FD979280       --> GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
EY915858       --> GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
EY900038       --> GATGCAGACTTCCTTCAGTGAGCCTAGTTTGCTCATTCTTACTGACCCTA
EY908556       --> GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
EV527417       --> GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACACTA
EV552027       --> GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
EY908339       --> ..................................................
FD551114       --> GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
FD939201       --> GATGCAGACTTCCTTCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA
EV528643       --> GATGCAGACTTCCTCCAGTGAGCCTAGGTTGCTCATTCTTACTGACCCTA

               451    -    501
UN13295        --> GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAGACATCCCAATC
EY904056       <-- GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC
EV531672       <-- GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC
FD975349       <-- GGACTGACCATCAGCCAATCAAAGAAGGTGCTTTGGGAAACATCCCAATC
FD574814       <-- GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC
FD935380       <-- ............................TGCTTTGGGAAACATCCCAATC
EY911626       <-- ..................................................
EY895684       <-- ..................................................
FD961234       <-- ..................................................
EY904230       <-- ..................................................
EW714203       --> GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAGACATCCCAATC
FD965514       --> GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC
FD979280       --> GGACTGACCATCAGCCAATCAAAGAAGGTGCTTTGGGAAACATCCCAATC
EY915858       --> GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC
EY900038       --> GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC
EY908556       --> GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC
EV527417       --> GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC
EV552027       --> GGACTGACCATCAGCCAATCAAAGAAGGTGCTTTGGGAAACATCCCAATC
EY908339       --> ..................................................
FD551114       --> GGACTGACCATCAGCCAATCAAGGga........................
FD939201       --> GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC
EV528643       --> GGACTGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATCCCAATC

               501    -    551
UN13295        --> ATTGCTTTCTGTGACACTGACTCTCCCATGAGATTTGTCGACATTGGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- ATTGCTTTCTGTGACACTGACTCTCCAATGAGATTTGTCGACATTGGGAT  Raphanus sativus var. oleiformis
EY904056       <-- ATTGCTTTCTGTGACACTGACTCTCCCATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531672       <-- ATTGCTTTCTGTGACACAGACTCTCCAATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. maritimus
FD975349       <-- ATTGCTTTCTGTGACACTGACTCTCCCATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574814       <-- ATTGCTTTCTGTGACACTGACTCTCCCATGAGATTTGTCGACATTGGGAT  Raphanus sativus cv Early Scarlet Globe
FD935380       <-- ATTGCTTTCTGTGACACTGACTCTCCCATGAGATTTGTCGACATTGGGAT  Raphanus sativus var. oleiformis
EY911626       <-- ..............CACTGACTCTCCCATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895684       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD961234       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY904230       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714203       --> ATTGCTTTCTGTGACACTGACTCTCCAATGAGATTTGTCGACATTGGGAT  Raphanus sativus var. oleiformis
FD965514       --> ATTGCTTTCTGTGACACAGACTCTCCAATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. maritimus
FD979280       --> ATTGCTTTCTGTGACACTGACTCTCCCATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915858       --> ATTGCTTTCTGTGACACTGACTCTCCCATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900038       --> ATTGCTTTCTGTGACACAGACTCTCCAATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. maritimus
EY908556       --> ATTGCTTTCTGTGACACTGACTCTCCCATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527417       --> ATTGCTTTCTGTGACACAGACTCTCCAATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. maritimus
EV552027       --> ATTGCTTTCTGTGACACTGACTCTCCCATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908339       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551114       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939201       --> ATTGCTTTCTGTGACACTGACTCTCCCATGAGATTTGTCGACATTGGGAT  Raphanus sativus var. oleiformis
EV528643       --> ATTGCTTTCTGTGACACAGACTCTCCAATGAGATTTGTCGACATTGGGAT  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN13295        --> CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
EY904056       <-- CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
EV531672       <-- CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
FD975349       <-- CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
FD574814       <-- CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
FD935380       <-- CCCTGCTAACAACAAGGGAAAACACAGCATTGGTTGTCTTTTCTGGCTTC
EY911626       <-- CCCTGCTAACAACAAGGGAAAACACAGCATTGGTTGTCTTTTCTGGCTTC
EY895684       <-- ..................................................
FD961234       <-- ..................................................
EY904230       <-- ..................................................
EW714203       --> CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
FD965514       --> CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
FD979280       --> CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
EY915858       --> CCCTGCTAACAACAAGGGAAAACACAGCATTGGTTGTCTTTTCTGGCTTC
EY900038       --> CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
EY908556       --> CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
EV527417       --> CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
EV552027       --> CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC
EY908339       --> ..................................................
FD551114       --> ..................................................
FD939201       --> CCCTGCTAACAACAAGGGAAAACACAGCATTGGTTGTCTTTTCTGGCTTC
EV528643       --> CCCTGCTAACAACAAGGGAAAGCACAGCATTGGTTGTCTTTTCTGGCTTC

               601    -    651
UN13295        --> TTGCTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- TCGCTCGCATGGTCCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus sativus var. oleiformis
EY904056       <-- TTGCTCGCATGGTCCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531672       <-- TTGCTCGCATGGT---TCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. maritimus
FD975349       <-- TTGCTCGCATGGTTCTTCAGATGCGTGAAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574814       <-- TTGCTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus sativus cv Early Scarlet Globe
FD935380       <-- TTGCTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus sativus var. oleiformis
EY911626       <-- TTGCTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895684       <-- .................CAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. maritimus
FD961234       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY904230       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714203       --> TCGCTCGCATGGTCCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus sativus var. oleiformis
FD965514       --> TTGCTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. maritimus
FD979280       --> TTGCTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915858       --> TTGCTCGCATGGTTCTT.................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900038       --> TTGCTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. maritimus
EY908556       --> TTGCTCGCATGGTCCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527417       --> TTGCTCGCATGGTTC---AGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. maritimus
EV552027       --> TTGCTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908339       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551114       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939201       --> TTGCTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus sativus var. oleiformis
EV528643       --> TTGCTCGCATGGTTCTTCAGATGCGTGGAACCATCCGTCCTGCACAAAAG  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN13295        --> TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAGGCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAGGCTAA  Raphanus sativus var. oleiformis
EY904056       <-- TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531672       <-- TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAGGAGGCTAA  Raphanus raphanistrum subsp. maritimus
FD975349       <-- TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAGGCTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574814       <-- TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAGGCTAA  Raphanus sativus cv Early Scarlet Globe
FD935380       <-- TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAGGCTAA  Raphanus sativus var. oleiformis
EY911626       <-- TGGGATGTCATGGTGGACCTGTTTTTTTACAGAGAGCCCGAAGAGGCTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895684       <-- TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAGGAGGCTAA  Raphanus raphanistrum subsp. maritimus
FD961234       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY904230       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714203       --> TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAGGCTAA  Raphanus sativus var. oleiformis
FD965514       --> TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAGGAG.....  Raphanus raphanistrum subsp. maritimus
FD979280       --> TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAG-CTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915858       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900038       --> TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAGGAGGCTAA  Raphanus raphanistrum subsp. maritimus
EY908556       --> TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAG-CTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527417       --> TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAGGAGGCTAA  Raphanus raphanistrum subsp. maritimus
EV552027       --> TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAGGCTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908339       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551114       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939201       --> TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAAGAGGCTAA  Raphanus sativus var. oleiformis
EV528643       --> TGGGATGTCATGGTGGACCTGTTCTTTTACAGAGAGCCCGAGGAGGCTAA  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN13295        --> GCAATCTGAAGACGAAGAAGCTGCACCTCTGGCAGATTTTGGACTCCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- GCAATCTGAAGACGAAGAGGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus sativus var. oleiformis
EY904056       <-- GCAATCTGAAGACGAAGAAGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531672       <-- GCAATCTGAAGACGAAGAAGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. maritimus
FD975349       <-- GCAACCTGAAGACGAAGAAGCTGCACCTCTTGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574814       <-- GCAATCTGAAGACGAAGAAGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus sativus cv Early Scarlet Globe
FD935380       <-- GCAATCTGAAGACGAAGAGGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus sativus var. oleiformis
EY911626       <-- GCAATCTGAAGACGAAGAGGCTGCACTTCTGGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895684       <-- GCAATCTGAAGACGAAGAAGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. maritimus
FD961234       <-- ..................AGCTGCACCTTTGGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. maritimus
EY904230       <-- .....................TGCACTTTTGGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714203       --> GCAATCTGAAGACGAAGAGGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus sativus var. oleiformis
FD965514       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD979280       --> GCAACCTGA-GACGAga.................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915858       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900038       --> GCAATCTGAAGACGAAGAAGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. maritimus
EY908556       --> GCAATCTGAAGACGAAGAAGCTGCACCTCTGGCAGATTT-GGACTCC-TG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527417       --> GCAATCTGAAGACGAAGAAGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. maritimus
EV552027       --> GCAACCTGAAGACGAAGAAGCTGCACCTCTTGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908339       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551114       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939201       --> GCAATCTGAAGACGAAGAGGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus sativus var. oleiformis
EV528643       --> GCAATCTGAAGACGAAGAAGCTGCACCTCTGGCAGATTTTGGACTCCCTG  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN13295        --> CACCTGAATATGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- CACCTGAATACGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus sativus var. oleiformis
EY904056       <-- CACCTGAATATGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531672       <-- CACCTGAGTATGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus raphanistrum subsp. maritimus
FD975349       <-- CACCTGAATATGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574814       <-- CACCTGAATATGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus sativus cv Early Scarlet Globe
FD935380       <-- CACCTGAATACGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus sativus var. oleiformis
EY911626       <-- CACCTGAATACGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895684       <-- CACCTGAGTATGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus raphanistrum subsp. maritimus
FD961234       <-- CACCTGAGTATGGAGCTGCCGGTGGA-AATGGACCACTGCTGAGATTCCT  Raphanus raphanistrum subsp. maritimus
EY904230       <-- CACCTGAATATGGAGCTGCCGGTGGAGAATGGACCACTGTTCAGATTCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714203       --> CACCTGAA..........................................  Raphanus sativus var. oleiformis
FD965514       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD979280       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915858       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900038       --> CACCTGAGTATGGAGCTG................................  Raphanus raphanistrum subsp. maritimus
EY908556       --> C-CCTGAATATGGAG...................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527417       --> CACCTGAGTATGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus raphanistrum subsp. maritimus
EV552027       --> CACCTGAATATGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908339       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551114       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939201       --> CACCTGAATACGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus sativus var. oleiformis
EV528643       --> CACCTGAGTATGGAGCTGCCGGTGGAGAATGGACCACTGCTCAGATTCCT  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN13295        --> GATGCTTCGTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- GATGCCTCTTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGT  Raphanus sativus var. oleiformis
EY904056       <-- GATGCTTCGTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531672       <-- GATGCTTCGTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGC  Raphanus raphanistrum subsp. maritimus
FD975349       <-- GATGCTTCTTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574814       <-- GATGCTTCGTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGC  Raphanus sativus cv Early Scarlet Globe
FD935380       <-- GATGCCTCTTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGT  Raphanus sativus var. oleiformis
EY911626       <-- GATGCCTCTTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895684       <-- GATGCTTCGTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGC  Raphanus raphanistrum subsp. maritimus
FD961234       <-- GATGCTTCGTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGC  Raphanus raphanistrum subsp. maritimus
EY904230       <-- GATGCTTCGTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714203       --> ..................................................  Raphanus sativus var. oleiformis
FD965514       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD979280       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915858       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900038       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY908556       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527417       --> GATGCTTCGTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGC  Raphanus raphanistrum subsp. maritimus
EV552027       --> GATGCTTCtt........................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908339       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551114       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939201       --> GATGCCTCTTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGT  Raphanus sativus var. oleiformis
EV528643       --> GATGCTTCGTGGACAGGAGATGCTCAGCAGCCAATCAGTGCTGCTCCTGC  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN13295        --> AGCTGGTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- AGCTGGTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
EY904056       <-- AGCGGCTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
EV531672       <-- AGCTGGTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
FD975349       <-- AGCTGGTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
FD574814       <-- AGCTGCTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
FD935380       <-- AGCTGGTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
EY911626       <-- AGCTGGTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
EY895684       <-- AGCTGGTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
FD961234       <-- AGCTGGTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
EY904230       <-- AGCGGCTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG
EW714203       --> ..................................................
FD965514       --> ..................................................
FD979280       --> ..................................................
EY915858       --> ..................................................
EY900038       --> ..................................................
EY908556       --> ..................................................
EV527417       --> AGCTGGTTCTTGGAATGATGCCAGTGCTGCT...................
EV552027       --> ..................................................
EY908339       --> ..................................................
FD551114       --> ..................................................
FD939201       --> AGCTG.............................................
EV528643       --> AGCTGGTTCTTGGAATGATGCCAGTGCTGCTCCAGGTGCAGATGGATGGG

               901    -    951
UN13295        --> ACACAGCTGTGCCACCCCCAGCAGCAGTTCCAGCTGCTGGTTGGGATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- ACACAGCTGTGCCACCCCCAGCAGCAGTTCCAGCTGCTGGTTGGGATTAA  Raphanus sativus var. oleiformis
EY904056       <-- ACACAGCTGTGCCACCCCCAGCAGCAGTTCCAGCTGCTGGTTGGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531672       <-- ACACAGCTGTGCCACCTCCAGCAGCAGTTCCAGCTGCTGGTTGGGATTAA  Raphanus raphanistrum subsp. maritimus
FD975349       <-- ACACAGCTGTGCCACCCCCAGCAGCAGCTCCAGCTGCTGGTTGGGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574814       <-- ACACAGCTGTGCCACCGCCAGCAGCAGCTCCAGCTGCTGGTTGGGATTAA  Raphanus sativus cv Early Scarlet Globe
FD935380       <-- ACACAGCTGTGCCACCCCCAGCAGCAGTTCCAGCTGCTGGTTGGGATTAA  Raphanus sativus var. oleiformis
EY911626       <-- ACACAGCTGTGCCACCCCCAGCAGCAGTTCCAGCTGCTGGTTGGGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895684       <-- ACACAGCTGTGCCACCTCCAGCAGCAGTTCCAGCTGCTGGTTGGGATTAA  Raphanus raphanistrum subsp. maritimus
FD961234       <-- ACACAGCTGTGCCACCTCCAGCAGCAGTTCCAGCTGCTGGTTGGGATTAA  Raphanus raphanistrum subsp. maritimus
EY904230       <-- ACACAGCTGTGCCACCCCCAGCAGCAGTTCCAGCTGCTGGTTGGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714203       --> ..................................................  Raphanus sativus var. oleiformis
FD965514       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD979280       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915858       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900038       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY908556       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527417       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV552027       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908339       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551114       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939201       --> ..................................................  Raphanus sativus var. oleiformis
EV528643       --> ACACAGCTGTGCCACCTCCAGCAGCAGTTCCAGCTGCTGGTTGGGATTAA  Raphanus raphanistrum subsp. maritimus

               951    -   1001
UN13295        --> -TTTTTTTTGGTCATGTTTGAGATT-CAAGAGTTGTAGCTTCTTGTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- -TTTTTTTGGTTTATGTTTGAGATT-CAAGAGTTGTAGCTTCTTGTTTTC  Raphanus sativus var. oleiformis
EY904056       <-- AACTTTTTTGGTCATGTTTGAGATTTCAAGAGTTGTAGCTTCTTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531672       <-- -TTTTTTT-GGTCATGTTTGAGATT-CAAGAGTTGTAGCTTCTTGTTTTC  Raphanus raphanistrum subsp. maritimus
FD975349       <-- -ATTTTTTTGGTCATGTTTGAGATT-CAAGAGTTATAGCTTCTTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574814       <-- -TTTTTTTTGGTCATGTTTGAGATT-CAAGAGTTGTAGCTTCTTGTTTTC  Raphanus sativus cv Early Scarlet Globe
FD935380       <-- -TTTTTTTGGTTTATGTTTGAGATT-CAAGAGTTGTAGCTTCTTGTTTTC  Raphanus sativus var. oleiformis
EY911626       <-- -TTTTTTTGGTTTATGTTTGAGATT-CAAGAGTTGTAGCTTCTTGTTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895684       <-- -TTTTTTT-GGTCATGTTTGAGATT-CAAGAGTTGTAGCTTCTTGTTTTC  Raphanus raphanistrum subsp. maritimus
FD961234       <-- -TTTTTTT-GGTCATGTTTGAGATT-CAAGAGTTGTAGCTTTTTGTTTTT  Raphanus raphanistrum subsp. maritimus
EY904230       <-- AACTTTTTTGGTCATGTTTGAGATTTCAAGAGTTGTAGCTTTTTGTTT..  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714203       --> ..................................................  Raphanus sativus var. oleiformis
FD965514       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD979280       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915858       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900038       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY908556       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527417       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV552027       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908339       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551114       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939201       --> ..................................................  Raphanus sativus var. oleiformis
EV528643       --> -TTTTTTT-GGTCATGTTTGAGATT-CAAGAGTTGTAGCTTCTTGTTTTC  Raphanus raphanistrum subsp. maritimus

               1001   -   1051
UN13295        --> TTTTCAAATTGTTTCTCATTAAGACCCTTT-AGATATCAATTTTGTGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- TTTTCAAATTGTTTCTCATTAAGACCCTTT-AGATATCAATTTTGTGGCT
EY904056       <-- TTTTCAA-TTGTTTCTCATTAAGACCCTTTTAGATATCAATTTTGTGGCT
EV531672       <-- TTTTCAAATTGTTTCTCATTAAGACCCTTT-AGATATCAATTTTGTGGCT
FD975349       <-- TTTTCAAATTGTTTCTCATTAAGACGCTTT-AGATATCAATTTTGTGGCT
FD574814       <-- TTTTCAA-CTG-TTCTCATTAAGACCCTTT-AGATATCAATTTTGTGGCT
FD935380       <-- TTTTCAAATTGTTTCTCATTAAGACCCTTT-AGATATCAATTTTGTGGCT
EY911626       <-- TTTTCAAATTGTTTCTCATTAAGACCCTTT-AGATATCAATTTTGTGGCT
EY895684       <-- TTTTCAAATTGTTTCTCATTAAGACCCTTT-AGATATCAATTTTGTGGCT
FD961234       <-- TTTTCAAATTGTTTTTCATTAAGACCCTTT-AGATATCAATTTTGTGGCT
EY904230       <-- ..................................................
EW714203       --> ..................................................
FD965514       --> ..................................................
FD979280       --> ..................................................
EY915858       --> ..................................................
EY900038       --> ..................................................
EY908556       --> ..................................................
EV527417       --> ..................................................
EV552027       --> ..................................................
EY908339       --> ..................................................
FD551114       --> ..................................................
FD939201       --> ..................................................
EV528643       --> TTTTCAAATTGTTTCTCATTAAGACCCTTT-AGATATCAATTTTGTGGCT

               1051   -   1101
UN13295        --> TTTCTTGTTGCTTTGAACTGAGTTTCAACTAAATTATCTCTAATGGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- TTTCTTGTTGCTTTGAACTGAGTTTCAACTAAATTATCTCTAATGGCATC
EY904056       <-- TTTCTTGTTACTTTGAATTGAATTTCAACTAAATTATCTCT.........
EV531672       <-- TTTCTTGTTGCTTTGAACTGAGTTTCAACTAAATTATCTCc.........
FD975349       <-- TTTCTGGTTGCTTTGAATTGAATTTCAACTTAATTATCTTTAATGGC...
FD574814       <-- TTTCTTGTTGCTTTGAATTGAATTTCAACTAAATTATCTCTAATGGCATC
FD935380       <-- TTTCTTGTTGCTTTGAACTGAGTTTCAACTAAATTATCTCTAATGGCATC
EY911626       <-- TTTCTTGTTGCTTTGAACTGAGTTTCAACTAAATTATCTCTAATGGCATC
EY895684       <-- TTTCTTGCTGCTTTGAACTGAGTTTCAACTAAATTATCTCTAATGGCATC
FD961234       <-- TTTCTTGTTGCTTTGAACTGAGTTTCAACTAAATTATCTTTAATGGCATT
EY904230       <-- ..................................................
EW714203       --> ..................................................
FD965514       --> ..................................................
FD979280       --> ..................................................
EY915858       --> ..................................................
EY900038       --> ..................................................
EY908556       --> ..................................................
EV527417       --> ..................................................
EV552027       --> ..................................................
EY908339       --> ..................................................
FD551114       --> ..................................................
FD939201       --> ..................................................
EV528643       --> TTTCTTGTTGCTTTGAACTGAGTTTC........................

               1101   -   1151
UN13295        --> TGAGTTTTTACAAAGATTCTCTACATTATGTTTTTTAGATCAGTAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- TGAGTTTTTAC.......................................
EY904056       <-- ..................................................
EV531672       <-- ..................................................
FD975349       <-- ..................................................
FD574814       <-- TGAGTTTTTttt......................................
FD935380       <-- TGAGTTTTTACAAAGATTCTCTACATTATGTGTTGTAGATCAGTAAGAGG
EY911626       <-- TGAGTTTTTAC.......................................
EY895684       <-- TGAGTTTTTACAAAGATTCTCTACATTATGTTTTTTAGATCAATAAGAGC
FD961234       <-- TGAGTTTTTACAAAGATTCTTTACATTAT.....................
EY904230       <-- ..................................................
EW714203       --> ..................................................
FD965514       --> ..................................................
FD979280       --> ..................................................
EY915858       --> ..................................................
EY900038       --> ..................................................
EY908556       --> ..................................................
EV527417       --> ..................................................
EV552027       --> ..................................................
EY908339       --> ..................................................
FD551114       --> ..................................................
FD939201       --> ..................................................
EV528643       --> ..................................................

               1151   -   1201
UN13295        --> TT-ATGATCTTTTAATATATTGGTTAACTTAGATTACAAGAACGATTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- ..................................................
EY904056       <-- ..................................................
EV531672       <-- ..................................................
FD975349       <-- ..................................................
FD574814       <-- ..................................................
FD935380       <-- TTTATGATCTTTTAATATATTGGTTAACTTAGAct...............
EY911626       <-- ..................................................
EY895684       <-- TT-ATGATCTTTTAATATATGGGTTAACTTAGATTACAAGAACGATTGTA
FD961234       <-- ..................................................
EY904230       <-- ..................................................
EW714203       --> ..................................................
FD965514       --> ..................................................
FD979280       --> ..................................................
EY915858       --> ..................................................
EY900038       --> ..................................................
EY908556       --> ..................................................
EV527417       --> ..................................................
EV552027       --> ..................................................
EY908339       --> ..................................................
FD551114       --> ..................................................
FD939201       --> ..................................................
EV528643       --> ..................................................

               1201   -   1251
UN13295        --> CAGTTTTGAAACACTTTTATCTACAAGTGAAAGAAACTCTACTGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718896       <-- ................................................
EY904056       <-- ................................................
EV531672       <-- ................................................
FD975349       <-- ................................................
FD574814       <-- ................................................
FD935380       <-- ................................................
EY911626       <-- ................................................
EY895684       <-- CAGTTTTGAAACACTTTTATCTACAAGTGAAAGAAACTCTACTGCATC
FD961234       <-- ................................................
EY904230       <-- ................................................
EW714203       --> ................................................
FD965514       --> ................................................
FD979280       --> ................................................
EY915858       --> ................................................
EY900038       --> ................................................
EY908556       --> ................................................
EV527417       --> ................................................
EV552027       --> ................................................
EY908339       --> ................................................
FD551114       --> ................................................
FD939201       --> ................................................
EV528643       --> ................................................