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Alignment for radish unigene UN13306

               1      -     51
UN13306        --> GGAGCTTCGCAGCAATAACTCCAGCTAAAGAAAAAAAAACGGAACCCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> GGAGCTTCGCAGCAATAACTCCAGCTAAAGAAAAAAAAACGGAACCCTAG
EW722155       --> .ggactactagcttcacagcaacttagctGAAAAAAAAACGGAACCCTAG
EW722156       --> .ggactactagcttcacagcaacttagctGAAAAAAAAACGGAACCCTAG
EY909043       --> .......ggagcttcgcagcaactcagctGAAAAAAAAACGGAACCCTAG
EV535308       --> ............gggcagcaactcagctgaAAAAAAAAACGGAACCCTAG
EX755855       --> ......ggagcttcgcagcaactcagctgaAAAAAAAAACGGAACCCTAG
EV536038       --> .......gggagcttcgcagcaactcagctgAAAAAAAACGGAACCCTAG
FD964480       --> ..............gggcagcaactcagctgAAAAAAAACGGAACCCTAG
FD965953       --> ..................................................

               51     -    101
UN13306        --> CGAAGCGAATCTTTCTGAGCTTCCCGTCTCCTCCTCCTCCTTGAAG--CT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> CGAAGCGAATCTTTCTGAGCTTCCCGTCTCCTCCTCCTCCTTGAAGGTCG
EW722155       --> CGAAGCGAATCTTTCTGAGCTTCCTGTCTCCTCCTCCTCCTTGAAG--CT
EW722156       --> CGAAGCGAATCTTTCTGAGCTTCCTGTCTCCTCCTCCTCCTTGAAG--CT
EY909043       --> CGAAGCGAATCTTTCTGAGCTTCCCGTCTCCTCCTCCTCCTTGAAG--CT
EV535308       --> CGAAGCGAATCTTTCTGAGCTTCCCGTCTCCTCCTCCTCCTTGAAG--CT
EX755855       --> CGAAGCGAATCTTTCTGAGCTTCCCGTCTCCTCCTCCTCCTTGAAG--CT
EV536038       --> CGAAGCGAATCTTTCTGAGCTTCCCGTCTCCTCCTCCTCCTTGAAG--CT
FD964480       --> CGAAGCGAATCTTTCTGAGCTTCCCGTCTCCTCCTCCTCCTTGAAGGTCG
FD965953       --> ......ggaaccctagcgaatctttctaagCTCCTCCTCCTTGAAGGTCG

               101    -    151
UN13306        --> ACACTGATAGAGA--AAGGATGCCTCCGAAAGGGAAAGCAAAGGATGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> ACACTAATAGAGA--AAGGATGCCTCCGAAAGGGAAAGCAAAGGATGCAG
EW722155       --> ACACTGATAGAGA--AAGGATGCCTCCGAAAGGGAAAGCAAAGGATGCAG
EW722156       --> ACACTGATAGAGA--AAGGATGCCTCCGAAAGGGAAAGCAAAGGATGCAG
EY909043       --> ACACTGATAGAGA--AAGGATGCCTCCGAAAGGGAAAGCAAAGGATGCAG
EV535308       --> ACACTGATAGAGA--AAGGATGCCTCCGAAAGGGAAAGCAAAGGATGCAG
EX755855       --> ACACTGATAGAGA--AAGGATGCCTCCGAAAGGGAAAGCAAAGGATGCAG
EV536038       --> ACACTGATAGAGA--AAGGATGCCTCCGAAAGGGAAAGCAAAGGATGCAG
FD964480       --> ACACTAATAGAGAGAAAGGGTGCCTCCGAAAGGGAAAGCAAAGGATGCAG
FD965953       --> ACACTAATAGAGAGAAAGGATGCCTCCGAAAGGGAAAGCAAAGGATGCAG

               151    -    201
UN13306        --> GTCCCGTAGAGAGGCCAATCCTTGGCCGTTTCTCTTCTCACCTCAAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> GTCCCGTAGAGAGGCCAATCCTTGGCCGTTTCTCTTCTCACCTCAAGATC
EW722155       --> GTCCCGTAGAGAGGCCAATCCTTGGCCGTTTCTCTTCTCACCTCAAGATC
EW722156       --> GTCCCGTAGAGAGGCCAATCCTTGGCCGTTTCTCTTCTCACCTCAAGATC
EY909043       --> GTCCCGTAGAGAGGCCAATCCTTGGCCGTTTCTCTTCTCACCTCAAGATC
EV535308       --> GTCCCGTAGAGAGGCCAATCCTTGGCCGTTTCTCTTCTCACCTCAAGATC
EX755855       --> GTCCCGTAGAGAGGCCAATCCTTGGCCGTTTCTCTTCTCACCTCAAGATC
EV536038       --> GTCCCGTAGAGAGGCCAATCCTTGGCCGTTTCTCTTCTCACCTCAAGATC
FD964480       --> GTCCCGTAGAGAGGCCAATCCTTGGCCGTTTCTCTTCTCACCTCAAGATC
FD965953       --> GTCCCGTAGGGAGGCCAATCCTTGGCCGTTTCTCTTCTCACCTCAAGATC

               201    -    251
UN13306        --> GGAATCGTAGGGTTACCAAACGTGGGAAAGTCAACACTTTTCAACACCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> GGAATCGTAGGGTTACCAAACGTGGGAAAGTCAACACTTTTCAACACCCT
EW722155       --> GGAATCGTAGGGTTACCAAACGTGGGAAAGTCAACACTTTTCAACAACCT
EW722156       --> GGAATCGTAGGGTTACCAAACGTGGGAAAGTCAACACTTTTCAACAACCT
EY909043       --> GGAATCGTAGG-TTACCAAACGTGGGAAAGTCAACACTTTTCAACACCCT
EV535308       --> GGAATCGTAGGGTTACCAAACGTGGGAAAGTCAACACTTTTCAACACCCT
EX755855       --> GGAATCGTAGGGTTACCTAACGTGGGAAAGTCAACACTTTTCAACACCCT
EV536038       --> GGAATCGTAGGGTTACCAAACGTGGGAAAGTCAACACTTTTCAACACCCT
FD964480       --> GGAATCGTAGGGTTACCAAACGTGGGAAAGTCAACACTTTTCAACACCCT
FD965953       --> GGAATCGTAGGGTTACCAAACGTGGGAAAGTCAACACTTTTCAACACCCT

               251    -    301
UN13306        --> AACGAAGCTTTCAATCCCAGCTGAGAACTTCCCCTTTTGTACCATTGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> AACGAAGCTTTCAATCCCAGCTGAGAACTTCCCCTTTTGTACCATTGAGC
EW722155       --> AACGAAGCTTTCAATCCCAGCTGAGAACTTCCCCTTTTGTACCATTGAGC
EW722156       --> AACGAAGCTTTCAATCCCAGCTGAGAACTTCCCCTTTTGTACCATTGAGC
EY909043       --> AACGAAGCTTTCAATCCCAGCTGAGAACTTCCCCTTTTGTACCATTGAGC
EV535308       --> AACGAAGCTTTCAATCCCAGCTGAGAACTTCCCCTTTTGTACCATTGAGC
EX755855       --> AACGAAGCTTTCAATCCCAGCTGAGAACTTCCCCTTTTGTACCATTGAGC
EV536038       --> AACGAAGCTTTCAATCCCAGCTGAGAACTTCCCCTTTTGTACCATTGAGC
FD964480       --> AACGAAGCTTTCAATCCCAGCTGAGAACTTCCCCTTTTGTACCATTGAGC
FD965953       --> AACGAAGCTTTCAATCCCAGCTGAGAACTTCCCCTTTTGTACCATTGAGC

               301    -    351
UN13306        --> CCAACGAGGCACGTGTCAATATCCCCGATGACAGGTTTGATTGGCTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> CCAACGAGGCACGTGTCAACATCCCCGATGACAGGTTTGATTGGCTTTGT
EW722155       --> CCAACGAGGCACGTGTCAATATCCCCGATGACAGGTTTGATTGGCTTTGT
EW722156       --> CCAACGAGGCACGTGTCAATATCCCCGATGACAGGTTTGATTGGCTTTGT
EY909043       --> CCAACGAGGCACGTGTCAATATCCCCGATGACAGGTTTGATTGGCTTTGT
EV535308       --> CCAACGAGGCACGTGTCAATATCCCCGATGACAGGTTTGATTGGCTTTGT
EX755855       --> CCAACGAGGCACGTGTCAATATCCCCGATGACAGGTTTGATTGGCTTTGT
EV536038       --> CCAACGAGGCACGTGTCAATATCCCCGATGACAGGTTTGATTGGCTTTGT
FD964480       --> CCAACGAGGCACGTGTCAACATCCCCGATGACAGGTTTGATTGGCTTTGT
FD965953       --> CCAACGAGGCACGTGTCAACATCCCCGATGACAGGTTTGATTGGCTTTGT

               351    -    401
UN13306        --> CAATTGTACAAGCCCAAGAGTGAGATTCCTGCTTTCTTGGAAATTCATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> CATTTGTACAAGCCCAAGAGTGAGATTCCTGCTTTCTTGGAAATTCATGA
EW722155       --> CAATTGTACAAGCCCAAGAGTGAGATTCCTGCTTTCTTGGAAATTCATGA
EW722156       --> CAATTGTACAAGCCCAAGAGTGAGATTCCTGCTTTCTTGGAAATTCATGA
EY909043       --> CAATTGTACAAGCCCAAGAGTGAGATTCCTGCTTTCTTGGAAATTCATGA
EV535308       --> CAATTGTACAAGCCCAAGAGTGAGATTCCTGCTTTCTTGGAAATTCATGA
EX755855       --> CAATTGTACAAGCCCAAGAGTGAGATTCCTGCTTTCTTGGAAATTCATGA
EV536038       --> CAATTGTACAAGCCCAAGAGTGAGATTCCTGCTTTCTTGGAAATTCATGA
FD964480       --> CAATTGTACAAGCCCAAGAGTGAGATTCCTGCTTTCTTGGAAATTCATGA
FD965953       --> CATTTGTACAAGCCCAAGAGTGAGATTCCTGCTTTCTTGGAAATTCATGA

               401    -    451
UN13306        --> CATTGCTGGCCTTGTTCGAGGCGCTCATGAAGGACAGGGTCTTGGAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> CATTGCTGGCCTTGTTCGAGGCGCTCATGAAGGACAGGGTCTTGGAAACA
EW722155       --> CATTGCTGGCCTTGTTCGAGGCGCTCATGAAGGACAGGGTCTTGGAAACA
EW722156       --> CATTGCTGGCCTTGTTCGAGGCGCTCATGAAGGACAGGGTCTTGGAAACA
EY909043       --> CATTGCTGGCCTTGTTCGAGGCGCTCATGAAGGACAGGGTCTTGGAAACA
EV535308       --> CATTGCTGGCCTTGTTCGAGGCGCTCATGAAGGACAGGGTCTTGGAAACA
EX755855       --> CATTGCTGGCCTTGTTCGAGGCGCTCATGAAGGACAGGGTCTTGGAAACA
EV536038       --> CATTGCTGGCCTTGTTCGAGGCGCTCATGAAGGACAGGGTCTTGGAAACA
FD964480       --> CATTGCTGGCCTTGTTCGAGGCGCTCACGAAGGACAGGGTCTTGGAAACA
FD965953       --> CATTGCTGGCCTTGTTCGAGGCGCTCACGAAGGACAGGGTCTTGGAAACA

               451    -    501
UN13306        --> ACTTCTTGTCTCATATTCGTGCTGTTGATGGCATCTTCCATGTTCTACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> ACTTCTTGTCTCATATTCGTGCTGTTGATGGAATCTTCCATGTCTTACGT
EW722155       --> ACTTCTTGTCTCATATCCGTGCTGTTGATGGCATCTTCCATGTTCTACGT
EW722156       --> ACTTCTTGTCTCATATCCGTGCTGTTGATGGCATCTTCCATGTTCTACGT
EY909043       --> ACTTCTTGTCTCATATTCGTGCTGTTGATGGCATCTTCCATGTTCTACGT
EV535308       --> ACTTCTTGTCTCATATTCGTGCTGTTGATGGCATCTTCCATGTTCTACGT
EX755855       --> ACTTCTTGTCTCATATTCGTGCTGTTGATGGTATCTTCCATGTTCTACGT
EV536038       --> ACTTCTTGTCTCATATTCGTGCTGTTGATGGCATCTTCCATGTTCTACGT
FD964480       --> ACTTCTTGTCTCATATTCGTGCTGTTGATGGCATCTTCCATGTTTTACGT
FD965953       --> ACTTCTTGTCTCATATTCGTGCTGTTGATGGAATCTTCCATGTCTTACGT

               501    -    551
UN13306        --> GCCTTTGAAGATCCTGATATTATTCATGTTGATGATATTGTGGATCCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................
EW720093       <-- ..................................................
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> GCCTTTGAAGATCCTGATATTATTCATGTTGATGATATTGTGGATCCTGT
EW722155       --> GCCTTTGAAGATCCTGATATTATTCATGTTGATGATATTGTGGATCCTGT
EW722156       --> GCCTTTGAAGATCCTGATATTATTCATGTTGATGATATTGTGGATCCTGT
EY909043       --> GCCTTTGAAGATCCTGATATTATTCATGTTGATGATATTGTGGATCCTGT
EV535308       --> GCCTTTGAAGATCCTGATATTATTCATGTTGATGATATTGTGGATCCTGT
EX755855       --> GCCTTTGAAGATCCTGATATTATTCATGTTGATGATATTGTGGATCCTGT
EV536038       --> GCCTTTGAAGATCCTGATATTATTCATGTTGATGATATTGTGGATCCTGT
FD964480       --> GCCTTTGAAGATCCTGATATTATTCATGTTGATGATATTGTGGATCCTGT
FD965953       --> GCCTTTGAAGATCCTGATATTATTCATGTTGATGATATTGTGGATCCTGT

               551    -    601
UN13306        --> TAGAGATTTGGAGACCATTACTGAAGAATTGCGTCTCAAGGATATTGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW720093       <-- ..................................................  Raphanus sativus var. oleiformis
FD564984       <-- ..................................................  Raphanus sativus var. oleiformis
EW726968       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD961550       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV543689       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY934148       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX900238       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569729       --> TAGAGATTTGGAGACCATTACTGAAGAATTGCGTCTAAAGGATATTGAAT  Raphanus raphanistrum subsp. landra
EW722155       --> TAGAGATTTGGAGACCATTACTGAAGAATTGCGTCTAAAGGATATTGAAT  Raphanus sativus cv Early Scarlet Globe
EW722156       --> TAGAGATTTGGAGACCATTACTGAAGAATTGCGTCTAAAGGATATTGAAT  Raphanus sativus cv Early Scarlet Globe
EY909043       --> TAGAGATTTGGAGACCATTACTGAAGAATTGCGTCTCAAGGATATTGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535308       --> TAGAGATTTGGAGACCATTACTGAAGAATTGCGTCTCAAGGATATTGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755855       --> TAGAGATTTGGAGACCATTACTGAAGAATTGCGTCTCAAGGATATTGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536038       --> TAGAGATTTGGAGACCATTACTGAAGAATTGCGTCTCAAGGATATTGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964480       --> T.................................................  Raphanus raphanistrum subsp. maritimus
FD965953       --> TAGAGATTTGGAGACCATTACTGAAGAATTGCGTCTAAAGGATATTGAAT  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN13306        --> TCATTAAAAAGAAGATTGAAGATGTCGAGAAGAGCATGAAGAGGAGCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ...............................................AAT  Raphanus sativus cv Early Scarlet Globe
EW720093       <-- ..................................................  Raphanus sativus var. oleiformis
FD564984       <-- ..................................................  Raphanus sativus var. oleiformis
EW726968       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD961550       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV543689       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY934148       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX900238       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569729       --> TCATTAAAAAGAAGATCGAAGATGTCGAGAAGAGCATGAAGAGGAGCAAT  Raphanus raphanistrum subsp. landra
EW722155       --> TCATTAAAAAGAAGATCGAAGATGTCGAGAAGAGCATTAAGAGGAGCAAT  Raphanus sativus cv Early Scarlet Globe
EW722156       --> TCATTAAAAAGAAGATCGAAGATGTCGAGAAGAGCATTAAGAGGAGCAAT  Raphanus sativus cv Early Scarlet Globe
EY909043       --> TCATTAAAAAGAAGATTGAAGATGTCGAGAAAGGCATGAAGAGGAGCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535308       --> TCATTAAAAAGAAGATTGAAGATGTCGAGAAGAGCATGAAGAGGAGCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755855       --> TCATTAAAAAGAAGATTGAAGATGTCGAGAAGAGCATGAAGAGGAGCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536038       --> TCATTAAAAAGAAGATTGAAGATGTCGAGAAGAGCATGAAGAGGAGCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964480       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965953       --> TCATTAAAAAGAAGATCGAAGATGTCGAGAAGAGCATGAAGAGGAGCAAT  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN13306        --> GACAAGGCGCTTAAAGTCGAACTTGAGCTCTTGCTAAAGGTAAAAGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- GACAAGGCGCTTAAAGTCGAGCTTGACCTCTTGCTAAAGGTAAAAGCTTG  Raphanus sativus cv Early Scarlet Globe
EW720093       <-- ...............................TGCTAAAGGTAAAAGCTTG  Raphanus sativus var. oleiformis
FD564984       <-- ..................................................  Raphanus sativus var. oleiformis
EW726968       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD961550       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV543689       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY934148       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX900238       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569729       --> GACAAGGCGCTTAAAGTCGAACTTGAGCTCTTGCTAAATGTAA.......  Raphanus raphanistrum subsp. landra
EW722155       --> GACAAGGCGCTTAAAGTCGAGCTTGACCTCTTGCTAAAGGTAAAAGCTTG  Raphanus sativus cv Early Scarlet Globe
EW722156       --> GACAAGGCGCTTAAAGTCGAGCTTGACCTCTTGCTAAAGGTAA.......  Raphanus sativus cv Early Scarlet Globe
EY909043       --> GACAAGACGCTTAAAGTCGAACTTGAGCTCTTGCTTAAGta.........  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535308       --> GACAAGGCGCTTAAAGTCGAACTTGAGCTCTTGCTTAAAGTAA.......  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755855       --> GACAAGGCGCTTAAAGTCGAACTTGAGCTCTTGCT...............  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536038       --> GACAAGGCGCTTAAAGTCGAACTTGAGCTCTTGCTTAAAGTAAAAGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964480       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965953       --> GACAAGGCGCTTAAAGTCGAACTTGAGCTCTTGCT...............  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN13306        --> GCTGGAAGAAGGAAAGGATGTCCGTTTTGGGGACTGGAAAGCAGCTGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- GCTGGAAGAAGGAAAGGATGTCCGTTTTGGGGACTGGAAAGCAGCTGATA
EW720093       <-- GCTGGAAGAAGGAAAGGATGTCCGTTTTGGGGACTGGAAAGCAGCTGATA
FD564984       <-- ..................................................
EW726968       <-- ..................................................
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> ..................................................
EW722155       --> GCTGGAAGAAG-AAAGGATGTCCGTTTTGGGGACTGGAAAGCAGCTGATA
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> GCTGGAAGAAG-AAAGTATGTCCGTTTTGGGGACTGGAA-GCAGCTGATA
FD964480       --> ..................................................
FD965953       --> ..................................................

               751    -    801
UN13306        --> TCGAGATTCTGAACACTTTCCAATTGCTTTCCGCTAAGCCCGTTGTTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- TCGAGATTCTGAACACTTTCCAATTGCTTTCCGCTAAGCCCGTTGTTTAC
EW720093       <-- TCGAGATTCTGAACACTTTCCAATTGCTTTCCGCTAAGCCCGTTGTTTAC
FD564984       <-- ..........GAACACTTTCCAATTGCTTTCCGCTAAGCCCGTTGTTTAC
EW726968       <-- ...........AACACTTTCCAATTGCTTTCCGCTAAGCCCGTTGTTTAC
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> ..................................................
EW722155       --> TCGAGATTCTGAACACTTTCCAATTGCTTTCCGCTAAGCCCGTTGTTTAC
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> TCGAGATTTTGAACACTTTCCA-TTGCTTTCCGCTAAGCCCG........
FD964480       --> ..................................................
FD965953       --> ..................................................

               801    -    851
UN13306        --> TTGATTAACATGAATGAGAGAGACTACCAGAGGAAGAAAAACAAGTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- TTGATTAACATGAATGAGAGAGACTACCAGAGGAAGAAAAACAAGTTCCT
EW720093       <-- TTGATTAACATGAATGAGAGAGACTACCAGAGGAAGAAAAACAAGTTCCT
FD564984       <-- TTGATTAACATGAATGAGAGAGACTACCAGAGGAAGAAAAACAAGTTCCT
EW726968       <-- TTGATTAACATGAATGAGAGAGACTACCAGAGGAAGAAAAACAAGTTCCT
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> ..................................................
EW722155       --> TTGATTAACATGAATGAGAGAGACTACCAGAGGA................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               851    -    901
UN13306        --> GCCGAAGATTCATGCTTGGGTTCAAGAACACGGTGGTGATACTATGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- GCCGAAGATTCATGCTTGGGTTCAAGAACACGGTGGTGATACTATGATTC
EW720093       <-- GCCGAAGATTCATGCTTGGGTTCAAGAACACGGTGGTGATACTATGATTC
FD564984       <-- GCCGAAGATTCATGCTTGGGTTCAAGAACACGGTGGTGATACTATGATTC
EW726968       <-- GCCGAAGATTCATGCTTGGGTTCAAGAACACGGTGGTGATACTATGATTC
FD961550       <-- ..................................................
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               901    -    951
UN13306        --> CTTTCAGTGGTGTTTTCGAAAGGAGTCTCGCTGATATGCTCCCAGACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- CTTTCAGTGGTGTTTTCGAAAGGAGTCTCGCTGATATGCTCCCAGACGAA
EW720093       <-- CTTTCAGTGGTGTTTTCGAAAGGAGTCTCGCTGATATGCTCCCAGACGAA
FD564984       <-- CTTTCAGTGGTGTTTTCGAAAGGAGTCTCGCTGATATGCTCCCAGACGAA
EW726968       <-- CTTTCAGTGGTGTTTTCGAAAGGAGTCTCGCTGATATGCTCCCAGACGAA
FD961550       <-- ................................................AA
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               951    -   1001
UN13306        --> GCAGCAAAGTATTGTGAGGAGAACAAACTGCAAAGTGCTCTTCCGAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- GCAGCAAAGTATTGTGAGGAGAACAAACTGCAAAGTGCTCTTCCGAGGAT
EW720093       <-- GCAGCAAAGTATTGTGAGGAGAACAAACTGCAAAGTGCTCTTCCGAGGAT
FD564984       <-- GCAGCAAAGTATTGTGAGGAGAACAAACTGCAAAGTGCTCTTCCGAGGAT
EW726968       <-- GCAGCAAAGTATTGTGAGGAGAACAAACTGCAAAGTGCTCTTCCGAGGAT
FD961550       <-- GCAGCAAAGTATTGTGAGGGGAACAAACTGCAAAGTGCTCTTCCGAGGAT
EV543689       <-- ........................................TTCCGAGGAT
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1001   -   1051
UN13306        --> CATCAAAACTGGATTTTCAGCTATTAACCTCATATATTTCTTTACAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- CATCAAAACTGGATTTTCAGC---TAACCTCATATATTTCTTTACAGCTG
EW720093       <-- CATCAAAACTGGATTTTCAGCTATTAACCTCATATATTTCTTTACAGCTG
FD564984       <-- CATCAAAACTGGATTTTCAGCTATTAACCTCATATATTTCTTTACAGCTG
EW726968       <-- CATCAAAACTGGATTTTCAGC---TAACCTCATATATTTCTTTACAGCTG
FD961550       <-- CATCAAAACTGGATTTTCAGCTATTAACCTCATATATTTCTTTACAGCAG
EV543689       <-- CATCAAAACTGGATTTTCAGCTATTAACCTCATATATTTCTTTACAGCAG
EY934148       <-- .........................................TTACAGTTG
EX900238       <-- ..................................................
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1051   -   1101
UN13306        --> GGCCTGATGAGGTGAAGTGCTGGCAAATAAGACGTCAGTCAAAGGCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- GGCCTGATGAGGTGAAGTGCTGGCAAATAAGACGTCAGTCAAAGGCTCCT
EW720093       <-- GGCCTGATGAGGTGAAGTGCTGGCAAATAAGACGTCAGTCAAAGGCTCCT
FD564984       <-- GGCCTGATGAGGTGAAGTGCTGGCAAATAAGACGTCAGTCAAAGGCTCCT
EW726968       <-- GGCCTGATGAGGTGAAGTGCTGGCAAATAAGACGTCAGTCAAAGGCTCCT
FD961550       <-- GGCCTGATGAGGTGAAGTGCTGGCAAATAAGACGTCAGTCAAAGGCTCCT
EV543689       <-- GGCCTGATGAGGTGAAGTGCTGGCAAATAAGACGTCAGTCAAAGGCTCCT
EY934148       <-- GGCCTGATGAGGTGAAGTGCTGGCAAATAAGACGTCAGTCAAAGGCTCCT
EX900238       <-- ......................................TCAAAGGTTCCT
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1101   -   1151
UN13306        --> CAAGCTGCAGGGGCCATTCATACTGATTTTGAGAGAGGATTCATTTGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- CAAGCTGCAGGGGCCATTCATACTGATTTTGAGAGAGGATTCATTTGTGC
EW720093       <-- CAAGCTGCATGGGCCATTCATACTGATTTTGAGAGAGGATTCATTTGTGC
FD564984       <-- CAAGCTGCAGAGGCCATTCATACTGATTTTGAGAGAGGATTCATTTGTGC
EW726968       <-- CAAGCTGCAGGGGCCATTCATACTGATTTTGAGAGAGGATTCATTTGTGC
FD961550       <-- CAAGCTGCAGGGGCCATTCATACTGATTTTGAGAGAGGATTCATTTGTGC
EV543689       <-- CAAGCTGCAGGGGCCATTCATACTGATTTTGAGAGAGGATTCATTTGTGC
EY934148       <-- CAAGCTGCAGGGGCCATTCATACTGATTTTGAGAGAGGATTCATTTGTGC
EX900238       <-- CAAGCTGCAGGGGCCATTCATACTGATTTTGAGAGAGGATTCATTTGTGC
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1151   -   1201
UN13306        --> CGAGGTCATGAAGTTTGAGGATCTCAAGGAACTTGGCAATGAAACTGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- CGAGGTCATGAAGTTTGAGGATCTCAAGGAACTTGGCAATGAAACTGCAG
EW720093       <-- CGAGGTCATGAAGTTTGAGGATCTCAAGGAACTTGGCAATGAAACTGCAG
FD564984       <-- CGAGGTCATGAAGTTTGAGGATCTCAAGGAACTTGGCAATGAAACTGCAG
EW726968       <-- CGAGGTCATGAAGTTTGAGGATCTCAAGGAACTTGGCAATGAAACTGCAG
FD961550       <-- CGAGGTCATGAAGTTTGAGGATCTCAAGGAACTTGGCAATGAAACTGCAG
EV543689       <-- CGAGGTCATGAAGTTTGAGGATTTCAAGAAACTTGGCAATGAAACTGCAG
EY934148       <-- GGAGGTCATGAAGTTTGAGGATCTCAAGGAACTTGGCAATGAAACTGCAG
EX900238       <-- CGAGGTCATGAAGTTTGAGGATCTCAAGGAACTTGGCAATGAAACTGCAG
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1201   -   1251
UN13306        --> TCAAGGGGGCAGGGAAATACAGACAGGAGGGGAAAACATATGTTGTTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- TCAAGGGGGCAGGGAAATACAGACAGGAGGGGAAAACATATGTTGTTCAG
EW720093       <-- TCAAGGGGGCAGGGAAATACAGACAGGAGGGGAAAACATATGTTGTTCAG
FD564984       <-- TCAAGGGGGCAGGGAAATACAGACAGGAGGGGAAAACATATGTTGTTCAG
EW726968       <-- TCAAGGGGGCAGGGAAATACAGACAGGAGGGGAAAACATATGTTGTTCAG
FD961550       <-- TCAAGGGGGCAGGGAAATACAGACAGGAGGGGAAAACATATGTTGTTCAG
EV543689       <-- TCAAGGGGGCAGGAAAATACAGACAGGAGGGGAAAACATATGTTGTTCAG
EY934148       <-- TCAAGGGGGCAGGGAAATACAGACAGGAGGGGAAAACATATGTTGTTCAG
EX900238       <-- TCAAGGGGGCAGGGAAATACAGACAGGGGGGGAAAACATATGTTGTTCAG
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1251   -   1301
UN13306        --> GACGGAGATATCATTTTCTTCAAGTTCAACGTTTCCGGTGGTGGGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- GACGGAGATATCATTTTCTTCAAGTTCAACGTTTCCGGTGGTGGGAAGAA
EW720093       <-- GACGGAGATATCATTTTCTTCAAGTTCAACGTTTCCGGTGGTGGGAAGAA
FD564984       <-- GACGGAGATATCATTTTTTTCAAGTTCAACGTTTCCGGTGGTGGGAAGAA
EW726968       <-- GACGGAGATATCATTTTCTTCAAGTTCAACGTTTCCGGTGGTGGGAAGAA
FD961550       <-- GACGGAGATATCATTTTCTTCAAGTTCAACGTTTCCGGTGGTGGGAAGAA
EV543689       <-- GACGGAGATATCATTTTTTTCAAGTTCAACGTTTCCGGTGGTGGGAAGAA
EY934148       <-- GACGGAGATATCATTTTCTTCAAGTTCAACGTTTCCGGTGGTGGGAAGAA
EX900238       <-- GACGGAGATATCATTTTTTTCAAGTTCAACGTTTCCGGGGGTGGGAAGAA
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1301   -   1351
UN13306        --> ATGAGAGATTCCAATCTTGTCTTTTT--ACCTATTTCGTGGTATCCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ATGAGAGATTCCAATCTTGTCTTTTT--ACCTATTTCGTGGTATCCTCTC
EW720093       <-- ATGAGAGATTCCAATCTCGTCTTTTT--ACCTATTTCGTGGTATCCTCTC
FD564984       <-- ATGAGATATTCCAATCTTGTCTTTTT--ACCTATTTCGTGGTATCCTCTC
EW726968       <-- ATGAGAGATTCCAATCTTGTCTTTTT--ACCTATTTCGTGGTATCCTCTC
FD961550       <-- ATGAGAGATTCCA-TCTTGTCTTTTT--ACCTATTTCGTTATATCCTCTC
EV543689       <-- ATGAGAGATTCCAATCTTGTCTTTTTTTACCTATTTCGTGGTATCCTCTC
EY934148       <-- ATGAGAGATTCCAATCTTGTCTTTTT--ACATATTTCGTGGTATCCTCTC
EX900238       <-- ATGAGAGATTCCAATCTTGTCTTTTT--ACCTATTTCGTGGTATCCTCTC
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1351   -   1401
UN13306        --> CAGATCTTGAAGCTTTATACAACTTCGAGAGATGAACCAAAACTGTATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- CAGATCTTGAAGCTTTATACAACTTCGAGAGATGAACCAAAACTGTATTT
EW720093       <-- CAGATCTTGAAGCTTTATACAACTTCGAGAGATGAACCAAAACTGTATTT
FD564984       <-- CAGATCTTGAAGCTTTATACAACTTCGAGAGATGAACCAAAACTGTATTT
EW726968       <-- CAGATCTTGAAGCTTTATACAACTTCGAGAGATGAACCAAAACTGTATTT
FD961550       <-- CACATCTTGAAGCTTTATACAACTTCGAGAGATGAACCAAAACTGTATTT
EV543689       <-- CAGATCTTGAAGCTTTATACAACTTCGAGAGATGAACCAAA-CTGTATTT
EY934148       <-- CAGATCTTGAAGCTTTATACAACTTCGAGAGATGAACCAAAACTGTATTT
EX900238       <-- CAGATCTTGAAGCTTTATACAACTTCGAGAGATGAACCAAAACTGTATTT
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1401   -   1451
UN13306        --> TCTGTTTCCAAAGTTTTTTAT----TGGCTTTACTAAAACACAATCTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- TCTGTTTCCAAAGTTTTTTAT----TGGCTTTACTAAAACACAATCTAGT
EW720093       <-- TCTGTTTCCAAAGTTTTTTAT----TGGCTTTACTAAAACACAATCTAGT
FD564984       <-- TCTGTTTCCAAAGTTTTTTAT----TGGCTTTACTAAAACACAATCTAGT
EW726968       <-- TCTGTTTCCAAAGTTTTTTAT----TGGCTTTACTAAAACACAATCTAGT
FD961550       <-- TCTGTTCCCAAAGTTTTTTATATATTGGCTTTACTAAAACACAATCTAGT
EV543689       <-- TTTGTTTCCAAAGTTTTTTAT----TGGCTTTACTAAA-CCCAATTTAGT
EY934148       <-- TCTGTTTCCAAAGTTTTTTAT----TGGCTTTACTAAAACACAATCTAGT
EX900238       <-- TTTGTTTCCAAAGTTTTTTAT----TGGCTTTACTAAAACAa........
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1451   -   1501
UN13306        --> ATCTGTAACTCTTGTTCCTTTCTGCAGTTATTTAAGACATGTCTTTGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- ATCTGTAACTCTTGTTCCTTTCTGCAGTTATTTAAGACATGTCTTTGGCC
EW720093       <-- ATCTGTAACTCTTGTTCCTTTCTGCAGTTATTTAAGACATGTCTTTGGCC
FD564984       <-- ATCTGTAACTCTTGTTCCTTTCTGCAGTTATTTAAGACATGTCTTTGGCC
EW726968       <-- ATCTGTAACTCTTGTTCCTTTCTGCAGTTATTTAAGACATGTCTTTGGCC
FD961550       <-- ATCTGTAACTCTTGTTCCTTTCTGCAGTTATCTAAGACATGTCTTTGGCC
EV543689       <-- ATCTGTAACTCTTGTTCCTTTTTGCAGTTACTTAAGACtt..........
EY934148       <-- ATCTGTAACTCTTGTTCC................................
EX900238       <-- ..................................................
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1501   -   1551
UN13306        --> TTTACCAGCCTGCTGTATTTGTAGAACTCCCTTTCAATAATCTGAAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727261       <-- TTTACCAGCCTGCTGTATTTGTAGAACTCCCTTTCA..............
EW720093       <-- Taaag.............................................
FD564984       <-- TTTACCAGCCTGCTGTATTTGTAGAACTCCCTTTCAATAATCTGAAACAA
EW726968       <-- TTTACCAGCCTGCTGTATTTGTAGAACTCCCTTTCAATAATCTGAAACAA
FD961550       <-- TTTACCAGCCTGCTGTATTTGTAGAACTACCTTTCAATAATCTGAAACAA
EV543689       <-- ..................................................
EY934148       <-- ..................................................
EX900238       <-- ..................................................
EV569729       --> ..................................................
EW722155       --> ..................................................
EW722156       --> ..................................................
EY909043       --> ..................................................
EV535308       --> ..................................................
EX755855       --> ..................................................
EV536038       --> ..................................................
FD964480       --> ..................................................
FD965953       --> ..................................................

               1551   -   1601
UN13306        --> ATACCTTAAAACC
                   ~~~~~~~~~~~~~
EW727261       <-- .............
EW720093       <-- .............
FD564984       <-- ATACCTT......
EW726968       <-- ATACCTTAAAACC
FD961550       <-- ATACCTT......
EV543689       <-- .............
EY934148       <-- .............
EX900238       <-- .............
EV569729       --> .............
EW722155       --> .............
EW722156       --> .............
EY909043       --> .............
EV535308       --> .............
EX755855       --> .............
EV536038       --> .............
FD964480       --> .............
FD965953       --> .............