1      -     51
UN13303        --> GGATCAATCTCTCCCTTGTTGTGAATTTCGGAG-CGAAGAAAAAAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530145       <-- GGATCAATCTCTCCCTTGTTGTGAATTTCGGAG-CGAAGAAAAAAAAAGA  Raphanus raphanistrum subsp. maritimus
FD553234       <-- ...ggAATCTCTCCCTTGTTGTGAATTTCGGAGGCGAAGAAAAAAAA-GA  Raphanus raphanistrum subsp. landra
FY443843       <-- ......................GAATTTCGGAG-CGAAGAAAAAAAA-GA  Raphanus sativus cv GSK3-1
EV544309       <-- ................................................gg  Raphanus raphanistrum subsp. raphanistrum (NY)
FD534134       --> GGATCAATCTCTCCCTTGTTGTGAATTTCGGAG-CGAAGAAAAAAAAAGA  Raphanus raphanistrum subsp. maritimus
FD963019       --> .GATCAATCTCTCCCTTGTTGTGAATTTCGGAG-CGAAGAAAAAAAAAGA  Raphanus raphanistrum subsp. maritimus
FD557039       --> ...ggAATCTCTCCCTTGTTGTGAATTTCGGAGGCGAAGAAAAAAAA-GA  Raphanus raphanistrum subsp. landra
EV548678       --> ................................................gg  Raphanus raphanistrum subsp. raphanistrum (NY)

               51     -    101
UN13303        --> GAAAAGAAGATCGGAGATGGCATCGACGGCGGCGGTTCCGTTCTGGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530145       <-- GAAAAGAAGATCGGAGATGGCATCGACGGCGGCGGTTCCGTTCTGGAGAG
FD553234       <-- GAAAAGAAGATCGGAGATGGCATCGACGGCGGCGGTTCCGTTCTGGAGAG
FY443843       <-- GAAAAGAAGATCGGAGATGGCATCGACGGCGGCGGTTCCGTTCTGGAGAG
EV544309       <-- GAAAAGAAGATCGGAGATGGCATCGACGGCGGCGGTTCCGTTTTGGAGAG
FD534134       --> GAAAAGAAGATCGGAGATGGCATCGACGGCGGCGGTTCCGTTCTGGAGAG
FD963019       --> GAAAAGAAGATCGGAGATGGCATCGACGGCGGCGGTTCCGTTCTGGAGAG
FD557039       --> GAAAAGAAGATCGGAGATGGCATCGACGGCGGCGGTTCCGTTCTGGAGAG
EV548678       --> GAAAAGAAGATCGGAGATGGCATCGACGGCGGCGGTTCCGTTCTGGAGAG

               101    -    151
UN13303        --> CGGCGGGGATGACTTACATTACCTACTCAAACATTTGTGCGAATCTCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530145       <-- CGGCGGGGATGACTTACATTACCTACTCAAACATTTGTGCGAATCTCGTG
FD553234       <-- CGGCGGTGATGACTTACATTACCTACTCAAACATTTGTGCGAATCTCGTG
FY443843       <-- CGGCTGGGATGACTTACATCACCTACTCAAACATTTGTGCGAATCTCGTG
EV544309       <-- CGGCGGGGATGACTTACATTACCTACTCAAACATTTGTGCGAATCTCGTG
FD534134       --> CGGCGGGGATGACTTACATTACCTACTCAAACATTTGTGCGAATCTCGTG
FD963019       --> CGGCGGGGATGACTTACATTACCTACTCAAACATTTGTGCGAATCTCGTG
FD557039       --> CGGCGGTGATGACTTACATTACCTACTCAAACATTTGTGCGAATCTCGTG
EV548678       --> CGGCGGGGATGACTTACATTACCTACTCAAACATTTGTGCGAATCTCGTG

               151    -    201
UN13303        --> AGGAACTGTCTCAAGGAGCCTTTCAAAGCTGAAGCCCTTAATCGCGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530145       <-- AGGAACTTTCTCAAGGAGCCTTTCAAAGCTGAAGCCCTTAATCGCGAGAA
FD553234       <-- AGGAACTGTCTCAAGGAGCCTTTCAAAGCTGAAGCCCTTAATCGCGAGAA
FY443843       <-- AGGAACTGTCTCAAGGAGCCTTTCAAAGCTGAAGCCCTTAATCGCGAGAA
EV544309       <-- AGGAACTGTCTCAAGGAGCCTTTCAAAGCTGAAGCCCTTAATCGCGAGAA
FD534134       --> AGGAACTTTCTCAAGGAGCCTTTCAAAGCTGAAGCCCTTAATCGCGAGAA
FD963019       --> AGGAACTGTCTCAAGGAGCCTTTCCAAGCTGAAGCCCTTAATCGCGAGAA
FD557039       --> AGGAACTGTCTCAAGGAGCCTTTCAAAGCTGAAGCCCTTAATCGCGAGAA
EV548678       --> AGGAACTGTCTCAAGGAGCCTTTCAAAGCTGAAGCCCTTAATCGCGAGAA

               201    -    251
UN13303        --> GGTTCATTTCTCGCTCTCCAAATGGGCTGGCGGAAAGCCTGAGAAACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530145       <-- GGTTCATTTCTCGCTCTCCAAATGGGCTGGCGGAAAGCCTGAGAAACCAA
FD553234       <-- GGTTCATTTCTCGCTCTCCAAATGGGCTGGCGGAAAGCCTGAGAAACCAA
FY443843       <-- GGTTCATTTCTCGCTCTCCAAATGGGCTGGCGGAAAGCCTGAGAAACCAA
EV544309       <-- GGTTCATTTCTCGCTCTCCAAATGGGCTTGCGGAAAGCCTGAGAAACCAA
FD534134       --> GGTTCATTTCTCGCTCTCCAAATGGGCTGGCGGAAAGCCTGAGAAACCAA
FD963019       --> GGTTCATTTCTCGCTCTCCAAATGGGCTGGCGGGAAGCCTGAGAAACCAA
FD557039       --> GGTTCATTTCTCGCTCTCCAAATGGGCTGGCGGAAAGCCTGAGAAACCAA
EV548678       --> GGTTCATTTCTCGCTCTCCAAATGGGCTTGCGGAAAGCCTGAGAAACCAA

               251    -    301
UN13303        --> TTCTGCGTTCTGACACACCTGGAGTTTGAGATTTTTTTAGCGTTTCGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530145       <-- TTTTGCGTTTTGACACACCTGGAGTTTGAGATTTTTT-AACGTTTCGATA  Raphanus raphanistrum subsp. maritimus
FD553234       <-- TTCTGCGTTCTGACACACCTGGAGTTTGAGATTTTTTTAGCGTTTCGATA  Raphanus raphanistrum subsp. landra
FY443843       <-- TTCTGCGTTTTGACACACCTGGAGTTTGAGATTTTTTTAGCGTTTCGATA  Raphanus sativus cv GSK3-1
EV544309       <-- TTTTGCGTCCTGACACACCTGGAGTTTGAGATTTTTTTAGTGTTTCGATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD534134       --> TTCTGCGTTCTGACACACCTGGAGTTTGAGATTTTTT-AACGTTTCGATA  Raphanus raphanistrum subsp. maritimus
FD963019       --> TTCTGCGTTCTGACACACCTGGAGTTTGAGATTTTTT-AACGTTTCAATA  Raphanus raphanistrum subsp. maritimus
FD557039       --> TTCTGCGTTCTGACACACCTGGAGTTTGAGATTTTTTTAGCGTTTCGATA  Raphanus raphanistrum subsp. landra
EV548678       --> TTCTGCGTCCTGACACACCTGGAGTTTGAGATTTTTTTAGTGTTTCGATA  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN13303        --> TCAAGTTTGAGGTTAATAATGGTGAGGAATGCAAGATATTATGTACTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530145       <-- TCAAGTTTGAGGTTAATAATGGTGAGGAATGCAAGATATTATGTACTTTG
FD553234       <-- TCAAGTTTGAGGTTAATAATGGTGAGGAATGCAAGATATTATGTACTCTG
FY443843       <-- TCAAGTTTGAGGTTAATAATGGTGAGGAATGCAAGATATTATGTACTCTG
EV544309       <-- TCAAGTTTGAGGTTAATAATGGTGAGGAATGCAAGATATTATGTACTTTG
FD534134       --> TCAAGTTTGAGGTTAATAATGGTGAGGAATGCAAGATATTATGTACTCTG
FD963019       --> TCAAGTTTGAGGTTAATAATGGTGAGGAATGCAATAAATTATGTACTCTG
FD557039       --> TCAAGTTTGAGGTTAATAATGGTGAGGAATGCAAGATATTATGTACTCTG
EV548678       --> TCAAGTTTGAGGTTAATAATGGTGAGGAATGCAAGATATTATGTACTCTG

               351    -    401
UN13303        --> CAACATTTTCCTTCTTTTGACTTTAAGATTGTTAACAATGGAGTTCGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530145       <-- CAACATTTTCCTTCTTTTGACTTTAAGATTGTTAACAATGGAGTTCGAGT
FD553234       <-- CAACATTTTCCTTCTTTTGACTTTAAGATTGTTAACAATGGAGTTCGAGT
FY443843       <-- CAACATTTTCCTTCTTTTGACTTTAAGATTGTTAACAATGGAGTTCGAGT
EV544309       <-- CAACATTTTCCTTCTTTTGACTTTAAGATTGTTAACAATGGAGTTCGAGT
FD534134       --> CAACATTTTCCTTCTTTTGACTTTAAGATTGTTAACAATGGAGTTCGAGT
FD963019       --> CAACATTTTCCTTCTTTTGACATTAAGATTGTTAACAATGGAGTTTGAGT
FD557039       --> CAACATTTTCCTTCTTTTGACTTTAAGATTGTTAACAATGGAGTTCGAGT
EV548678       --> CAACATTTTCCTTCTTTTGACTTTAAGATTGTTAACAATGGAGTTCGAGT

               401    -    451
UN13303        --> GAGAGAGAGTGACCTCATTCCTATCTTGAAACTTTTTTTTTTTGAAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530145       <-- GAGAGAGAGTGACCTCATTCCTATCTTGAAACTTTTTTTTTTTGAAAATG
FD553234       <-- GAGAGAGAGTGACCTCATTCCTATCTTGAAACTTTTTTTTTTTGAAAATG
FY443843       <-- GAGAGAcctcattcctatctg.............................
EV544309       <-- GAGAGAGAGTGACCTCATTCCTATCTTGAAACTTTTTTTTTTTGAAAATG
FD534134       --> GAGAGAGAGTGACCTCATTCCTATCTTGAAACTTTTTTTTTTTGAAAATG
FD963019       --> GAGAGAGAGCGCCCTCATTCC.............................
FD557039       --> GAGAGAGAGTGACCTCATTCCTATCTTGAAACTTTTTTTTTTTGAAAATG
EV548678       --> GAGAGAGAGTGACCTCATTCCTATCTTGAAACTTTTTTTTTTTGAAAATG

               451    -    501
UN13303        --> GCTTTCAAATTAAAGAGCAAAAATAAAAAAAGTTTACTATCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530145       <-- GCTTTCAAATTAAAGAGCAAAAATAAAAAAAGTTTACTATCTTG
FD553234       <-- GCTTTCAAATTAAAGAGC..........................
FY443843       <-- ............................................
EV544309       <-- GCTTCCAAATTAAAGAGCAAAAATAAAAAAAGTTTACTATCTTG
FD534134       --> GCTTTCAAATTAAAGAGCAAAAATAAAAAAAGTTTACTATCTTG
FD963019       --> ............................................
FD557039       --> GCTTTCAAATTAAAGAGC..........................
EV548678       --> GCTTCCAAATTAAAGAGCAAAAATAAAAAAAGTTTACTATCTTG