Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN13300

               1      -     51
UN13300        --> GGGAGGAAGAGGTTTTGGCGACCGTGGCGGTAGAGGCATGAGAGGAGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- ..................................................
EY910656       <-- ..................................................
EX768948       <-- ..................................................
EV572003       <-- ..................................................
FD528810       <-- ..................................................
EV545386       <-- ..................................................
EY918414       <-- ..................................................
EW727098       <-- ..................................................
EW727396       <-- ..................................................
FD531979       <-- ..................................................
EY905098       --> GGGAGGAAGAGGTTTTGGCGACCGTGGCGGTAGAGGCATGAGAGGAGGTA
FD561589       --> ..................................................
EW724204       --> ..................................................
FD939552       --> ..................................................
EY914655       --> ..................................................
EY922452       --> ..................................................
FD542309       --> ..................................................
EV566991       --> ..................................................
EV550024       --> ..................................................
EX765155       --> ..................................................
FD532293       --> ..................................................
EY897495       --> ..................................................
EW722534       --> ..................................................
EW722445       --> ..................................................
FD536538       --> ..................................................
FD964643       --> ..................................................

               51     -    101
UN13300        --> GAGGAGGAGATCGTGGTCGCCGCGGCAGAGGAACACCCGGAGGACGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- ..................................................
EY910656       <-- ..................................................
EX768948       <-- ..................................................
EV572003       <-- ..................................................
FD528810       <-- ..................................................
EV545386       <-- ..................................................
EY918414       <-- ..................................................
EW727098       <-- ..................................................
EW727396       <-- ..................................................
FD531979       <-- ..................................................
EY905098       --> GAGGAGGAGATCGTGGTCGCCGCGGCAGAGGAACACCCGGAGGACGTGGC
FD561589       --> ..................................................
EW724204       --> ..................................................
FD939552       --> ..................................................
EY914655       --> ..................................................
EY922452       --> ..................................................
FD542309       --> ..................................................
EV566991       --> ..................................................
EV550024       --> ..................................................
EX765155       --> ..................................................
FD532293       --> ..................................................
EY897495       --> ..................................................
EW722534       --> ..................................................
EW722445       --> ..................................................
FD536538       --> ..................................................
FD964643       --> ..................................................

               101    -    151
UN13300        --> GGAATGAAGGGAGGTAGCAAGGTGATTGTAGAGCCACACAGACACGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- ..................................................
EY910656       <-- ..................................................
EX768948       <-- ..................................................
EV572003       <-- ..................................................
FD528810       <-- ..................................................
EV545386       <-- ..................................................
EY918414       <-- ..................................................
EW727098       <-- ..................................................
EW727396       <-- ..................................................
FD531979       <-- ..................................................
EY905098       --> GGAATGAAGGGAGGTAGCAAGGTGATTGTAGAGCCACACAGACACGCTGG
FD561589       --> ............GGTAGCAAGGTGATTGTAGAGCCACACAGACACGCTGG
EW724204       --> ...........ggtTAGCAAGGTGATTGTAGAGCCACACAGACACGCTGG
FD939552       --> ..................................................
EY914655       --> ..................................................
EY922452       --> ..................................................
FD542309       --> ..................................................
EV566991       --> ..................................................
EV550024       --> ..................................................
EX765155       --> ..................................................
FD532293       --> ..................................................
EY897495       --> ..................................................
EW722534       --> ..................................................
EW722445       --> ..................................................
FD536538       --> ..................................................
FD964643       --> ..................................................

               151    -    201
UN13300        --> AGTGTTTATTGCAAAGGGTAAAGAGGACGCTCTCGTCACTAAGAACTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- .....tttTTGCAAAGAGTAAAGAGGACGCTCTCGTCACTAAGAACTTG-
EY910656       <-- ....................................gACTAAGAACTTGG
EX768948       <-- ..................................................
EV572003       <-- ..................................................
FD528810       <-- ..................................................
EV545386       <-- ..................................................
EY918414       <-- ..................................................
EW727098       <-- ..................................................
EW727396       <-- ..................................................
FD531979       <-- ..................................................
EY905098       --> AGTGTTTATTGCAAAGGGTAAAGAGGATGCTCTTGTCACTAAGAACTTGG
FD561589       --> AGTGTTTATTGCAAAGGGTAAAGAGGACGCTCTCGTCACTAAGAACTTGG
EW724204       --> AGTGTTTATTGCAAAGGGTAAAGAGGACGCTCTCGTCACTAAGAACTTGG
FD939552       --> ..........GCAAAGGGTAAAGGGGACGCTCTCGTCACTAAGAACTTGG
EY914655       --> ....................................gACTAAGAACTTGG
EY922452       --> ....................................gACTAAGAACTTGG
FD542309       --> ..................................................
EV566991       --> ..................................................
EV550024       --> ..................................................
EX765155       --> ..................................................
FD532293       --> ..................................................
EY897495       --> ..................................................
EW722534       --> ..................................................
EW722445       --> ..................................................
FD536538       --> ..................................................
FD964643       --> ..................................................

               201    -    251
UN13300        --> TTCCTGGTGAAGCTGTTTACAACGAGAAGAGAATCTCTGTTCAGAATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- TTCCTGGTGAAGCTGTTTACAACGAGAAGAGA-TCTCTGTTCAGAATGAA
EY910656       <-- TTCCTGGTGAAGCTGTTTACAACGAGAAGAGAATCTCTGTTCAGAATGAA
EX768948       <-- .............................gGAATCTCTGTTCAGAATGAA
EV572003       <-- ..................................................
FD528810       <-- ..................................................
EV545386       <-- ..................................................
EY918414       <-- ..................................................
EW727098       <-- ..................................................
EW727396       <-- ..................................................
FD531979       <-- ..................................................
EY905098       --> TCCCTGGTGAAGCTGTTTACAACGAGAAGAGAATCTCTGTTCAGAATGAA
FD561589       --> TTCCTGGTGAAGCTGTTTACAACGAGAAGAGAATCTCTGTTCAGAATGAA
EW724204       --> TTCCTGGTGAAGCTGTTTACAACGAGAAGAGAATCTCTGTTCAGAATGAA
FD939552       --> TTCCTGGTGAAGCTGTTTACAACGAGAAGAGAATCTCTGTTCAGAATGAA
EY914655       --> TTCCTGGTGAAGCTGTTTACAACGAGAAGAGAATCTCTGTTCAGAATGAA
EY922452       --> TTCCTGGTGAAGCTGTTTACAACGAGAAGAGAATCTCTGTTCAGAATGAA
FD542309       --> ............CTGTTTACAACGAGAAGAGAATCTCTGTTCAGAATGAA
EV566991       --> .....................gCGAGAAGAGAATCTCTGTTCAGAATGAA
EV550024       --> .............................gGAATCTCTGTTCAGAATGAA
EX765155       --> .............................gGAATCTCTGTTCAGAATGAA
FD532293       --> ..................................................
EY897495       --> ..................................................
EW722534       --> ..................................................
EW722445       --> ..................................................
FD536538       --> ..................................................
FD964643       --> ..................................................

               251    -    301
UN13300        --> GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
EY910656       <-- GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
EX768948       <-- GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
EV572003       <-- ...........................TGGAATCCTTTCCGTTCTAAGTT
FD528810       <-- .......................................gGTTCTAAGTT
EV545386       <-- ..................................................
EY918414       <-- ..................................................
EW727098       <-- ..................................................
EW727396       <-- ..................................................
FD531979       <-- ..................................................
EY905098       --> GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
FD561589       --> GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
EW724204       --> GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
FD939552       --> GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
EY914655       --> GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
EY922452       --> GATGGAACCAAGACTGAATGCAGGGTGTGGAATCCTTTCCGTTCTAAGTT
FD542309       --> GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
EV566991       --> GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
EV550024       --> GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
EX765155       --> GATGGAACCAAGACTGAATACAGGGTGTGGAATCCTTTCCGTTCTAAGTT
FD532293       --> .......................................gGTTCTAAGTT
EY897495       --> ..................................................
EW722534       --> ..................................................
EW722445       --> ..................................................
FD536538       --> ..................................................
FD964643       --> ..................................................

               301    -    351
UN13300        --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
EY910656       <-- GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
EX768948       <-- GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
EV572003       <-- GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
FD528810       <-- GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
EV545386       <-- .....................TGTTGATCACATTCACATCAAACCTGGTG
EY918414       <-- ..................................................
EW727098       <-- ..................................................
EW727396       <-- ..................................................
FD531979       <-- ..................................................
EY905098       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
FD561589       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCGAACCTGGTG
EW724204       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
FD939552       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
EY914655       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
EY922452       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
FD542309       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
EV566991       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
EV550024       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
EX765155       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
FD532293       --> GGCTGCTGCTATTCTCGGTGGTGTTGATCACATTCACATCAAACCTGGTG
EY897495       --> ...........gTCTCGGTGGTGTTGATCACATTCACATCAAATCTGGTG
EW722534       --> ..................................................
EW722445       --> ..................................................
FD536538       --> ..................................................
FD964643       --> ..................................................

               351    -    401
UN13300        --> CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- CTAAAGTTCTATACCTTGGTGCTACTTCTGGAACAACAGTCCCTCATGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910656       <-- CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768948       <-- CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572003       <-- CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. landra
FD528810       <-- CTAAAGTTCTATACCTTGGCGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. maritimus
EV545386       <-- CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918414       <-- ................................ACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. landra
EW727098       <-- .............................................gTGTC  Raphanus sativus cv Early Scarlet Globe
EW727396       <-- .............................................gTGTC  Raphanus sativus cv Early Scarlet Globe
FD531979       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY905098       --> CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561589       --> CTAAAGTTCTATACCTTGGCGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus sativus var. oleiformis
EW724204       --> CTAAAGTTCTATACCTTGGCGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus sativus cv Early Scarlet Globe
FD939552       --> CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus sativus var. oleiformis
EY914655       --> CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922452       --> CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. landra
FD542309       --> CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566991       --> CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. landra
EV550024       --> CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765155       --> CTAAAGTTCTATACCTTGGTGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532293       --> CTAAAGTTCTATACCTTGGCGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. maritimus
EY897495       --> CTAAAGTTCTATACCTTGGCGCTGCTTCTGGAACAACAGTCTCTCATGTC  Raphanus raphanistrum subsp. maritimus
EW722534       --> .............................................gTGTC  Raphanus sativus cv Early Scarlet Globe
EW722445       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD536538       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD964643       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN13300        --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EY910656       <-- TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCT-TTGAGTTCTCTCA
EX768948       <-- TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EV572003       <-- TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
FD528810       <-- TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EV545386       <-- TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EY918414       <-- TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EW727098       <-- TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EW727396       <-- TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
FD531979       <-- ..................................................
EY905098       --> TCTGACATAGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
FD561589       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EW724204       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
FD939552       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EY914655       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCT-TTGAGTTCTCTCA
EY922452       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
FD542309       --> TCTGACATAGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EV566991       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EV550024       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EX765155       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
FD532293       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EY897495       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EW722534       --> TCTGACATTGTTGGACCTGAGGGATGTGTTTACGCTGTTGAGTTCTCTCA
EW722445       --> ..............................TACGCTGTTGAGTTCTCTCA
FD536538       --> ..................................................
FD964643       --> ..................................................

               451    -    501
UN13300        --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAAAGAACTAATGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910656       <-- CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAAAGAACTAATGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768948       <-- CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAAAGAACTAATGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572003       <-- CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus raphanistrum subsp. landra
FD528810       <-- CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus raphanistrum subsp. maritimus
EV545386       <-- CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAAAGAACTAATGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918414       <-- CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus raphanistrum subsp. landra
EW727098       <-- CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus sativus cv Early Scarlet Globe
EW727396       <-- CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus sativus cv Early Scarlet Globe
FD531979       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY905098       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561589       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus sativus var. oleiformis
EW724204       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus sativus cv Early Scarlet Globe
FD939552       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAAAGAACTAATGTTA  Raphanus sativus var. oleiformis
EY914655       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAAAGAACTAATGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922452       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGA...............  Raphanus raphanistrum subsp. landra
FD542309       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566991       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus raphanistrum subsp. landra
EV550024       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAAAGAACTAATGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765155       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAAAGAACTAATGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532293       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus raphanistrum subsp. maritimus
EY897495       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus raphanistrum subsp. maritimus
EW722534       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus sativus cv Early Scarlet Globe
EW722445       --> CCGAAGTGGTAGAGATTTGGTGAACATGGCGAAGAAGAGAACTAATGTTA  Raphanus sativus cv Early Scarlet Globe
FD536538       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD964643       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN13300        --> TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910656       <-- TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768948       <-- TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572003       <-- TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. landra
FD528810       <-- TTCCAATCATCGAGGATGCTAGGCACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. maritimus
EV545386       <-- TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918414       <-- TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. landra
EW727098       <-- TTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus sativus cv Early Scarlet Globe
EW727396       <-- TTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus sativus cv Early Scarlet Globe
FD531979       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY905098       --> TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561589       --> TTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus sativus var. oleiformis
EW724204       --> TTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus sativus cv Early Scarlet Globe
FD939552       --> TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus sativus var. oleiformis
EY914655       --> TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922452       --> ..................................................  Raphanus raphanistrum subsp. landra
FD542309       --> TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566991       --> TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. landra
EV550024       --> TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765155       --> TTCCGATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532293       --> TTCCAATCATCGAGGATGCTAGGCACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. maritimus
EY897495       --> TTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus raphanistrum subsp. maritimus
EW722534       --> TTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus sativus cv Early Scarlet Globe
EW722445       --> TTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTT  Raphanus sativus cv Early Scarlet Globe
FD536538       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD964643       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN13300        --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- GGCATGGTTGATGTTGTCTTCTCTGATGTTGTTCAGCCTGATCAGGCTAG
EY910656       <-- GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EX768948       <-- GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EV572003       <-- GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
FD528810       <-- GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EV545386       <-- GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EY918414       <-- GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EW727098       <-- GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EW727396       <-- GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
FD531979       <-- ..................................gGCCTGATCAGGCTAG
EY905098       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
FD561589       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTTCTCAGCCTGATCAGGCTAG
EW724204       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
FD939552       --> GGCATGGTTGATGTTGTCTTCTCTGGTGTTGCTCAGCCTGATCAGGCTAG
EY914655       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EY922452       --> ..................................................
FD542309       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAG-CTA-
EV566991       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EV550024       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EX765155       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
FD532293       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EY897495       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EW722534       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
EW722445       --> GGCATGGTTGATGTTGTCTTCTCTGATGTTGCTCAGCCTGATCAGGCTAG
FD536538       --> ..................................gGCCTGATCAGGCTAG
FD964643       --> ..................................................

               601    -    651
UN13300        --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACGGGAGGTCACTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910656       <-- GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACGGGAGGTCACTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768948       <-- GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACGGGAGGTCACTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572003       <-- GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus raphanistrum subsp. landra
FD528810       <-- GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus raphanistrum subsp. maritimus
EV545386       <-- GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACGGGAGGTCACTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918414       <-- GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus raphanistrum subsp. landra
EW727098       <-- GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus sativus cv Early Scarlet Globe
EW727396       <-- GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus sativus cv Early Scarlet Globe
FD531979       <-- GATCGTGGCTTTGAACTCAATCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus raphanistrum subsp. maritimus
EY905098       --> GATCGTGGCTTTGAACTCGAGCTTCTTCCTCAAA................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561589       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus sativus var. oleiformis
EW724204       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus sativus cv Early Scarlet Globe
FD939552       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus sativus var. oleiformis
EY914655       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACGGGAGGTCACTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922452       --> ..................................................  Raphanus raphanistrum subsp. landra
FD542309       --> GATCGTGGCTTTGAACTCGAGCTTCTTCCT....................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566991       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus raphanistrum subsp. landra
EV550024       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACGGGAGGTCACTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765155       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACGGGAGGTCACTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532293       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus raphanistrum subsp. maritimus
EY897495       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus raphanistrum subsp. maritimus
EW722534       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus sativus cv Early Scarlet Globe
EW722445       --> GATCGTGGCTTTGAACTCAAGCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus sativus cv Early Scarlet Globe
FD536538       --> GATCGTGGCTTTGAACTCAATCTTCTTCCTCAAAACAGGAGGTCACTTTG  Raphanus raphanistrum subsp. maritimus
FD964643       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN13300        --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACGGTTCCAGCAGAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- TTATCTCCATCAAGGCAAACTGTATTGACTCGACGGTTCCAGCTGAGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910656       <-- TTATCTCCATCAAGGCAAACTGTATTGACTCGACGGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768948       <-- TTATCTCCATCAAGGCAAACTGTATTGACTCGACGGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572003       <-- TTATCTCCATCAAGGCGAACTGTATTGACTCGACGGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. landra
FD528810       <-- TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. maritimus
EV545386       <-- TTATCTCCATCAAGGCAAACTGTATTGACTCGACGGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918414       <-- TTATCTCCATCAAGGCGAACTGTATTGACTCGACGGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. landra
EW727098       <-- TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus sativus cv Early Scarlet Globe
EW727396       <-- TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus sativus cv Early Scarlet Globe
FD531979       <-- TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. maritimus
EY905098       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561589       --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus sativus var. oleiformis
EW724204       --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus sativus cv Early Scarlet Globe
FD939552       --> TTATCTCTATCAAGGCGAACTGTATTGACTCGACGGTTCCAGCAGAGGCA  Raphanus sativus var. oleiformis
EY914655       --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACGGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922452       --> ..................................................  Raphanus raphanistrum subsp. landra
FD542309       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566991       --> TTATCTCCATCAAGGCGAACTGTATTGACTCGACGGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. landra
EV550024       --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACGGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765155       --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACGGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532293       --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. maritimus
EY897495       --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. maritimus
EW722534       --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus sativus cv Early Scarlet Globe
EW722445       --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus sativus cv Early Scarlet Globe
FD536538       --> TTATCTCCATCAAGGCAAACTGTATTGACTCGACAGTTCCAGCAGAGGCA  Raphanus raphanistrum subsp. maritimus
FD964643       --> .........................................GCAGAGGCA  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN13300        --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- GCGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGT-CAAGCCAGC
EY910656       <-- GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EX768948       <-- GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EV572003       <-- GTGTTCCAGAGTGAAGTAAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
FD528810       <-- GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EV545386       <-- GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EY918414       <-- GTGTTCCAGAGTGAAGTAAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EW727098       <-- GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EW727396       <-- GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
FD531979       <-- GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EY905098       --> ..................................................
FD561589       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EW724204       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
FD939552       --> GTGTTCCAGAGTGAAGTTAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EY914655       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAG-AGCAGTTCAAGCCAGC
EY922452       --> ..................................................
FD542309       --> ..................................................
EV566991       --> GTGTTCCAGAGTGAAGTAAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EV550024       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EX765155       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
FD532293       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EY897495       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EW722534       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
EW722445       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
FD536538       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC
FD964643       --> GTGTTTCAGAGTGAAGTGAAGAAGCTGCAACAGGAGCAGTTCAAGCCAGC

               751    -    801
UN13300        --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGCCGTC
EY910656       <-- TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EX768948       <-- TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EV572003       <-- TGAGCAAGTGACGCTCGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
FD528810       <-- TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EV545386       <-- TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EY918414       <-- TGAGCAGGCGACGCTCGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EW727098       <-- TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EW727396       <-- TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
FD531979       <-- TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EY905098       --> ..................................................
FD561589       --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EW724204       --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
FD939552       --> GGAGCAAGTGACGCTTGAGCCATTT-GAGC....................
EY914655       --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTG.................
EY922452       --> ..................................................
FD542309       --> ..................................................
EV566991       --> TGAGCAAGTGACGCTCGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EV550024       --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EX765155       --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
FD532293       --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EY897495       --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EW722534       --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
EW722445       --> TGAGCAAGTGACGCTTGAGCCATTTTGAGCGTGACCA.............
FD536538       --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC
FD964643       --> TGAGCAAGTGACGCTTGAGCCATTT-GAGCGTGACCATGCCTGTGTCGTC

               801    -    851
UN13300        --> GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- GGTACATACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910656       <-- GGTACATACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768948       <-- GGTACATACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572003       <-- GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. landra
FD528810       <-- GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. maritimus
EV545386       <-- GGTACATACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918414       <-- GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. landra
EW727098       <-- GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus sativus cv Early Scarlet Globe
EW727396       <-- GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus sativus cv Early Scarlet Globe
FD531979       <-- GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. maritimus
EY905098       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561589       --> G-TACCTACCGTGCGCCTAAGAAGAACAAG-TTGCTGCTTAGAAGTTTCA  Raphanus sativus var. oleiformis
EW724204       --> G-TACCTACCGTGCGCCTAAGAAGAA........................  Raphanus sativus cv Early Scarlet Globe
FD939552       --> ..................................................  Raphanus sativus var. oleiformis
EY914655       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922452       --> ..................................................  Raphanus raphanistrum subsp. landra
FD542309       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566991       --> GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. landra
EV550024       --> GGTACATACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765155       --> GGTACATACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532293       --> GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. maritimus
EY897495       --> GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. maritimus
EW722534       --> GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus sativus cv Early Scarlet Globe
EW722445       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD536538       --> GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. maritimus
FD964643       --> GGTACCTACCGTGCGCCTAAGAAGAACAAGGTTGCTGCTTAGAAGTTTCA  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN13300        --> TGTGTTGGGATTTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- TGTGTTGGGAATTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910656       <-- TGTGTTGGGAATTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768948       <-- TGTGTTGGGAATTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572003       <-- TGTGTTGGGAATTGGTTCTTTGGATATTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. landra
FD528810       <-- TGTGTTGGGATTTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. maritimus
EV545386       <-- TGTGTTGGGAATTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918414       <-- TGTGTTGGTAATTGGTTCTTTGGATATTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. landra
EW727098       <-- TGTGTTGGGATTTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus sativus cv Early Scarlet Globe
EW727396       <-- TGTGTTGGGATTTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus sativus cv Early Scarlet Globe
FD531979       <-- TGTGTTGGGATTTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. maritimus
EY905098       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561589       --> TGTGTTGGGATTTGGTTCTTTGGATTTT-CGTTAGGGTTTat........  Raphanus sativus var. oleiformis
EW724204       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939552       --> ..................................................  Raphanus sativus var. oleiformis
EY914655       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922452       --> ..................................................  Raphanus raphanistrum subsp. landra
FD542309       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566991       --> TGTGTTGGGAATTGGTTCTTTGGATATTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. landra
EV550024       --> TGTGTTGGGAATTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765155       --> TGTGTTGGGAATTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532293       --> TGTGTTGGGATTTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. maritimus
EY897495       --> TGTGTTGGGATTTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. maritimus
EW722534       --> TGTGTTGGGATTTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus sativus cv Early Scarlet Globe
EW722445       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD536538       --> TGTGTTGGGATTTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. maritimus
FD964643       --> TGTGTTGGGATTTGGTTCTTTGGATTTTTCGTTAGGGTTTTATCTAGTAT  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN13300        --> TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EY910656       <-- TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EX768948       <-- TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EV572003       <-- TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
FD528810       <-- TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EV545386       <-- TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EY918414       <-- TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EW727098       <-- TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EW727396       <-- TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
FD531979       <-- TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EY905098       --> ..................................................
FD561589       --> ..................................................
EW724204       --> ..................................................
FD939552       --> ..................................................
EY914655       --> ..................................................
EY922452       --> ..................................................
FD542309       --> ..................................................
EV566991       --> TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EV550024       --> TGTGGTTTGTAATCGTTTTGAACCTGAATACGCTTTTTTCTATGTTTTTA
EX765155       --> TGTGGTTTGTAATCGTTTTGAACC..........................
FD532293       --> TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EY897495       --> TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EW722534       --> TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
EW722445       --> ..................................................
FD536538       --> TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA
FD964643       --> TGTGGTTTGTAATCGTTTTGAACCTGAATAGGCTTTTTTCTATGTTTTTA

               951    -   1001
UN13300        --> CTTTAAGACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- CTT---TACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY910656       <-- CTT---TACTTAAAACTCAGTATCTATATAACCTATATTTTTCTC.....  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768948       <-- CTT---TACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572003       <-- CTTTAAGACTTAAAACTCGGTATTTATATAACCTATATTTTTCgc.....  Raphanus raphanistrum subsp. landra
FD528810       <-- CTTTAAGACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus raphanistrum subsp. maritimus
EV545386       <-- CTT---TACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918414       <-- CTTTAAGACTTAAAACTCGGTATTTATATAACCTATATTTTTCTCATTTG  Raphanus raphanistrum subsp. landra
EW727098       <-- CTTTAAGACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus sativus cv Early Scarlet Globe
EW727396       <-- CTTTAAGACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus sativus cv Early Scarlet Globe
FD531979       <-- CTTTAAGACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus raphanistrum subsp. maritimus
EY905098       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561589       --> ..................................................  Raphanus sativus var. oleiformis
EW724204       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939552       --> ..................................................  Raphanus sativus var. oleiformis
EY914655       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922452       --> ..................................................  Raphanus raphanistrum subsp. landra
FD542309       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566991       --> CTTTAAGACTTAAAACTCGGTAT...........................  Raphanus raphanistrum subsp. landra
EV550024       --> CTTTA---CTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765155       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532293       --> CTTTAAGACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus raphanistrum subsp. maritimus
EY897495       --> CTTTAAGACTTAAAACTCAGTATCTATATAACCTATATTT..........  Raphanus raphanistrum subsp. maritimus
EW722534       --> CTTTAAGACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus sativus cv Early Scarlet Globe
EW722445       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD536538       --> CTTTAAGACTTAAAACTCAGTATCTATATAACCTATATTTTTCTCATTTG  Raphanus raphanistrum subsp. maritimus
FD964643       --> CTTCAAGACTTAAAACTCAGTATCTATATAACCTATATTTTTCTC.....  Raphanus raphanistrum subsp. maritimus

               1001   -   1051
UN13300        --> AGAAAGTTTATAGTATTTTGTACGACTCATTTGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX768281       <-- AGAAAGTTTATAGc.......................
EY910656       <-- .....................................
EX768948       <-- AGAAAGTTTATAGT.......................
EV572003       <-- .....................................
FD528810       <-- AGAAAGTTTATAGTATTTTGTACGACcc.........
EV545386       <-- AGAAAGTTTATAGTAac....................
EY918414       <-- AGAAAGTTTATAGTATTTTGTACGACTCATTTGTTTG
EW727098       <-- AGAAAGTTTATAG........................
EW727396       <-- AGAAAGTTT............................
FD531979       <-- AGAAAGTTTATAGTATTTTGT................
EY905098       --> .....................................
FD561589       --> .....................................
EW724204       --> .....................................
FD939552       --> .....................................
EY914655       --> .....................................
EY922452       --> .....................................
FD542309       --> .....................................
EV566991       --> .....................................
EV550024       --> AGAAAGTTTATAGTAac....................
EX765155       --> .....................................
FD532293       --> AGAAAGTTTATAGTATTTTGTACGACcc.........
EY897495       --> .....................................
EW722534       --> AGAAAGTTTATAG........................
EW722445       --> .....................................
FD536538       --> AGAAAGTTTATAGTATTTTGT................
FD964643       --> .....................................